Click here to switch to the map view.

The map label for this gene is ccpB [H]

Identifier: 116493535

GI number: 116493535

Start: 1787563

End: 1788252

Strand: Direct

Name: ccpB [H]

Synonym: PEPE_1809

Alternate gene names: 116493535

Gene position: 1787563-1788252 (Clockwise)

Preceding gene: 116493533

Following gene: 116493536

Centisome position: 97.55

GC content: 37.39

Gene sequence:

>690_bases
ATGGACTTAGCTTTTGCTGCTGAATATAATGTTCTTTTTTTGGAATCTCAGTATGACGAAAAGTTAGAACAAAAACATTT
AGAAAAACTTCACCGAAAAGCCTTTGATGCGCTAATTTTTATATCTCGCAAATTGCCACTAACTGAATTAATCAAATATC
AAAAATATGGCCCCATCGTATGCTGTGAAAATCCACAGGGCAATCCCATTGCGGCTGCCTATACGCTCCGTGAAAGTACC
TATCAACAGGCGTTCGAATGGGTTAAACAAGGTGGCTATAGCAAAATTGCTATTATTTTAAGTCGTCCGTACGGAAACAG
TGCCACGAGTAAAATTATTTTTCACTCTTACAAAAAAGTTTTTGGAACTTTCCCAGACTCCAATTTAGTCTATACGGATT
GCTACAATTACAATGATGGCTACCAATCCGCTCATTTAATTGCAAGAGATACGCCAGATTTCATTTTTGGTAATAGCGAC
GATATTATTGCTGGCATTTATCAATACTACCTAGATAATAATTTAGAGTTGCCGGCCTTAATGGGACAGGAAAATCAAAT
ATCTGGAAGTCTATTAAAAATCCCCACGATTGATCACCATCTAAAAATGATTGGTCAAGCCGCTTGCGAACTTGCTATTA
CGGGCGCTATCAAATCGGTTTCCATCGAGTCAGAATTTATCATCAGATAA

Upstream 100 bases:

>100_bases
GCCATTGCTCGTGACCTGAGTAAGGGCCAGACGTTTACGATTGGTGTGGTAGTACCTCATATGCGTCATCCCTTTTTTTT
CTGAGTTAACCCATGGAATT

Downstream 100 bases:

>100_bases
CGTCATCCTAATATCACATGCTGTAGTAAAATGAGACGATGAAGTCATCATCTCATTTTTTGTTATAATGACTTCTATAA
ATTTTATTCATAGGAGATTA

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 229; Mature: 229

Protein sequence:

>229_residues
MDLAFAAEYNVLFLESQYDEKLEQKHLEKLHRKAFDALIFISRKLPLTELIKYQKYGPIVCCENPQGNPIAAAYTLREST
YQQAFEWVKQGGYSKIAIILSRPYGNSATSKIIFHSYKKVFGTFPDSNLVYTDCYNYNDGYQSAHLIARDTPDFIFGNSD
DIIAGIYQYYLDNNLELPALMGQENQISGSLLKIPTIDHHLKMIGQAACELAITGAIKSVSIESEFIIR

Sequences:

>Translated_229_residues
MDLAFAAEYNVLFLESQYDEKLEQKHLEKLHRKAFDALIFISRKLPLTELIKYQKYGPIVCCENPQGNPIAAAYTLREST
YQQAFEWVKQGGYSKIAIILSRPYGNSATSKIIFHSYKKVFGTFPDSNLVYTDCYNYNDGYQSAHLIARDTPDFIFGNSD
DIIAGIYQYYLDNNLELPALMGQENQISGSLLKIPTIDHHLKMIGQAACELAITGAIKSVSIESEFIIR
>Mature_229_residues
MDLAFAAEYNVLFLESQYDEKLEQKHLEKLHRKAFDALIFISRKLPLTELIKYQKYGPIVCCENPQGNPIAAAYTLREST
YQQAFEWVKQGGYSKIAIILSRPYGNSATSKIIFHSYKKVFGTFPDSNLVYTDCYNYNDGYQSAHLIARDTPDFIFGNSD
DIIAGIYQYYLDNNLELPALMGQENQISGSLLKIPTIDHHLKMIGQAACELAITGAIKSVSIESEFIIR

Specific function: Transcriptional regulator involved in catabolite repression of several operons [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lacI-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000843
- InterPro:   IPR010982
- InterPro:   IPR001761 [H]

Pfam domain/function: PF00356 LacI; PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 25974; Mature: 25974

Theoretical pI: Translated: 5.94; Mature: 5.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLAFAAEYNVLFLESQYDEKLEQKHLEKLHRKAFDALIFISRKLPLTELIKYQKYGPIV
CCCEEEECCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCEE
CCENPQGNPIAAAYTLRESTYQQAFEWVKQGGYSKIAIILSRPYGNSATSKIIFHSYKKV
EECCCCCCEEEEEEEHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHH
FGTFPDSNLVYTDCYNYNDGYQSAHLIARDTPDFIFGNSDDIIAGIYQYYLDNNLELPAL
HCCCCCCCEEEEEECCCCCCCCCEEEEEECCCCEEECCCCHHHHHHHHHHHCCCCCCCCC
MGQENQISGSLLKIPTIDHHLKMIGQAACELAITGAIKSVSIESEFIIR
CCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHEECCEEEEEECCEEEEC
>Mature Secondary Structure
MDLAFAAEYNVLFLESQYDEKLEQKHLEKLHRKAFDALIFISRKLPLTELIKYQKYGPIV
CCCEEEECCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCEE
CCENPQGNPIAAAYTLRESTYQQAFEWVKQGGYSKIAIILSRPYGNSATSKIIFHSYKKV
EECCCCCCEEEEEEEHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHH
FGTFPDSNLVYTDCYNYNDGYQSAHLIARDTPDFIFGNSDDIIAGIYQYYLDNNLELPAL
HCCCCCCCEEEEEECCCCCCCCCEEEEEECCCCEEECCCCHHHHHHHHHHHCCCCCCCCC
MGQENQISGSLLKIPTIDHHLKMIGQAACELAITGAIKSVSIESEFIIR
CCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHEECCEEEEEECCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377; 8011666; 9457849 [H]