Definition Lactobacillus casei ATCC 334, complete genome.
Accession NC_008526
Length 2,895,264

Click here to switch to the map view.

The map label for this gene is 116494073

Identifier: 116494073

GI number: 116494073

Start: 516604

End: 517257

Strand: Direct

Name: 116494073

Synonym: LSEI_0515

Alternate gene names: NA

Gene position: 516604-517257 (Clockwise)

Preceding gene: 116494072

Following gene: 116494074

Centisome position: 17.84

GC content: 37.46

Gene sequence:

>654_bases
ATGAGCTTTATTTCTGGATTTTTGACTAAAGACTTTTGCTCAATTGTGGCAAATGGAAGAATGTCTCAAGGAGCAAAAAC
GGTTGGGGAAAACTATAAAAAATTTATGTTAGCCGAATCAAACATTTTGATTGCAACTACAGGAAACGCTCAAGTTGCTG
ACATAATAAAGGACTTCATAAAGCGATTACATGTTCAAAGCAACGGAGCTCAGTTAAACTGGCAACTTTACGTAAATGTG
ATCCAACAGTTTGTTAAGGAAACGTTAAAGGAGGCAAAAGACATAGATGGAAATTGTGTAAATCAAATTGTTGTTATTTG
CGGAGTTAATGGTAACAAAATCATGGCTTTGGCATTTGGACAAACTGACGCAGGTTATATTCAACGTGAGTACTTGCCTG
GGGAAAATGAGCAAAAGTTCTTTACTATGACTCCTCCAGGTGTGAATCCAGATGCCGTCACTAAGGAGTTCATCTCGATT
ACCAACAAAATCGAGATTAGAACATATAGTGACATAGTTATAGTTCAAAGCAAATTGCAAGATTATGTGGCAGAAATCGA
TTCGGGAAAATCAGTTAATACACATAAGATGGGGATGGGGGCGAGGATAGACGGAATCAACGGAAGATTTAAAGAATGGT
CCTCTGGTAATTAA

Upstream 100 bases:

>100_bases
GACACTGGGAGAGCGAGCAGCAGACATATGAAGCACAGATATCACCTCAATGTAGTATTCCAGTTCACGCTGGGGTACTA
TTTTTTTGAGGTGATTAGAA

Downstream 100 bases:

>100_bases
ACTACCCGAGTTTTTAGACTCGGCCGGGGATCAATGCCCAGAGATTTCGGGTGGGAAAGTTGACATTATTTGGCTTTGAC
GCTTCGGCGTCTTTTTATTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 217; Mature: 216

Protein sequence:

>217_residues
MSFISGFLTKDFCSIVANGRMSQGAKTVGENYKKFMLAESNILIATTGNAQVADIIKDFIKRLHVQSNGAQLNWQLYVNV
IQQFVKETLKEAKDIDGNCVNQIVVICGVNGNKIMALAFGQTDAGYIQREYLPGENEQKFFTMTPPGVNPDAVTKEFISI
TNKIEIRTYSDIVIVQSKLQDYVAEIDSGKSVNTHKMGMGARIDGINGRFKEWSSGN

Sequences:

>Translated_217_residues
MSFISGFLTKDFCSIVANGRMSQGAKTVGENYKKFMLAESNILIATTGNAQVADIIKDFIKRLHVQSNGAQLNWQLYVNV
IQQFVKETLKEAKDIDGNCVNQIVVICGVNGNKIMALAFGQTDAGYIQREYLPGENEQKFFTMTPPGVNPDAVTKEFISI
TNKIEIRTYSDIVIVQSKLQDYVAEIDSGKSVNTHKMGMGARIDGINGRFKEWSSGN
>Mature_216_residues
SFISGFLTKDFCSIVANGRMSQGAKTVGENYKKFMLAESNILIATTGNAQVADIIKDFIKRLHVQSNGAQLNWQLYVNVI
QQFVKETLKEAKDIDGNCVNQIVVICGVNGNKIMALAFGQTDAGYIQREYLPGENEQKFFTMTPPGVNPDAVTKEFISIT
NKIEIRTYSDIVIVQSKLQDYVAEIDSGKSVNTHKMGMGARIDGINGRFKEWSSGN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24018; Mature: 23887

Theoretical pI: Translated: 8.04; Mature: 8.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFISGFLTKDFCSIVANGRMSQGAKTVGENYKKFMLAESNILIATTGNAQVADIIKDFI
CCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHEEEECCCEEEEECCCCHHHHHHHHHH
KRLHVQSNGAQLNWQLYVNVIQQFVKETLKEAKDIDGNCVNQIVVICGVNGNKIMALAFG
HHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCEEEEEEEC
QTDAGYIQREYLPGENEQKFFTMTPPGVNPDAVTKEFISITNKIEIRTYSDIVIVQSKLQ
CCCCCCEEEECCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCEEEEEEECCCEEHHHHHH
DYVAEIDSGKSVNTHKMGMGARIDGINGRFKEWSSGN
HHHHHHCCCCCCCCEECCCCCEEECCCCCCCCCCCCC
>Mature Secondary Structure 
SFISGFLTKDFCSIVANGRMSQGAKTVGENYKKFMLAESNILIATTGNAQVADIIKDFI
CHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHEEEECCCEEEEECCCCHHHHHHHHHH
KRLHVQSNGAQLNWQLYVNVIQQFVKETLKEAKDIDGNCVNQIVVICGVNGNKIMALAFG
HHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCEEEEEEEC
QTDAGYIQREYLPGENEQKFFTMTPPGVNPDAVTKEFISITNKIEIRTYSDIVIVQSKLQ
CCCCCCEEEECCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCEEEEEEECCCEEHHHHHH
DYVAEIDSGKSVNTHKMGMGARIDGINGRFKEWSSGN
HHHHHHCCCCCCCCEECCCCCEEECCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA