| Definition | Lactobacillus casei ATCC 334, complete genome. |
|---|---|
| Accession | NC_008526 |
| Length | 2,895,264 |
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The map label for this gene is 116494033
Identifier: 116494033
GI number: 116494033
Start: 491723
End: 492589
Strand: Direct
Name: 116494033
Synonym: LSEI_0474
Alternate gene names: NA
Gene position: 491723-492589 (Clockwise)
Preceding gene: 116494030
Following gene: 116494034
Centisome position: 16.98
GC content: 47.52
Gene sequence:
>867_bases ATGACACTTACTCATCCAATTACCGTCAGTTCATGGACATTAGGCGACCAATGCAAATTCGAAGATCGCGTTAAAGCAGC CGCAAAAGCTGGGTACGATGGCATCGGCTTACGCGCCGAAACCTACGTCGATGCGCTAAATGAAGGCTTAACAGATCAAG GGATTCTCGACATTCTTGATCAGTATCATATCAAGTGCACCGAGGTTGAATACATCGTGCAATGGTGTGAAGAACCGCGG ACATACGAGCAAAAATATAAGGAGCAAACCTGTTTCCATATGTGTCACTTGTTTGGCGTTGAACATATCAACACCGGTTT GATGGAAAGCTATCCAGTTGACTTCACGGCCAAGAAGTTGCAGGAACTGGCACATCGCGCAGCTTTGGCTGGTAATCTCA TCATTGCCCTCGAACCGATGCCATATAGCGGCATGCCAGATTTGAAGAAGACTTGGGCGATTCTCCAAGGCGCCGGTGCT CAAAACGTGATGATGTTGTTAGACATGTGGCACTGGGTTCGAGCAGACCAGCCGTTCGACTTGCTGACGAAGGAACAAGC TAAGCGCGTGATTTCAATTCAACTTGATGATGCTTACAAGCGGCCATATGCAAAGTCCATTTTGCGTGACGAGTCGATGC ACGATCGCTTAGCACCGGGAACTGGGTTTGAAGATCGGACTGAAAAGTTTATCAAGATGATTAAAGAGGCTGGCGTGGAT CCAAAAGTGATTGGCGTTGAAGTCATTTCTGATCACTACATGGCCAAAGGGATTGACTGGGTTGCCAAATATACTTACGA CACCACGGTGAAAACCTTGCAGGCGGCATGGCCGGAAATTTTGAAGGAAACTGTTGCGACACACTAA
Upstream 100 bases:
>100_bases CTCATTATAATGAATTAGAAGTCGCTTGTGCAACCGTATACAATTCAATTTGTAAACAAGATTGAAAAATTAATCACAAA TCATTTTGGGAGGCACTATC
Downstream 100 bases:
>100_bases AAGGAGCGTAATTTTTATGGCTGATTGGTTAGGTTTGAAAGACAAAGTTGTCGTTGTCACTGGTGCTGTTGGCGGTATGG GCACTCATTTTTGCGAAGCC
Product: sugar phosphate isomerase/epimerase
Products: NA
Alternate protein names: Xylose Isomerase Domain-Containing Protein; IolI Protein
Number of amino acids: Translated: 288; Mature: 287
Protein sequence:
>288_residues MTLTHPITVSSWTLGDQCKFEDRVKAAAKAGYDGIGLRAETYVDALNEGLTDQGILDILDQYHIKCTEVEYIVQWCEEPR TYEQKYKEQTCFHMCHLFGVEHINTGLMESYPVDFTAKKLQELAHRAALAGNLIIALEPMPYSGMPDLKKTWAILQGAGA QNVMMLLDMWHWVRADQPFDLLTKEQAKRVISIQLDDAYKRPYAKSILRDESMHDRLAPGTGFEDRTEKFIKMIKEAGVD PKVIGVEVISDHYMAKGIDWVAKYTYDTTVKTLQAAWPEILKETVATH
Sequences:
>Translated_288_residues MTLTHPITVSSWTLGDQCKFEDRVKAAAKAGYDGIGLRAETYVDALNEGLTDQGILDILDQYHIKCTEVEYIVQWCEEPR TYEQKYKEQTCFHMCHLFGVEHINTGLMESYPVDFTAKKLQELAHRAALAGNLIIALEPMPYSGMPDLKKTWAILQGAGA QNVMMLLDMWHWVRADQPFDLLTKEQAKRVISIQLDDAYKRPYAKSILRDESMHDRLAPGTGFEDRTEKFIKMIKEAGVD PKVIGVEVISDHYMAKGIDWVAKYTYDTTVKTLQAAWPEILKETVATH >Mature_287_residues TLTHPITVSSWTLGDQCKFEDRVKAAAKAGYDGIGLRAETYVDALNEGLTDQGILDILDQYHIKCTEVEYIVQWCEEPRT YEQKYKEQTCFHMCHLFGVEHINTGLMESYPVDFTAKKLQELAHRAALAGNLIIALEPMPYSGMPDLKKTWAILQGAGAQ NVMMLLDMWHWVRADQPFDLLTKEQAKRVISIQLDDAYKRPYAKSILRDESMHDRLAPGTGFEDRTEKFIKMIKEAGVDP KVIGVEVISDHYMAKGIDWVAKYTYDTTVKTLQAAWPEILKETVATH
Specific function: Unknown
COG id: COG1082
COG function: function code G; Sugar phosphate isomerases/epimerases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32806; Mature: 32675
Theoretical pI: Translated: 5.59; Mature: 5.59
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 5.6 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 5.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLTHPITVSSWTLGDQCKFEDRVKAAAKAGYDGIGLRAETYVDALNEGLTDQGILDILD CCCCCCEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHH QYHIKCTEVEYIVQWCEEPRTYEQKYKEQTCFHMCHLFGVEHINTGLMESYPVDFTAKKL HHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCHHHHHH QELAHRAALAGNLIIALEPMPYSGMPDLKKTWAILQGAGAQNVMMLLDMWHWVRADQPFD HHHHHHHHHHCCEEEEECCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHH LLTKEQAKRVISIQLDDAYKRPYAKSILRDESMHDRLAPGTGFEDRTEKFIKMIKEAGVD HHHHHHHHHEEEEEECHHHCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCC PKVIGVEVISDHYMAKGIDWVAKYTYDTTVKTLQAAWPEILKETVATH CEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure TLTHPITVSSWTLGDQCKFEDRVKAAAKAGYDGIGLRAETYVDALNEGLTDQGILDILD CCCCCEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHH QYHIKCTEVEYIVQWCEEPRTYEQKYKEQTCFHMCHLFGVEHINTGLMESYPVDFTAKKL HHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCHHHHHH QELAHRAALAGNLIIALEPMPYSGMPDLKKTWAILQGAGAQNVMMLLDMWHWVRADQPFD HHHHHHHHHHCCEEEEECCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHH LLTKEQAKRVISIQLDDAYKRPYAKSILRDESMHDRLAPGTGFEDRTEKFIKMIKEAGVD HHHHHHHHHEEEEEECHHHCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCC PKVIGVEVISDHYMAKGIDWVAKYTYDTTVKTLQAAWPEILKETVATH CEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA