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The map label for this gene is lytR [H]

Identifier: 116493818

GI number: 116493818

Start: 247115

End: 248209

Strand: Direct

Name: lytR [H]

Synonym: LSEI_0247

Alternate gene names: 116493818

Gene position: 247115-248209 (Clockwise)

Preceding gene: 116493814

Following gene: 116493821

Centisome position: 8.54

GC content: 43.74

Gene sequence:

>1095_bases
ATGGACAAGCAACAAAACTCAGATCAACAAACATTAAAACGCAAACCAAAACGACGTCATCCGATTTTACGTACCCTAAC
AGTCATTTTGCTTGTCGCCCTTTTCTTGGCTGGCGGATATGCCGCCCGATTTTATTCACAAGCCAAAAAGGCGGTTGCGA
AAACATATGATCCAGTTAGTACTAAGGCGGTCAGTTCAGATCTCGATGGCAAAAAACCGATCAGTATTCTTCTACTAGGA
ACCGATACCGGTGCCTTTGGTCGGAAAGATACCGGTCGATCTGACACTATGATGCTGGTCACGATCAATCCTAAAGAGAA
GAAAACAACGATGACCAGTATTCCTCGTGACACGTTGGCGGAAATGGTGGGCACAGGAAATGATTCACCTACCTACGAAA
AAATTAACTCTGCCTATGCATATGGAAAATCTAGCGCAGCTATTAAAACCGTCGAGAAGTTATTAAATGTCCCGATTGAT
TATTATGTGACGGTTAATATGGAGGGCCTACAGAAGATTGTTGACGCTGTTGGCGGTGTCGATGTCAATGTTCCATTTAC
TTGGACAGATGCCAATACCGGTGGACAGACATTCAAAAAAGGTAAAGCTCATCTTAATGGGGAACTGGCCTTAGCATATG
CTCGAATGCGTGATGAAGATCCTGAAGGCGACTATGGGCGGCAGAAACGCCAACAAGAAGTCATCAATCAGATTGTTAAA
CACCTTATGTCGGTCAAATCGTTGACAAATTACCAAAAGGTCATGGATTCCTTATCATCTAGCATGCGGACCAACCTAAC
ATTTGATGATATGATGGCAATTGCGCAAAATTATCGCGCTTCAGCAACTACCATTGATCGTCAACAGCTTAAAGGGATTG
GCGTTTATATTGATGAGGCTGCTTATCAGGTGATGACAACCGAAACGCTTCAAAAGATGTCCAATGAGCTGCGTGGGCAG
TTAGGGCTTGAAAGCAAGACGCTAAGTAATTTTAATACTCAGCAAAATGAAATTAACAATGCGAATGGATTTGATTGGAC
AGCGAACAATCCGGTCTACACTGTGTCGCTCGATGGTGCGACAACCGGACCGTGA

Upstream 100 bases:

>100_bases
TTAATGTTACCATATTGAGGCGACATTTGAGGTAAATCCCTTTTTTCTTCATAATTATCTGCTAAACTACTCTGGAAACT
AAAAGTGGAGTGAAGCTCGA

Downstream 100 bases:

>100_bases
TCAAAAAAACAGCAGCACTCTGGCTTCATTGCCAAGGCTGCTGTTTTTTTGTGAGCGCGAGTAGGAGCGCTCAGGCTTCT
GCGACTGGGGGCGCGTCATG

Product: transcriptional regulator

Products: NA

Alternate protein names: Membrane-bound protein lytR [H]

Number of amino acids: Translated: 364; Mature: 364

Protein sequence:

>364_residues
MDKQQNSDQQTLKRKPKRRHPILRTLTVILLVALFLAGGYAARFYSQAKKAVAKTYDPVSTKAVSSDLDGKKPISILLLG
TDTGAFGRKDTGRSDTMMLVTINPKEKKTTMTSIPRDTLAEMVGTGNDSPTYEKINSAYAYGKSSAAIKTVEKLLNVPID
YYVTVNMEGLQKIVDAVGGVDVNVPFTWTDANTGGQTFKKGKAHLNGELALAYARMRDEDPEGDYGRQKRQQEVINQIVK
HLMSVKSLTNYQKVMDSLSSSMRTNLTFDDMMAIAQNYRASATTIDRQQLKGIGVYIDEAAYQVMTTETLQKMSNELRGQ
LGLESKTLSNFNTQQNEINNANGFDWTANNPVYTVSLDGATTGP

Sequences:

>Translated_364_residues
MDKQQNSDQQTLKRKPKRRHPILRTLTVILLVALFLAGGYAARFYSQAKKAVAKTYDPVSTKAVSSDLDGKKPISILLLG
TDTGAFGRKDTGRSDTMMLVTINPKEKKTTMTSIPRDTLAEMVGTGNDSPTYEKINSAYAYGKSSAAIKTVEKLLNVPID
YYVTVNMEGLQKIVDAVGGVDVNVPFTWTDANTGGQTFKKGKAHLNGELALAYARMRDEDPEGDYGRQKRQQEVINQIVK
HLMSVKSLTNYQKVMDSLSSSMRTNLTFDDMMAIAQNYRASATTIDRQQLKGIGVYIDEAAYQVMTTETLQKMSNELRGQ
LGLESKTLSNFNTQQNEINNANGFDWTANNPVYTVSLDGATTGP
>Mature_364_residues
MDKQQNSDQQTLKRKPKRRHPILRTLTVILLVALFLAGGYAARFYSQAKKAVAKTYDPVSTKAVSSDLDGKKPISILLLG
TDTGAFGRKDTGRSDTMMLVTINPKEKKTTMTSIPRDTLAEMVGTGNDSPTYEKINSAYAYGKSSAAIKTVEKLLNVPID
YYVTVNMEGLQKIVDAVGGVDVNVPFTWTDANTGGQTFKKGKAHLNGELALAYARMRDEDPEGDYGRQKRQQEVINQIVK
HLMSVKSLTNYQKVMDSLSSSMRTNLTFDDMMAIAQNYRASATTIDRQQLKGIGVYIDEAAYQVMTTETLQKMSNELRGQ
LGLESKTLSNFNTQQNEINNANGFDWTANNPVYTVSLDGATTGP

Specific function: Attenuator role for operon expression [H]

COG id: COG1316

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the LytR/CpsA/Psr regulatory protein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004474 [H]

Pfam domain/function: PF03816 LytR_cpsA_psr [H]

EC number: NA

Molecular weight: Translated: 40173; Mature: 40173

Theoretical pI: Translated: 9.67; Mature: 9.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKQQNSDQQTLKRKPKRRHPILRTLTVILLVALFLAGGYAARFYSQAKKAVAKTYDPVS
CCCCCCCHHHHHHCCCHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCH
TKAVSSDLDGKKPISILLLGTDTGAFGRKDTGRSDTMMLVTINPKEKKTTMTSIPRDTLA
HHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHCCHHHHH
EMVGTGNDSPTYEKINSAYAYGKSSAAIKTVEKLLNVPIDYYVTVNMEGLQKIVDAVGGV
HHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEEEHHHHHHHHHHHCCC
DVNVPFTWTDANTGGQTFKKGKAHLNGELALAYARMRDEDPEGDYGRQKRQQEVINQIVK
EECCEEEECCCCCCCHHHHHCHHHCCCCEEEEEHHHCCCCCCCCHHHHHHHHHHHHHHHH
HLMSVKSLTNYQKVMDSLSSSMRTNLTFDDMMAIAQNYRASATTIDRQQLKGIGVYIDEA
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEHHH
AYQVMTTETLQKMSNELRGQLGLESKTLSNFNTQQNEINNANGFDWTANNPVYTVSLDGA
HHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCHHHCCCCCCCCCCCCCCEEEEEECCC
TTGP
CCCC
>Mature Secondary Structure
MDKQQNSDQQTLKRKPKRRHPILRTLTVILLVALFLAGGYAARFYSQAKKAVAKTYDPVS
CCCCCCCHHHHHHCCCHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCH
TKAVSSDLDGKKPISILLLGTDTGAFGRKDTGRSDTMMLVTINPKEKKTTMTSIPRDTLA
HHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHCCHHHHH
EMVGTGNDSPTYEKINSAYAYGKSSAAIKTVEKLLNVPIDYYVTVNMEGLQKIVDAVGGV
HHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEEEHHHHHHHHHHHCCC
DVNVPFTWTDANTGGQTFKKGKAHLNGELALAYARMRDEDPEGDYGRQKRQQEVINQIVK
EECCEEEECCCCCCCHHHHHCHHHCCCCEEEEEHHHCCCCCCCCHHHHHHHHHHHHHHHH
HLMSVKSLTNYQKVMDSLSSSMRTNLTFDDMMAIAQNYRASATTIDRQQLKGIGVYIDEA
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEHHH
AYQVMTTETLQKMSNELRGQLGLESKTLSNFNTQQNEINNANGFDWTANNPVYTVSLDGA
HHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCHHHCCCCCCCCCCCCCCEEEEEECCC
TTGP
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12663927 [H]