Definition Lactobacillus casei ATCC 334, complete genome.
Accession NC_008526
Length 2,895,264

Click here to switch to the map view.

The map label for this gene is 116493724

Identifier: 116493724

GI number: 116493724

Start: 151508

End: 151831

Strand: Direct

Name: 116493724

Synonym: LSEI_0152

Alternate gene names: NA

Gene position: 151508-151831 (Clockwise)

Preceding gene: 116493723

Following gene: 116493726

Centisome position: 5.23

GC content: 50.0

Gene sequence:

>324_bases
ATGACACTAAAAACAATTTTTCATTTAGATACAACTGAACGCTGGCCACACTTGGCGTCCAATCTTGACAACTATCTGGC
GGCGGAGCCAGACGCAGACATCGAAGTGCTGGTGAATGGGGATGGCATCACCGTCTTCTTTGACCAAAAGGTAGCCGCCT
TCATCGCTGCGCATCCTCAGGTTCACTTTTTTGCCTGCCACAATTCCCTACAGCAACGTCACTTGGACGAAACAAAATTA
CCGGCTGGCGTACCAGTGGTGCCGGTTGGCGTTGTTAAACTGGCACAAGCTGAGGCGGCTGGGTATGGGTATATAAAGCC
TTAA

Upstream 100 bases:

>100_bases
GACACTGCCACTGCGCTGTAACCAAACGCGCAGGCGGCAATCTGTTTCAGCTTCTTTTTGATGGGCGACTCGTGGTATCC
TCAAGCTGAGGTGAGACAAG

Downstream 100 bases:

>100_bases
AAATAGACCTGCTCATTTTGAGCCTGCCTTATTATATGGACGAGGTCATGTCATAGAGGAGAAGGCGTTAATTATGCCTT
CCCCGCCGTCTGCGGTTCCG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 107; Mature: 106

Protein sequence:

>107_residues
MTLKTIFHLDTTERWPHLASNLDNYLAAEPDADIEVLVNGDGITVFFDQKVAAFIAAHPQVHFFACHNSLQQRHLDETKL
PAGVPVVPVGVVKLAQAEAAGYGYIKP

Sequences:

>Translated_107_residues
MTLKTIFHLDTTERWPHLASNLDNYLAAEPDADIEVLVNGDGITVFFDQKVAAFIAAHPQVHFFACHNSLQQRHLDETKL
PAGVPVVPVGVVKLAQAEAAGYGYIKP
>Mature_106_residues
TLKTIFHLDTTERWPHLASNLDNYLAAEPDADIEVLVNGDGITVFFDQKVAAFIAAHPQVHFFACHNSLQQRHLDETKLP
AGVPVVPVGVVKLAQAEAAGYGYIKP

Specific function: Unknown

COG id: COG1416

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 11721; Mature: 11590

Theoretical pI: Translated: 5.88; Mature: 5.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLKTIFHLDTTERWPHLASNLDNYLAAEPDADIEVLVNGDGITVFFDQKVAAFIAAHPQ
CCCEEEEECCCCCCCHHHHHCHHHHCCCCCCCCEEEEECCCCEEEEECCHHEEHHHCCCC
VHFFACHNSLQQRHLDETKLPAGVPVVPVGVVKLAQAEAAGYGYIKP
EEEEEEHHHHHHHCCCCCCCCCCCCEECHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
TLKTIFHLDTTERWPHLASNLDNYLAAEPDADIEVLVNGDGITVFFDQKVAAFIAAHPQ
CCEEEEECCCCCCCHHHHHCHHHHCCCCCCCCEEEEECCCCEEEEECCHHEEHHHCCCC
VHFFACHNSLQQRHLDETKLPAGVPVVPVGVVKLAQAEAAGYGYIKP
EEEEEEHHHHHHHCCCCCCCCCCCCEECHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA