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The map label for this gene is sdaAB [H]

Identifier: 116494693

GI number: 116494693

Start: 1180512

End: 1181177

Strand: Direct

Name: sdaAB [H]

Synonym: LSEI_1199

Alternate gene names: 116494693

Gene position: 1180512-1181177 (Clockwise)

Preceding gene: 116494692

Following gene: 116494694

Centisome position: 40.77

GC content: 45.65

Gene sequence:

>666_bases
ATGCCAGATGTACGATTTCATAGTGTGTTTGATATTATCGGTCCAGTGATGGTCGGCCCAAGTAGTTCCCATACAGCAGG
TGCCGCCCGAATTGGAAAAGTGGTTCGCGATATTTTTGGTGAAGCACCAGAAACGATCACGATTTACTTGTATGAATCGT
TTGCCAAGACTTACCGCGGCCACGGGACAGATGTGGCTTTGGTCGCAGGATTATTAGGCATGGCGCCGGATGATCCGCAT
CTACCTGAATCAATGAAGCTTGCCTATGATCAAGGCATTAAGGTTAGCTTTGTACCGAAAAGCGACAAAGTTGATCATCC
AAACACAGCGCATATCGTGCTGCAAAAAGGCGACCACCGGCTAGCCGTGACTGGGGTATCGATTGGCGGCGGTAATATTC
AGATTACTGAAATCAATGGCTTTAAAATTTCTCTGAGTATGGGGCAGCCAACTTATATTACAATTCATGAAGACGTTCCC
GGGATGATCGCGCAGGTGACGAAAATCTTTTCCGATGCTGGTATTAACATCGGTACCATGACTGTGACTCGCGAATCAAA
AGGCGAGCAGGCGATCATGATTATTGAAACAGACGACTATCAAGATGATATTTTGGCTAAGTTGAAACAATTGCCGCATA
TGGTGAATGTCACTTACTTCGAATGA

Upstream 100 bases:

>100_bases
CTCGCCTGCGCGTGTTGGTAAAGTTTTGGCGAACGCCTATTTTGCCTAGTTCACCACTTGGATTAGCTAGCAAACTGCAT
CATGTTAAAGGAGAAAAGCC

Downstream 100 bases:

>100_bases
CAGTCGTTTTTAATTGTTGTCCCTGATGTTTTGATAAAGGAGTCGCCTATGTTTTATACCGTCAAAGAATTGATTGAGCA
AAGTCACGCGTTTCCATCTG

Product: L-serine deaminase

Products: NA

Alternate protein names: SDH; L-serine deaminase; L-SD [H]

Number of amino acids: Translated: 221; Mature: 220

Protein sequence:

>221_residues
MPDVRFHSVFDIIGPVMVGPSSSHTAGAARIGKVVRDIFGEAPETITIYLYESFAKTYRGHGTDVALVAGLLGMAPDDPH
LPESMKLAYDQGIKVSFVPKSDKVDHPNTAHIVLQKGDHRLAVTGVSIGGGNIQITEINGFKISLSMGQPTYITIHEDVP
GMIAQVTKIFSDAGINIGTMTVTRESKGEQAIMIIETDDYQDDILAKLKQLPHMVNVTYFE

Sequences:

>Translated_221_residues
MPDVRFHSVFDIIGPVMVGPSSSHTAGAARIGKVVRDIFGEAPETITIYLYESFAKTYRGHGTDVALVAGLLGMAPDDPH
LPESMKLAYDQGIKVSFVPKSDKVDHPNTAHIVLQKGDHRLAVTGVSIGGGNIQITEINGFKISLSMGQPTYITIHEDVP
GMIAQVTKIFSDAGINIGTMTVTRESKGEQAIMIIETDDYQDDILAKLKQLPHMVNVTYFE
>Mature_220_residues
PDVRFHSVFDIIGPVMVGPSSSHTAGAARIGKVVRDIFGEAPETITIYLYESFAKTYRGHGTDVALVAGLLGMAPDDPHL
PESMKLAYDQGIKVSFVPKSDKVDHPNTAHIVLQKGDHRLAVTGVSIGGGNIQITEINGFKISLSMGQPTYITIHEDVPG
MIAQVTKIFSDAGINIGTMTVTRESKGEQAIMIIETDDYQDDILAKLKQLPHMVNVTYFE

Specific function: Anaerobic degradation of L-threonine to propionate. [C]

COG id: COG1760

COG function: function code E; L-serine deaminase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ACT domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002912
- InterPro:   IPR004643
- InterPro:   IPR005131 [H]

Pfam domain/function: PF01842 ACT; PF03315 SDH_beta [H]

EC number: =4.3.1.17 [H]

Molecular weight: Translated: 23980; Mature: 23849

Theoretical pI: Translated: 5.77; Mature: 5.77

Prosite motif: PS00120 LIPASE_SER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDVRFHSVFDIIGPVMVGPSSSHTAGAARIGKVVRDIFGEAPETITIYLYESFAKTYRG
CCCCCHHHHHHHHCCEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEEHHHHHHCC
HGTDVALVAGLLGMAPDDPHLPESMKLAYDQGIKVSFVPKSDKVDHPNTAHIVLQKGDHR
CCCHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEECCCCE
LAVTGVSIGGGNIQITEINGFKISLSMGQPTYITIHEDVPGMIAQVTKIFSDAGINIGTM
EEEEEEEECCCEEEEEEECCEEEEEECCCCEEEEEECCCCHHHHHHHHHHHHCCCEEEEE
TVTRESKGEQAIMIIETDDYQDDILAKLKQLPHMVNVTYFE
EEEECCCCCEEEEEEECCCCHHHHHHHHHHCCCEEEEEEEC
>Mature Secondary Structure 
PDVRFHSVFDIIGPVMVGPSSSHTAGAARIGKVVRDIFGEAPETITIYLYESFAKTYRG
CCCCHHHHHHHHCCEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEEHHHHHHCC
HGTDVALVAGLLGMAPDDPHLPESMKLAYDQGIKVSFVPKSDKVDHPNTAHIVLQKGDHR
CCCHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEECCCCE
LAVTGVSIGGGNIQITEINGFKISLSMGQPTYITIHEDVPGMIAQVTKIFSDAGINIGTM
EEEEEEEECCCEEEEEEECCEEEEEECCCCEEEEEECCCCHHHHHHHHHHHHCCCEEEEE
TVTRESKGEQAIMIIETDDYQDDILAKLKQLPHMVNVTYFE
EEEECCCCCEEEEEEECCCCHHHHHHHHHHCCCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9534248; 9384377 [H]