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The map label for this gene is rbsC [H]

Identifier: 116493877

GI number: 116493877

Start: 309502

End: 310482

Strand: Direct

Name: rbsC [H]

Synonym: LSEI_0309

Alternate gene names: 116493877

Gene position: 309502-310482 (Clockwise)

Preceding gene: 116493876

Following gene: 116493878

Centisome position: 10.69

GC content: 51.38

Gene sequence:

>981_bases
ATGCAGGAGCAATCTAAAGCAAAAACAAGTAGCAAAATTGATGTGAAGAAAATATTTAGTCGGCTAGGACCGTTATTGGC
ACTGGTGGTATTGGTCATTCTCGTGACGATCATGAGTCCCACCTTTGTATCACCGGCTAACCTATTAAACCTGTTACGGC
AAGTCTCGATTAACGCAGTGATTGCCTTCGGGATGACCTTCGTGATTTTGACCGGCGGCATTGACTTGTCTGTCGGTTCA
ATCTTGGCTTTATCAGGGGCAGTCACAGCGTCCATGCTTGCCAGCGGTTTTGCGGCCCCGCTTGCGTTACTGGCAGGCCT
CGTCCTCGGCGCCATTTTCGGCTTGCTGAATGGTATCCTGATCGCTTATGGGAAAGCCGCGCCATTTATTGCGACCTTGG
CGACCATGACCATTTTCCGTGGGGCCACGTATGTGTTCACCAACGGGAATCCCATCACTGGCGCGAAAATGAACAGCAGT
TTCTTATTCCAGTTCATGGGCCGCGGGTATCTGTTTGGCATTCCATTCCCGATTATCATCATGCTCGTGGCTTACGGTGT
GCTATTCGTCCTGCTACACAAGACCTCTTTTGGTCGGAAAACCTATGCCTTGGGTGGCAATGAAACGGCTGCCCGGATCG
CTGGGGTACGCACCAAAATGGTCACCATGCTGATTTACACGATTTCTGGGTTAATGGCTGCTATTGCCGGTATCATCCTG
ACATCACGGTTAAGCTCCGCGCAACCAGATGCCGGGACATCCTACGAAATGGATGCCATCGCCGCTGTCGTCCTTGGCGG
CACATCGCTGGCCGGAGGCAAAGGCCGCATTTTCGGCACGCTGATTGGTGCGTTGATCATCGGCACACTGAACAACGGGA
TGAACTTACTGGGCATTTCTAGTTTCTACCAGCAGATTGTCAAAGGGATCGTGATCTTGATTGCGGTTCTGCTCGATCGC
CGGTCTTCTAATAATGGGTAA

Upstream 100 bases:

>100_bases
ATTGCTGTTGTGTATGAAGGCAAAATCACTGGCATTTTAGATGGAAAAACCGCGACGCAAGAGTCGATCATGACACTGGC
AACAGGGGGAGTGGAAGAGC

Downstream 100 bases:

>100_bases
CAAAACGTGAGCGCGGGCTCGCGGCAAAAGACAAAACTCTAGGGGGAGAAATTGACATGAAACAATCACTCAAACGCTTT
TTAATGGTCGCTGTTGTTGC

Product: ribose/xylose/arabinose/galactoside ABC-type transporter permease

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 326; Mature: 326

Protein sequence:

>326_residues
MQEQSKAKTSSKIDVKKIFSRLGPLLALVVLVILVTIMSPTFVSPANLLNLLRQVSINAVIAFGMTFVILTGGIDLSVGS
ILALSGAVTASMLASGFAAPLALLAGLVLGAIFGLLNGILIAYGKAAPFIATLATMTIFRGATYVFTNGNPITGAKMNSS
FLFQFMGRGYLFGIPFPIIIMLVAYGVLFVLLHKTSFGRKTYALGGNETAARIAGVRTKMVTMLIYTISGLMAAIAGIIL
TSRLSSAQPDAGTSYEMDAIAAVVLGGTSLAGGKGRIFGTLIGALIIGTLNNGMNLLGISSFYQQIVKGIVILIAVLLDR
RSSNNG

Sequences:

>Translated_326_residues
MQEQSKAKTSSKIDVKKIFSRLGPLLALVVLVILVTIMSPTFVSPANLLNLLRQVSINAVIAFGMTFVILTGGIDLSVGS
ILALSGAVTASMLASGFAAPLALLAGLVLGAIFGLLNGILIAYGKAAPFIATLATMTIFRGATYVFTNGNPITGAKMNSS
FLFQFMGRGYLFGIPFPIIIMLVAYGVLFVLLHKTSFGRKTYALGGNETAARIAGVRTKMVTMLIYTISGLMAAIAGIIL
TSRLSSAQPDAGTSYEMDAIAAVVLGGTSLAGGKGRIFGTLIGALIIGTLNNGMNLLGISSFYQQIVKGIVILIAVLLDR
RSSNNG
>Mature_326_residues
MQEQSKAKTSSKIDVKKIFSRLGPLLALVVLVILVTIMSPTFVSPANLLNLLRQVSINAVIAFGMTFVILTGGIDLSVGS
ILALSGAVTASMLASGFAAPLALLAGLVLGAIFGLLNGILIAYGKAAPFIATLATMTIFRGATYVFTNGNPITGAKMNSS
FLFQFMGRGYLFGIPFPIIIMLVAYGVLFVLLHKTSFGRKTYALGGNETAARIAGVRTKMVTMLIYTISGLMAAIAGIIL
TSRLSSAQPDAGTSYEMDAIAAVVLGGTSLAGGKGRIFGTLIGALIIGTLNNGMNLLGISSFYQQIVKGIVILIAVLLDR
RSSNNG

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=320, Percent_Identity=50.9375, Blast_Score=294, Evalue=5e-81,
Organism=Escherichia coli, GI1790524, Length=321, Percent_Identity=39.5638629283489, Blast_Score=206, Evalue=2e-54,
Organism=Escherichia coli, GI145693152, Length=311, Percent_Identity=41.4790996784566, Blast_Score=198, Evalue=3e-52,
Organism=Escherichia coli, GI1788896, Length=325, Percent_Identity=38.1538461538462, Blast_Score=197, Evalue=1e-51,
Organism=Escherichia coli, GI1789992, Length=368, Percent_Identity=35.3260869565217, Blast_Score=182, Evalue=3e-47,
Organism=Escherichia coli, GI145693214, Length=265, Percent_Identity=44.1509433962264, Blast_Score=155, Evalue=2e-39,
Organism=Escherichia coli, GI87082395, Length=286, Percent_Identity=38.4615384615385, Blast_Score=154, Evalue=9e-39,
Organism=Escherichia coli, GI1788471, Length=313, Percent_Identity=37.3801916932907, Blast_Score=139, Evalue=2e-34,
Organism=Escherichia coli, GI1787793, Length=267, Percent_Identity=36.7041198501873, Blast_Score=130, Evalue=1e-31,
Organism=Escherichia coli, GI1787794, Length=266, Percent_Identity=35.3383458646617, Blast_Score=124, Evalue=7e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 33922; Mature: 33922

Theoretical pI: Translated: 10.91; Mature: 10.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQEQSKAKTSSKIDVKKIFSRLGPLLALVVLVILVTIMSPTFVSPANLLNLLRQVSINAV
CCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
IAFGMTFVILTGGIDLSVGSILALSGAVTASMLASGFAAPLALLAGLVLGAIFGLLNGIL
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IAYGKAAPFIATLATMTIFRGATYVFTNGNPITGAKMNSSFLFQFMGRGYLFGIPFPIII
HHHCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHCCCCEECCCHHHHH
MLVAYGVLFVLLHKTSFGRKTYALGGNETAARIAGVRTKMVTMLIYTISGLMAAIAGIIL
HHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TSRLSSAQPDAGTSYEMDAIAAVVLGGTSLAGGKGRIFGTLIGALIIGTLNNGMNLLGIS
HHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHH
SFYQQIVKGIVILIAVLLDRRSSNNG
HHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MQEQSKAKTSSKIDVKKIFSRLGPLLALVVLVILVTIMSPTFVSPANLLNLLRQVSINAV
CCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
IAFGMTFVILTGGIDLSVGSILALSGAVTASMLASGFAAPLALLAGLVLGAIFGLLNGIL
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IAYGKAAPFIATLATMTIFRGATYVFTNGNPITGAKMNSSFLFQFMGRGYLFGIPFPIII
HHHCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHCCCCEECCCHHHHH
MLVAYGVLFVLLHKTSFGRKTYALGGNETAARIAGVRTKMVTMLIYTISGLMAAIAGIIL
HHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TSRLSSAQPDAGTSYEMDAIAAVVLGGTSLAGGKGRIFGTLIGALIIGTLNNGMNLLGIS
HHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHH
SFYQQIVKGIVILIAVLLDRRSSNNG
HHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]