Definition Lactobacillus casei ATCC 334, complete genome.
Accession NC_008526
Length 2,895,264

Click here to switch to the map view.

The map label for this gene is 116494608

Identifier: 116494608

GI number: 116494608

Start: 1094383

End: 1096122

Strand: Direct

Name: 116494608

Synonym: LSEI_1109

Alternate gene names: NA

Gene position: 1094383-1096122 (Clockwise)

Preceding gene: 116494596

Following gene: 116494611

Centisome position: 37.8

GC content: 49.83

Gene sequence:

>1740_bases
ATGCACGCACAGACATCATCAGCAAAGCTGAAGACATTCATGACACAAAATGCTGTCTGGCTGTTGCCGATTTTGGCGAT
GGTCTTGGTTTTGCTCGTACAGTGGCCGCAGCTGCATCTACCCTATATCTTTCATCAAGACGATACGATGCCACAGCTGC
GGCGGTTGGAAAGCTATGTGACCAGTGTGCGGCACGGCCAGTATTTTCCCAAAGTTTTTCCTGAGGCAGTCCGCAACTTT
GGCTATGCTTTTGACGCGTACTATCCTTCATTAATGTTGTTGCCATATGTGTGGCTACGGCTGATGGGGATGGGGGTGGT
CGGTGCGTATGATGGTTATCAGGCCCTCATTCTCATCGTCACAGTATTGGCTGCCTACGCTAGTTTCTTGAAAATTCGGC
GAAAACCGCTGGCGGCGTTTGTTTTCAGCATGGTGTATACGACTGCGGTCTACCGGGCCTTAGACGCCTTTGTGCGGGGG
GCCTTGGGTGAAAATCTGGCCTTCATTTTCCCGCCGATCATCGCCGCGGGCATGTATGAGCTTTACGTCAAACGAACCGA
TAACTGGTTTTTACTGGCGTTTGGTGTGACCGGTCTGATGTATGCGCATATGTTGTCGCTGGTTATGGTGCTGGAATTTT
TGGTTGGCGGCTTTCTCGTGTTGGTTGGCATGCGGCGCGTGACTTGGCGAATGGTCAAGTACACGATACTGGCAGCGATC
AGTACGCTGCTGATGGGACTGGGCAGCTACTTGCCGATGATTGAGATGTCCAGTCATATTGCGTTGAAGTTAAGCGAGTC
TGCGACGATCTGGCCGAACTTCATCCTCTATGGTTTGGGTGATCTTTTTGAGAACTCCCTGAGTATGTATGCCTCAACCA
GTAATATGCAGAATGTCGGCCAAGCCTTTCGACCTGGCATGGGCATTTTCATGTTAATGACAGCCATTGTGCTGGTGATT
CGTTGGCGGAAATTGAATCAAGCGGTTAAGGTAGTTGCTGGCCTAGGGCTGTTGACGATCTTTCTAAGCACCAATTTGTT
CCCTTGGTCGTTGTTTAGCAAAACGATCTTCGGTGTCATCCAATTTCCTTGGCGATACTTGGAGCTGACGACTTTATTTC
TTAGTCTGGCAATTGGGTTGATCGTGGCGGATCGTCCAGCCTCATCACATGTTGCTTGGGGGCTGGTGCTGGCAACCTGC
ATTGTCGGTTTCAGTTATGCCGTGAATATCAATGCGACGATGCTTAATGCCAACATTTATCGCATCACCGATGAGAATGC
AACGGCTTATTATGAAGATGCAACTGGCGGCGGGAGTGAGTATGCACCAGAAGATTTTGATTCAACGACTTTTTTTAAAA
AGACAACTTATTCGGTAACGGCTTCTCATCAATTGACCCGGCTAACGATGCCGACCCAAACTTACAATGATATGCGTTTT
ACCTATACCAGCAGCAAGCCGGTGACCCTGAAGCTGCCAAAATTTGGCTACGTCGGTTATCATGTGACCATCAGCGGTAA
GACAGTTGACTACTGGCCAAGTGGGAAAAATGCTCAGATTACGATAGCGGCACCAGCAGGCACGCATCGTGTTCGAGTTG
TCTATACAGGTACGGCGCTGCAACATGTGACCGGCTGGCTTTCCTTAGTGGCTGCGCTTGGCTTTGGTGGTTGGTGGTTG
TTGCGTGAAACACGTAGGCAACGGGCAACGGATGAGCGGATAACGACTGGGTCCGAGTAA

Upstream 100 bases:

>100_bases
GGGTGGTGTGGTCAACGGGATGAAAATAATCTTTTCCGGTAAGACAAACAGCATCGGGGAACGGTACAATAGAATGAAAG
TTATTTTGGGAGGACGGTTT

Downstream 100 bases:

>100_bases
AAACAATCTAGGGTTAAGGTGAGAATCATAGTTGCCAAATGAAAACGACTGATTTTCCAATATTGTGGAAAATGCAGCCG
TTTTTCGTTTTTTCATAGAG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 579; Mature: 579

Protein sequence:

>579_residues
MHAQTSSAKLKTFMTQNAVWLLPILAMVLVLLVQWPQLHLPYIFHQDDTMPQLRRLESYVTSVRHGQYFPKVFPEAVRNF
GYAFDAYYPSLMLLPYVWLRLMGMGVVGAYDGYQALILIVTVLAAYASFLKIRRKPLAAFVFSMVYTTAVYRALDAFVRG
ALGENLAFIFPPIIAAGMYELYVKRTDNWFLLAFGVTGLMYAHMLSLVMVLEFLVGGFLVLVGMRRVTWRMVKYTILAAI
STLLMGLGSYLPMIEMSSHIALKLSESATIWPNFILYGLGDLFENSLSMYASTSNMQNVGQAFRPGMGIFMLMTAIVLVI
RWRKLNQAVKVVAGLGLLTIFLSTNLFPWSLFSKTIFGVIQFPWRYLELTTLFLSLAIGLIVADRPASSHVAWGLVLATC
IVGFSYAVNINATMLNANIYRITDENATAYYEDATGGGSEYAPEDFDSTTFFKKTTYSVTASHQLTRLTMPTQTYNDMRF
TYTSSKPVTLKLPKFGYVGYHVTISGKTVDYWPSGKNAQITIAAPAGTHRVRVVYTGTALQHVTGWLSLVAALGFGGWWL
LRETRRQRATDERITTGSE

Sequences:

>Translated_579_residues
MHAQTSSAKLKTFMTQNAVWLLPILAMVLVLLVQWPQLHLPYIFHQDDTMPQLRRLESYVTSVRHGQYFPKVFPEAVRNF
GYAFDAYYPSLMLLPYVWLRLMGMGVVGAYDGYQALILIVTVLAAYASFLKIRRKPLAAFVFSMVYTTAVYRALDAFVRG
ALGENLAFIFPPIIAAGMYELYVKRTDNWFLLAFGVTGLMYAHMLSLVMVLEFLVGGFLVLVGMRRVTWRMVKYTILAAI
STLLMGLGSYLPMIEMSSHIALKLSESATIWPNFILYGLGDLFENSLSMYASTSNMQNVGQAFRPGMGIFMLMTAIVLVI
RWRKLNQAVKVVAGLGLLTIFLSTNLFPWSLFSKTIFGVIQFPWRYLELTTLFLSLAIGLIVADRPASSHVAWGLVLATC
IVGFSYAVNINATMLNANIYRITDENATAYYEDATGGGSEYAPEDFDSTTFFKKTTYSVTASHQLTRLTMPTQTYNDMRF
TYTSSKPVTLKLPKFGYVGYHVTISGKTVDYWPSGKNAQITIAAPAGTHRVRVVYTGTALQHVTGWLSLVAALGFGGWWL
LRETRRQRATDERITTGSE
>Mature_579_residues
MHAQTSSAKLKTFMTQNAVWLLPILAMVLVLLVQWPQLHLPYIFHQDDTMPQLRRLESYVTSVRHGQYFPKVFPEAVRNF
GYAFDAYYPSLMLLPYVWLRLMGMGVVGAYDGYQALILIVTVLAAYASFLKIRRKPLAAFVFSMVYTTAVYRALDAFVRG
ALGENLAFIFPPIIAAGMYELYVKRTDNWFLLAFGVTGLMYAHMLSLVMVLEFLVGGFLVLVGMRRVTWRMVKYTILAAI
STLLMGLGSYLPMIEMSSHIALKLSESATIWPNFILYGLGDLFENSLSMYASTSNMQNVGQAFRPGMGIFMLMTAIVLVI
RWRKLNQAVKVVAGLGLLTIFLSTNLFPWSLFSKTIFGVIQFPWRYLELTTLFLSLAIGLIVADRPASSHVAWGLVLATC
IVGFSYAVNINATMLNANIYRITDENATAYYEDATGGGSEYAPEDFDSTTFFKKTTYSVTASHQLTRLTMPTQTYNDMRF
TYTSSKPVTLKLPKFGYVGYHVTISGKTVDYWPSGKNAQITIAAPAGTHRVRVVYTGTALQHVTGWLSLVAALGFGGWWL
LRETRRQRATDERITTGSE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 64942; Mature: 64942

Theoretical pI: Translated: 9.84; Mature: 9.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHCCCCCCC
>Mature Secondary Structure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HHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA