| Definition | Lactobacillus casei ATCC 334, complete genome. |
|---|---|
| Accession | NC_008526 |
| Length | 2,895,264 |
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The map label for this gene is 116494608
Identifier: 116494608
GI number: 116494608
Start: 1094383
End: 1096122
Strand: Direct
Name: 116494608
Synonym: LSEI_1109
Alternate gene names: NA
Gene position: 1094383-1096122 (Clockwise)
Preceding gene: 116494596
Following gene: 116494611
Centisome position: 37.8
GC content: 49.83
Gene sequence:
>1740_bases ATGCACGCACAGACATCATCAGCAAAGCTGAAGACATTCATGACACAAAATGCTGTCTGGCTGTTGCCGATTTTGGCGAT GGTCTTGGTTTTGCTCGTACAGTGGCCGCAGCTGCATCTACCCTATATCTTTCATCAAGACGATACGATGCCACAGCTGC GGCGGTTGGAAAGCTATGTGACCAGTGTGCGGCACGGCCAGTATTTTCCCAAAGTTTTTCCTGAGGCAGTCCGCAACTTT GGCTATGCTTTTGACGCGTACTATCCTTCATTAATGTTGTTGCCATATGTGTGGCTACGGCTGATGGGGATGGGGGTGGT CGGTGCGTATGATGGTTATCAGGCCCTCATTCTCATCGTCACAGTATTGGCTGCCTACGCTAGTTTCTTGAAAATTCGGC GAAAACCGCTGGCGGCGTTTGTTTTCAGCATGGTGTATACGACTGCGGTCTACCGGGCCTTAGACGCCTTTGTGCGGGGG GCCTTGGGTGAAAATCTGGCCTTCATTTTCCCGCCGATCATCGCCGCGGGCATGTATGAGCTTTACGTCAAACGAACCGA TAACTGGTTTTTACTGGCGTTTGGTGTGACCGGTCTGATGTATGCGCATATGTTGTCGCTGGTTATGGTGCTGGAATTTT TGGTTGGCGGCTTTCTCGTGTTGGTTGGCATGCGGCGCGTGACTTGGCGAATGGTCAAGTACACGATACTGGCAGCGATC AGTACGCTGCTGATGGGACTGGGCAGCTACTTGCCGATGATTGAGATGTCCAGTCATATTGCGTTGAAGTTAAGCGAGTC TGCGACGATCTGGCCGAACTTCATCCTCTATGGTTTGGGTGATCTTTTTGAGAACTCCCTGAGTATGTATGCCTCAACCA GTAATATGCAGAATGTCGGCCAAGCCTTTCGACCTGGCATGGGCATTTTCATGTTAATGACAGCCATTGTGCTGGTGATT CGTTGGCGGAAATTGAATCAAGCGGTTAAGGTAGTTGCTGGCCTAGGGCTGTTGACGATCTTTCTAAGCACCAATTTGTT CCCTTGGTCGTTGTTTAGCAAAACGATCTTCGGTGTCATCCAATTTCCTTGGCGATACTTGGAGCTGACGACTTTATTTC TTAGTCTGGCAATTGGGTTGATCGTGGCGGATCGTCCAGCCTCATCACATGTTGCTTGGGGGCTGGTGCTGGCAACCTGC ATTGTCGGTTTCAGTTATGCCGTGAATATCAATGCGACGATGCTTAATGCCAACATTTATCGCATCACCGATGAGAATGC AACGGCTTATTATGAAGATGCAACTGGCGGCGGGAGTGAGTATGCACCAGAAGATTTTGATTCAACGACTTTTTTTAAAA AGACAACTTATTCGGTAACGGCTTCTCATCAATTGACCCGGCTAACGATGCCGACCCAAACTTACAATGATATGCGTTTT ACCTATACCAGCAGCAAGCCGGTGACCCTGAAGCTGCCAAAATTTGGCTACGTCGGTTATCATGTGACCATCAGCGGTAA GACAGTTGACTACTGGCCAAGTGGGAAAAATGCTCAGATTACGATAGCGGCACCAGCAGGCACGCATCGTGTTCGAGTTG TCTATACAGGTACGGCGCTGCAACATGTGACCGGCTGGCTTTCCTTAGTGGCTGCGCTTGGCTTTGGTGGTTGGTGGTTG TTGCGTGAAACACGTAGGCAACGGGCAACGGATGAGCGGATAACGACTGGGTCCGAGTAA
Upstream 100 bases:
>100_bases GGGTGGTGTGGTCAACGGGATGAAAATAATCTTTTCCGGTAAGACAAACAGCATCGGGGAACGGTACAATAGAATGAAAG TTATTTTGGGAGGACGGTTT
Downstream 100 bases:
>100_bases AAACAATCTAGGGTTAAGGTGAGAATCATAGTTGCCAAATGAAAACGACTGATTTTCCAATATTGTGGAAAATGCAGCCG TTTTTCGTTTTTTCATAGAG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 579; Mature: 579
Protein sequence:
>579_residues MHAQTSSAKLKTFMTQNAVWLLPILAMVLVLLVQWPQLHLPYIFHQDDTMPQLRRLESYVTSVRHGQYFPKVFPEAVRNF GYAFDAYYPSLMLLPYVWLRLMGMGVVGAYDGYQALILIVTVLAAYASFLKIRRKPLAAFVFSMVYTTAVYRALDAFVRG ALGENLAFIFPPIIAAGMYELYVKRTDNWFLLAFGVTGLMYAHMLSLVMVLEFLVGGFLVLVGMRRVTWRMVKYTILAAI STLLMGLGSYLPMIEMSSHIALKLSESATIWPNFILYGLGDLFENSLSMYASTSNMQNVGQAFRPGMGIFMLMTAIVLVI RWRKLNQAVKVVAGLGLLTIFLSTNLFPWSLFSKTIFGVIQFPWRYLELTTLFLSLAIGLIVADRPASSHVAWGLVLATC IVGFSYAVNINATMLNANIYRITDENATAYYEDATGGGSEYAPEDFDSTTFFKKTTYSVTASHQLTRLTMPTQTYNDMRF TYTSSKPVTLKLPKFGYVGYHVTISGKTVDYWPSGKNAQITIAAPAGTHRVRVVYTGTALQHVTGWLSLVAALGFGGWWL LRETRRQRATDERITTGSE
Sequences:
>Translated_579_residues MHAQTSSAKLKTFMTQNAVWLLPILAMVLVLLVQWPQLHLPYIFHQDDTMPQLRRLESYVTSVRHGQYFPKVFPEAVRNF GYAFDAYYPSLMLLPYVWLRLMGMGVVGAYDGYQALILIVTVLAAYASFLKIRRKPLAAFVFSMVYTTAVYRALDAFVRG ALGENLAFIFPPIIAAGMYELYVKRTDNWFLLAFGVTGLMYAHMLSLVMVLEFLVGGFLVLVGMRRVTWRMVKYTILAAI STLLMGLGSYLPMIEMSSHIALKLSESATIWPNFILYGLGDLFENSLSMYASTSNMQNVGQAFRPGMGIFMLMTAIVLVI RWRKLNQAVKVVAGLGLLTIFLSTNLFPWSLFSKTIFGVIQFPWRYLELTTLFLSLAIGLIVADRPASSHVAWGLVLATC IVGFSYAVNINATMLNANIYRITDENATAYYEDATGGGSEYAPEDFDSTTFFKKTTYSVTASHQLTRLTMPTQTYNDMRF TYTSSKPVTLKLPKFGYVGYHVTISGKTVDYWPSGKNAQITIAAPAGTHRVRVVYTGTALQHVTGWLSLVAALGFGGWWL LRETRRQRATDERITTGSE >Mature_579_residues MHAQTSSAKLKTFMTQNAVWLLPILAMVLVLLVQWPQLHLPYIFHQDDTMPQLRRLESYVTSVRHGQYFPKVFPEAVRNF GYAFDAYYPSLMLLPYVWLRLMGMGVVGAYDGYQALILIVTVLAAYASFLKIRRKPLAAFVFSMVYTTAVYRALDAFVRG ALGENLAFIFPPIIAAGMYELYVKRTDNWFLLAFGVTGLMYAHMLSLVMVLEFLVGGFLVLVGMRRVTWRMVKYTILAAI STLLMGLGSYLPMIEMSSHIALKLSESATIWPNFILYGLGDLFENSLSMYASTSNMQNVGQAFRPGMGIFMLMTAIVLVI RWRKLNQAVKVVAGLGLLTIFLSTNLFPWSLFSKTIFGVIQFPWRYLELTTLFLSLAIGLIVADRPASSHVAWGLVLATC IVGFSYAVNINATMLNANIYRITDENATAYYEDATGGGSEYAPEDFDSTTFFKKTTYSVTASHQLTRLTMPTQTYNDMRF TYTSSKPVTLKLPKFGYVGYHVTISGKTVDYWPSGKNAQITIAAPAGTHRVRVVYTGTALQHVTGWLSLVAALGFGGWWL LRETRRQRATDERITTGSE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 64942; Mature: 64942
Theoretical pI: Translated: 9.84; Mature: 9.84
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 4.3 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 4.3 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHAQTSSAKLKTFMTQNAVWLLPILAMVLVLLVQWPQLHLPYIFHQDDTMPQLRRLESYV CCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHH TSVRHGQYFPKVFPEAVRNFGYAFDAYYPSLMLLPYVWLRLMGMGVVGAYDGYQALILIV HHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCEECCCHHHHHHHHH TVLAAYASFLKIRRKPLAAFVFSMVYTTAVYRALDAFVRGALGENLAFIFPPIIAAGMYE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH LYVKRTDNWFLLAFGVTGLMYAHMLSLVMVLEFLVGGFLVLVGMRRVTWRMVKYTILAAI HHEEECCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH STLLMGLGSYLPMIEMSSHIALKLSESATIWPNFILYGLGDLFENSLSMYASTSNMQNVG HHHHHHHHHHCCHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHH QAFRPGMGIFMLMTAIVLVIRWRKLNQAVKVVAGLGLLTIFLSTNLFPWSLFSKTIFGVI HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH QFPWRYLELTTLFLSLAIGLIVADRPASSHVAWGLVLATCIVGFSYAVNINATMLNANIY HCCHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHCCCEEEEEEEEEEECEEE RITDENATAYYEDATGGGSEYAPEDFDSTTFFKKTTYSVTASHQLTRLTMPTQTYNDMRF EEECCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCEEEEECCCCCCCCEEE TYTSSKPVTLKLPKFGYVGYHVTISGKTVDYWPSGKNAQITIAAPAGTHRVRVVYTGTAL EEECCCCEEEECCCCCEEEEEEEEECCEEEECCCCCCCEEEEECCCCCCEEEEEEECHHH QHVTGWLSLVAALGFGGWWLLRETRRQRATDERITTGSE HHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHCCCCCCC >Mature Secondary Structure MHAQTSSAKLKTFMTQNAVWLLPILAMVLVLLVQWPQLHLPYIFHQDDTMPQLRRLESYV CCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHH TSVRHGQYFPKVFPEAVRNFGYAFDAYYPSLMLLPYVWLRLMGMGVVGAYDGYQALILIV HHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCEECCCHHHHHHHHH TVLAAYASFLKIRRKPLAAFVFSMVYTTAVYRALDAFVRGALGENLAFIFPPIIAAGMYE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH LYVKRTDNWFLLAFGVTGLMYAHMLSLVMVLEFLVGGFLVLVGMRRVTWRMVKYTILAAI HHEEECCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH STLLMGLGSYLPMIEMSSHIALKLSESATIWPNFILYGLGDLFENSLSMYASTSNMQNVG HHHHHHHHHHCCHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHH QAFRPGMGIFMLMTAIVLVIRWRKLNQAVKVVAGLGLLTIFLSTNLFPWSLFSKTIFGVI HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH QFPWRYLELTTLFLSLAIGLIVADRPASSHVAWGLVLATCIVGFSYAVNINATMLNANIY HCCHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHCCCEEEEEEEEEEECEEE RITDENATAYYEDATGGGSEYAPEDFDSTTFFKKTTYSVTASHQLTRLTMPTQTYNDMRF EEECCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCEEEEECCCCCCCCEEE TYTSSKPVTLKLPKFGYVGYHVTISGKTVDYWPSGKNAQITIAAPAGTHRVRVVYTGTAL EEECCCCEEEECCCCCEEEEEEEEECCEEEECCCCCCCEEEEECCCCCCEEEEEEECHHH QHVTGWLSLVAALGFGGWWLLRETRRQRATDERITTGSE HHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA