| Definition | Lactobacillus casei ATCC 334, complete genome. |
|---|---|
| Accession | NC_008526 |
| Length | 2,895,264 |
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The map label for this gene is artP [H]
Identifier: 116494753
GI number: 116494753
Start: 1240773
End: 1241585
Strand: Direct
Name: artP [H]
Synonym: LSEI_1262
Alternate gene names: 116494753
Gene position: 1240773-1241585 (Clockwise)
Preceding gene: 116494752
Following gene: 116494754
Centisome position: 42.86
GC content: 44.28
Gene sequence:
>813_bases ATGAAACGCCGAATCGTACTGGCACTCATGTTACTCGTCACATTGCTAGGCACCGTCATTAGCGGATGTGCGCGCGAAAC CGTCGGCAATTCCTGGCCACGGATCGAACGAACCAAAAAAGTCGTCATCGGTTTGGATGACACCTTTGTTCCAATGGGAT TCCGTCAAAAGAACGGTCAACTGGCTGGCTATGACATTGATCTGGCAAAAGCGGTATTCAAACGCTATGGGATTAATGTC GATTTTCAAACGATTGATTGGTCAATGAAGGAAACTGAACTGAAAAATCAAACAATTGATTTGATCTGGAATGGTTATTC GGTGACACCGGAACGAAAAGAGAAGGTGGCTTTCTCTGATAATTATTTGATTAATCACCAAATTTTAGTCACCAAGACCA AAAGTAATATCAAAACGATCAAAGATATGGCTGGGAAAACCTTGGGTGTCCAAACTGGGTCAAGTGGCGCCTTTGATCTC GATGCCCAGCCAAAATTGCTGAAGAATTTCATTGCAAACAAAACACCAATTCTGTATGACACCTTTAACGATGCTTTCAT TGATCTCGATGCAGGACGCATTCAAGGAATTTTAATGGATGAAGTCTACGCTCGCTATTACATTGCCCACAAACCGGACC CGTCCAGCTATCGCATTGCCAGCGACGACTTTCCACCTGAAAACTTTGCGGTTGGCATGCGCAAGTCAGACAATGTCTTA CGCAGCAAGATTAATGCCGGTTTGAAAGCACTTAAAGCTGACGGCACCGTAGCAAAGTTGCAGAAAAAATGGTTTGGCAA AGTCGGGGAGTAA
Upstream 100 bases:
>100_bases AAGCTTCTGGCATGACGCAGGTTGTCGTCACGCATGACATGGACTTTGCCGAAAGCGTGGCTGACACGACTTATCACGTT GGCAAAGGCGGTGACGGTCA
Downstream 100 bases:
>100_bases TCAGCGTATTTGCGAAGAAAAAATGAGGTTGTGCCGCTGGCAATTGTCAGGGCATGACCTTTTTTCGTCAAGAGGCATCT AAAAAGGGAACTTCGAGACC
Product: amino acid ABC transporter periplasmic protein
Products: ADP; phosphate; L-arginine [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 270; Mature: 270
Protein sequence:
>270_residues MKRRIVLALMLLVTLLGTVISGCARETVGNSWPRIERTKKVVIGLDDTFVPMGFRQKNGQLAGYDIDLAKAVFKRYGINV DFQTIDWSMKETELKNQTIDLIWNGYSVTPERKEKVAFSDNYLINHQILVTKTKSNIKTIKDMAGKTLGVQTGSSGAFDL DAQPKLLKNFIANKTPILYDTFNDAFIDLDAGRIQGILMDEVYARYYIAHKPDPSSYRIASDDFPPENFAVGMRKSDNVL RSKINAGLKALKADGTVAKLQKKWFGKVGE
Sequences:
>Translated_270_residues MKRRIVLALMLLVTLLGTVISGCARETVGNSWPRIERTKKVVIGLDDTFVPMGFRQKNGQLAGYDIDLAKAVFKRYGINV DFQTIDWSMKETELKNQTIDLIWNGYSVTPERKEKVAFSDNYLINHQILVTKTKSNIKTIKDMAGKTLGVQTGSSGAFDL DAQPKLLKNFIANKTPILYDTFNDAFIDLDAGRIQGILMDEVYARYYIAHKPDPSSYRIASDDFPPENFAVGMRKSDNVL RSKINAGLKALKADGTVAKLQKKWFGKVGE >Mature_270_residues MKRRIVLALMLLVTLLGTVISGCARETVGNSWPRIERTKKVVIGLDDTFVPMGFRQKNGQLAGYDIDLAKAVFKRYGINV DFQTIDWSMKETELKNQTIDLIWNGYSVTPERKEKVAFSDNYLINHQILVTKTKSNIKTIKDMAGKTLGVQTGSSGAFDL DAQPKLLKNFIANKTPILYDTFNDAFIDLDAGRIQGILMDEVYARYYIAHKPDPSSYRIASDDFPPENFAVGMRKSDNVL RSKINAGLKALKADGTVAKLQKKWFGKVGE
Specific function: Part of a binding-protein-dependent transport system for arginine [H]
COG id: COG0834
COG function: function code ET; ABC-type amino acid transport/signal transduction systems, periplasmic component/domain
Gene ontology:
Cell location: Cell membrane; Lipid-anchor (Probable) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial solute-binding protein 3 family [H]
Homologues:
Organism=Escherichia coli, GI1787085, Length=230, Percent_Identity=29.1304347826087, Blast_Score=108, Evalue=4e-25, Organism=Escherichia coli, GI1787031, Length=229, Percent_Identity=28.82096069869, Blast_Score=108, Evalue=5e-25, Organism=Escherichia coli, GI1788228, Length=268, Percent_Identity=26.1194029850746, Blast_Score=105, Evalue=4e-24, Organism=Escherichia coli, GI1788648, Length=235, Percent_Identity=30.2127659574468, Blast_Score=103, Evalue=9e-24, Organism=Escherichia coli, GI1788649, Length=276, Percent_Identity=28.2608695652174, Blast_Score=99, Evalue=3e-22, Organism=Escherichia coli, GI1787088, Length=270, Percent_Identity=24.8148148148148, Blast_Score=99, Evalue=4e-22, Organism=Escherichia coli, GI1786876, Length=244, Percent_Identity=22.1311475409836, Blast_Score=62, Evalue=3e-11,
Paralogues:
None
Copy number: 1180 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015683 - InterPro: IPR001638 - InterPro: IPR018313 [H]
Pfam domain/function: PF00497 SBP_bac_3 [H]
EC number: NA
Molecular weight: Translated: 30278; Mature: 30278
Theoretical pI: Translated: 10.03; Mature: 10.03
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRRIVLALMLLVTLLGTVISGCARETVGNSWPRIERTKKVVIGLDDTFVPMGFRQKNGQ CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCEECCCEECCCCE LAGYDIDLAKAVFKRYGINVDFQTIDWSMKETELKNQTIDLIWNGYSVTPERKEKVAFSD EECCCHHHHHHHHHHHCCCEEEEEECCCHHHHHHCCCEEEEEECCEECCCCHHHEEEECC NYLINHQILVTKTKSNIKTIKDMAGKTLGVQTGSSGAFDLDAQPKLLKNFIANKTPILYD CEEEEEEEEEEECCCHHHHHHHHCCCEEEEECCCCCCEECCCCHHHHHHHHCCCCCEEEE TFNDAFIDLDAGRIQGILMDEVYARYYIAHKPDPSSYRIASDDFPPENFAVGMRKSDNVL CCCCEEEEECCHHHHHHHHHHHHHHEEEEECCCCCCEEEECCCCCCCCEEECCCCCHHHH RSKINAGLKALKADGTVAKLQKKWFGKVGE HHHHHHHHHHHCCCCHHHHHHHHHCCCCCC >Mature Secondary Structure MKRRIVLALMLLVTLLGTVISGCARETVGNSWPRIERTKKVVIGLDDTFVPMGFRQKNGQ CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCEECCCEECCCCE LAGYDIDLAKAVFKRYGINVDFQTIDWSMKETELKNQTIDLIWNGYSVTPERKEKVAFSD EECCCHHHHHHHHHHHCCCEEEEEECCCHHHHHHCCCEEEEEECCEECCCCHHHEEEECC NYLINHQILVTKTKSNIKTIKDMAGKTLGVQTGSSGAFDLDAQPKLLKNFIANKTPILYD CEEEEEEEEEEECCCHHHHHHHHCCCEEEEECCCCCCEECCCCHHHHHHHHCCCCCEEEE TFNDAFIDLDAGRIQGILMDEVYARYYIAHKPDPSSYRIASDDFPPENFAVGMRKSDNVL CCCCEEEEECCHHHHHHHHHHHHHHEEEEECCCCCCEEEECCCCCCCCEEECCCCCHHHH RSKINAGLKALKADGTVAKLQKKWFGKVGE HHHHHHHHHHHCCCCHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; L-arginine [Periplasm]; H2O [C]
Specific reaction: ATP + L-arginine [Periplasm] + H2O = ADP + phosphate + L-arginine [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 8969508; 9384377 [H]