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The map label for this gene is potC [H]

Identifier: 116494512

GI number: 116494512

Start: 993037

End: 993876

Strand: Direct

Name: potC [H]

Synonym: LSEI_1008

Alternate gene names: 116494512

Gene position: 993037-993876 (Clockwise)

Preceding gene: 116494511

Following gene: 116494513

Centisome position: 34.3

GC content: 44.29

Gene sequence:

>840_bases
ATGAAGCGTAAATTCAAATGGTCCAACCTTTATCTGATCTTCGTCTTCATCTGTTTGTATGTGCCGATCTTTTATTTGGT
TATCTACTCGTTTTCAACGGGAGATCGTATGAGCAATTACAGCGGCTTCACATGGAAACATTATGCTGAGCTGTTTGCCG
ACACCCGGATGATTCAAATTGTTCTGGATACGTTGCTAGTCGCGCTATTATCCAGTTTGATCGCTACGATTATCGGTGCG
TTAGGAGCATTAGCAATTGATCGTACTAGTCGACCTGTTGTTAAAAACACGGTCTTATCCCTCAACAACATTCTCATGGT
GAGTCCAGATGTCATTATCGGTGCTAGTTTTCTGATCTTCTATACCGCGTTGAAAGTGCCATTGGGTTTCTGGTCCGTCT
TGATGAGCCATATTGCCTTTTCTATCCCGATTGTCGTGTTGATGATCCTACCGCGGCTTCAGGAAATGAGCCATTCTTTA
CTAGATGCTGCTCGTGATTTAGGCGCGTCCAACTATCAAGTTTTAACGCGCGTGATCGTGCCCTATATTACGCCTGGCAT
TTTCTCCGGCTTTTTCATGGCCTTTACGTATTCACTAGATGATTTTGCCGTGACCTTCTTTGTCACTGGTAATGGTTTTG
AAACACTGGCAGTCGAAATATACGCTCGCGCACGACAAGGCATCAGCTTGGAGATCAATGCGTTGTCAGGCGTCATGTTT
ATCTTTGCTTTACTGCTGGTAGTCGGTTACTACTTCATTCAACAAGCAGGTCAAAATCGGCGAGCCAAACAAAAACACAA
GCGAGAAAGCGAGGCGTTGATCAATGAAACGACTCATTAG

Upstream 100 bases:

>100_bases
AACTGGGGCATGGGTTCGACGATCGGGGTTGTCCTGATCGTCGCCATGTTCATCATCATGTTCCTGACCGGTGAACGTAA
GAAGAAGGGGGCGCGGCGTC

Downstream 100 bases:

>100_bases
TATTGCGATTGCCATCTTAGCTGTTTGTCTCGGATTAGCAGTTTGGAGTGAAGGGTTACAAAAATCGCAAGGTGACACGG
GTGAAAACACGTTAAACCTT

Product: spermidine/putrescine ABC transporter permease protein

Products: Phosphate; putrescine [Cytoplasm]; ADP; spermidine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 279; Mature: 279

Protein sequence:

>279_residues
MKRKFKWSNLYLIFVFICLYVPIFYLVIYSFSTGDRMSNYSGFTWKHYAELFADTRMIQIVLDTLLVALLSSLIATIIGA
LGALAIDRTSRPVVKNTVLSLNNILMVSPDVIIGASFLIFYTALKVPLGFWSVLMSHIAFSIPIVVLMILPRLQEMSHSL
LDAARDLGASNYQVLTRVIVPYITPGIFSGFFMAFTYSLDDFAVTFFVTGNGFETLAVEIYARARQGISLEINALSGVMF
IFALLLVVGYYFIQQAGQNRRAKQKHKRESEALINETTH

Sequences:

>Translated_279_residues
MKRKFKWSNLYLIFVFICLYVPIFYLVIYSFSTGDRMSNYSGFTWKHYAELFADTRMIQIVLDTLLVALLSSLIATIIGA
LGALAIDRTSRPVVKNTVLSLNNILMVSPDVIIGASFLIFYTALKVPLGFWSVLMSHIAFSIPIVVLMILPRLQEMSHSL
LDAARDLGASNYQVLTRVIVPYITPGIFSGFFMAFTYSLDDFAVTFFVTGNGFETLAVEIYARARQGISLEINALSGVMF
IFALLLVVGYYFIQQAGQNRRAKQKHKRESEALINETTH
>Mature_279_residues
MKRKFKWSNLYLIFVFICLYVPIFYLVIYSFSTGDRMSNYSGFTWKHYAELFADTRMIQIVLDTLLVALLSSLIATIIGA
LGALAIDRTSRPVVKNTVLSLNNILMVSPDVIIGASFLIFYTALKVPLGFWSVLMSHIAFSIPIVVLMILPRLQEMSHSL
LDAARDLGASNYQVLTRVIVPYITPGIFSGFFMAFTYSLDDFAVTFFVTGNGFETLAVEIYARARQGISLEINALSGVMF
IFALLLVVGYYFIQQAGQNRRAKQKHKRESEALINETTH

Specific function: Required for the activity of the bacterial periplasmic transport system of putrescine and spermidine [H]

COG id: COG1177

COG function: function code E; ABC-type spermidine/putrescine transport system, permease component II

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787368, Length=231, Percent_Identity=35.0649350649351, Blast_Score=157, Evalue=8e-40,
Organism=Escherichia coli, GI1787081, Length=275, Percent_Identity=32.3636363636364, Blast_Score=125, Evalue=4e-30,
Organism=Escherichia coli, GI1787714, Length=246, Percent_Identity=24.7967479674797, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1788764, Length=181, Percent_Identity=25.414364640884, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 31422; Mature: 31422

Theoretical pI: Translated: 9.53; Mature: 9.53

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRKFKWSNLYLIFVFICLYVPIFYLVIYSFSTGDRMSNYSGFTWKHYAELFADTRMIQI
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
VLDTLLVALLSSLIATIIGALGALAIDRTSRPVVKNTVLSLNNILMVSPDVIIGASFLIF
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCEEEECCCHHHHHHHHHH
YTALKVPLGFWSVLMSHIAFSIPIVVLMILPRLQEMSHSLLDAARDLGASNYQVLTRVIV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
PYITPGIFSGFFMAFTYSLDDFAVTFFVTGNGFETLAVEIYARARQGISLEINALSGVMF
HHHCHHHHHHHHHHHHHCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCEEEEHHHHHHHH
IFALLLVVGYYFIQQAGQNRRAKQKHKRESEALINETTH
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKRKFKWSNLYLIFVFICLYVPIFYLVIYSFSTGDRMSNYSGFTWKHYAELFADTRMIQI
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
VLDTLLVALLSSLIATIIGALGALAIDRTSRPVVKNTVLSLNNILMVSPDVIIGASFLIF
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCEEEECCCHHHHHHHHHH
YTALKVPLGFWSVLMSHIAFSIPIVVLMILPRLQEMSHSLLDAARDLGASNYQVLTRVIV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
PYITPGIFSGFFMAFTYSLDDFAVTFFVTGNGFETLAVEIYARARQGISLEINALSGVMF
HHHCHHHHHHHHHHHHHCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCEEEEHHHHHHHH
IFALLLVVGYYFIQQAGQNRRAKQKHKRESEALINETTH
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Putrescine [Periplasm]; H2O; ATP; spermidine [Periplasm] [C]

Specific reaction: ATP + putrescine [Periplasm] + H2O = ADP + phosphate + putrescine [Cytoplasm] ATP + spermidine [Periplasm] + H2O = ADP + phosphate + spermidine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]