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The map label for this gene is yhfX [H]

Identifier: 116493948

GI number: 116493948

Start: 381611

End: 382783

Strand: Direct

Name: yhfX [H]

Synonym: LSEI_0382

Alternate gene names: 116493948

Gene position: 381611-382783 (Clockwise)

Preceding gene: 116493947

Following gene: 116493949

Centisome position: 13.18

GC content: 42.88

Gene sequence:

>1173_bases
ATGTTCTTAAAACAATTGGAAAAACTAAATCCAGAATTAATTCAATATGCCTTTGAATTGCATCATTCGGGGAAAATTTT
ACCGGATACGTATGTGATTGATTTGGATATGATTCATCAAAACACAACTCATGTGGTTGCTGAAGCTAAAAAAAACCATG
TTGAGTTACTTTATATGACGAAACAAGTTGGTCGTAATCCTGTGATTGCGCAGGAAGTTGTCAACGCTGGCATCCCAGAG
GCTGTGGTGGTTGATTTTCGTGAGGCTGAAACTTTTATGGAAAACGGACTGGCCTTAGGCAATGTCGGGCATTTGGTCCA
ACCGCCAAAACATTTTCTCACTCGTCTTCTGAAGTATGGAACAAAATACGTCACGATGTATTCACTCGAAAACACCCAAG
CGTTGAATGAAGCAGCAAAGGAAGTCGGTATCAAGCAAAAGGTGCTACTTAAAGTTGTGGGCAATGGTGATGATATTTAT
CCAGGCCAAACTGGAGGTTTTACCTTAGCGGAACTAGACAAGCAGCTTAAGCAGCTTAAAACACTGTCGAATATCGCGCT
TGTTGGCATAACGACATTTCCGGCGATTCTATATAACGAGTCACAAGAAGATTTTGCAGCGACAGCAAATGTCAAAACAA
TTGACGAAGCTAAAAGTATTTTTAGCAAACATGGTCTAAAGGCACAGGTCGTGAGCTTGCCGTCAGCGACCTCAACTACC
TCATTGCCATTGATTAAGCAACTTGGCGGTAACGAAGGCGAACCTGGGCATGCGCTGACAGGGACGACACCGCTGCATGC
GGTTAAGGAACAACCTGAGAAGCCTGCCTACTGTTACGTGAGCGAAGTTTCTCATACATTTGGCCCTCACAGTTACATTT
TCGGAGGCGGCTGGTACCGGCGTGGTCACTTAAAGAATGCCTTAATTCAAGATGGTGATCAATACACACATGCACATGTG
TTACCACTTGAAAACTCGAATATCGATTATTACTTGGAACTAGATCAGCAGTTTAAGTCAGGGTTGCCGGTGATCATGGC
TTTTCGTACGCAAATTTTTGTCACAAGAAGCACAGTTGCTTTAGTTCGTGGTTTACACACAGCCGACAAAACACCTGAAT
TAGTTGGTTTGTACGATAGCCAAGGAAAAAAATTACCAGAAGGGATGCAATAG

Upstream 100 bases:

>100_bases
CAAATCTATTAAAAACAACGATTCGAATAAATCCATATCGTTGCGGTGCTGACACCATCATGAGGATCTTAGCGGAAAGT
GTCGAGAAGGTGATGGCGTA

Downstream 100 bases:

>100_bases
CATGGGCAAATACGGTGTCATTGTTTTAGACAGTTTTGGTGTTGGTGCCATGGATGATGTTCCTAAAGTACGCCCGGATG
ACATCGGGGCAAACACAGCT

Product: amino acid racemase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 390; Mature: 390

Protein sequence:

>390_residues
MFLKQLEKLNPELIQYAFELHHSGKILPDTYVIDLDMIHQNTTHVVAEAKKNHVELLYMTKQVGRNPVIAQEVVNAGIPE
AVVVDFREAETFMENGLALGNVGHLVQPPKHFLTRLLKYGTKYVTMYSLENTQALNEAAKEVGIKQKVLLKVVGNGDDIY
PGQTGGFTLAELDKQLKQLKTLSNIALVGITTFPAILYNESQEDFAATANVKTIDEAKSIFSKHGLKAQVVSLPSATSTT
SLPLIKQLGGNEGEPGHALTGTTPLHAVKEQPEKPAYCYVSEVSHTFGPHSYIFGGGWYRRGHLKNALIQDGDQYTHAHV
LPLENSNIDYYLELDQQFKSGLPVIMAFRTQIFVTRSTVALVRGLHTADKTPELVGLYDSQGKKLPEGMQ

Sequences:

>Translated_390_residues
MFLKQLEKLNPELIQYAFELHHSGKILPDTYVIDLDMIHQNTTHVVAEAKKNHVELLYMTKQVGRNPVIAQEVVNAGIPE
AVVVDFREAETFMENGLALGNVGHLVQPPKHFLTRLLKYGTKYVTMYSLENTQALNEAAKEVGIKQKVLLKVVGNGDDIY
PGQTGGFTLAELDKQLKQLKTLSNIALVGITTFPAILYNESQEDFAATANVKTIDEAKSIFSKHGLKAQVVSLPSATSTT
SLPLIKQLGGNEGEPGHALTGTTPLHAVKEQPEKPAYCYVSEVSHTFGPHSYIFGGGWYRRGHLKNALIQDGDQYTHAHV
LPLENSNIDYYLELDQQFKSGLPVIMAFRTQIFVTRSTVALVRGLHTADKTPELVGLYDSQGKKLPEGMQ
>Mature_390_residues
MFLKQLEKLNPELIQYAFELHHSGKILPDTYVIDLDMIHQNTTHVVAEAKKNHVELLYMTKQVGRNPVIAQEVVNAGIPE
AVVVDFREAETFMENGLALGNVGHLVQPPKHFLTRLLKYGTKYVTMYSLENTQALNEAAKEVGIKQKVLLKVVGNGDDIY
PGQTGGFTLAELDKQLKQLKTLSNIALVGITTFPAILYNESQEDFAATANVKTIDEAKSIFSKHGLKAQVVSLPSATSTT
SLPLIKQLGGNEGEPGHALTGTTPLHAVKEQPEKPAYCYVSEVSHTFGPHSYIFGGGWYRRGHLKNALIQDGDQYTHAHV
LPLENSNIDYYLELDQQFKSGLPVIMAFRTQIFVTRSTVALVRGLHTADKTPELVGLYDSQGKKLPEGMQ

Specific function: Unknown

COG id: COG3457

COG function: function code E; Predicted amino acid racemase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789782, Length=387, Percent_Identity=41.0852713178295, Blast_Score=306, Evalue=1e-84,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 43104; Mature: 43104

Theoretical pI: Translated: 6.84; Mature: 6.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFLKQLEKLNPELIQYAFELHHSGKILPDTYVIDLDMIHQNTTHVVAEAKKNHVELLYMT
CCHHHHHHCCHHHHHHHHHHHCCCCCCCCEEEEEEEHHCCCCHHHHHHHCCCCEEEEEEE
KQVGRNPVIAQEVVNAGIPEAVVVDFREAETFMENGLALGNVGHLVQPPKHFLTRLLKYG
HHHCCCCCHHHHHHHCCCCHHEEEEHHHHHHHHHCCCEECCCCCCCCCHHHHHHHHHHCC
TKYVTMYSLENTQALNEAAKEVGIKQKVLLKVVGNGDDIYPGQTGGFTLAELDKQLKQLK
CEEEEEEECCCHHHHHHHHHHCCCHHEEEEEEECCCCCCCCCCCCCEEHHHHHHHHHHHH
TLSNIALVGITTFPAILYNESQEDFAATANVKTIDEAKSIFSKHGLKAQVVSLPSATSTT
HHHHEEEEEHHHHHHHEECCCCHHHHHHCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCC
SLPLIKQLGGNEGEPGHALTGTTPLHAVKEQPEKPAYCYVSEVSHTFGPHSYIFGGGWYR
CCHHHHHHCCCCCCCCCEECCCCCHHHHHCCCCCCCEEEEEHHHHCCCCCCEEECCCEEE
RGHLKNALIQDGDQYTHAHVLPLENSNIDYYLELDQQFKSGLPVIMAFRTQIFVTRSTVA
CCHHHHHHHCCCCCCCEEEEEEECCCCCEEEEEECHHHHCCCCEEEEEHHHHEEEHHHHH
LVRGLHTADKTPELVGLYDSQGKKLPEGMQ
HHHHHHCCCCCCCEEEEECCCCCCCCCCCC
>Mature Secondary Structure
MFLKQLEKLNPELIQYAFELHHSGKILPDTYVIDLDMIHQNTTHVVAEAKKNHVELLYMT
CCHHHHHHCCHHHHHHHHHHHCCCCCCCCEEEEEEEHHCCCCHHHHHHHCCCCEEEEEEE
KQVGRNPVIAQEVVNAGIPEAVVVDFREAETFMENGLALGNVGHLVQPPKHFLTRLLKYG
HHHCCCCCHHHHHHHCCCCHHEEEEHHHHHHHHHCCCEECCCCCCCCCHHHHHHHHHHCC
TKYVTMYSLENTQALNEAAKEVGIKQKVLLKVVGNGDDIYPGQTGGFTLAELDKQLKQLK
CEEEEEEECCCHHHHHHHHHHCCCHHEEEEEEECCCCCCCCCCCCCEEHHHHHHHHHHHH
TLSNIALVGITTFPAILYNESQEDFAATANVKTIDEAKSIFSKHGLKAQVVSLPSATSTT
HHHHEEEEEHHHHHHHEECCCCHHHHHHCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCC
SLPLIKQLGGNEGEPGHALTGTTPLHAVKEQPEKPAYCYVSEVSHTFGPHSYIFGGGWYR
CCHHHHHHCCCCCCCCCEECCCCCHHHHHCCCCCCCEEEEEHHHHCCCCCCEEECCCEEE
RGHLKNALIQDGDQYTHAHVLPLENSNIDYYLELDQQFKSGLPVIMAFRTQIFVTRSTVA
CCHHHHHHHCCCCCCCEEEEEEECCCCCEEEEEECHHHHCCCCEEEEEHHHHEEEHHHHH
LVRGLHTADKTPELVGLYDSQGKKLPEGMQ
HHHHHHCCCCCCCEEEEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]