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The map label for this gene is arcD [H]

Identifier: 116493356

GI number: 116493356

Start: 1610391

End: 1611809

Strand: Reverse

Name: arcD [H]

Synonym: PEPE_1628

Alternate gene names: 116493356

Gene position: 1611809-1610391 (Counterclockwise)

Preceding gene: 116493357

Following gene: 116493355

Centisome position: 87.96

GC content: 37.42

Gene sequence:

>1419_bases
ATGGAAAATAAAAACGGAATTGGGCGACTAGGCTTAACCGCCTTAATTGTTAGCTCTTGTATTGGAACCGGAATCTTTGG
AATTACCAATGCGGTTGCCGCTGCTGCCGCACCAGGACCAGCATTATTGTCTTGGTTGTTTGTTGGAATTGGTTTTTTGT
TCTTAGTTTTATCATTAAATAATTTATCTGAAAAACGCCCCGATTTAGAAGCAGGAATTTTTAGTTATGCGGGAGCTGGA
TTTGGTCCATTAGGTGAATTCATTTCTGGATGGGCTTACTGGCTTTCAGCTTGGCTTGGAAACATTGCTTTTGCAACCAT
GCTGATGAGCGCGATTGGAACTTTTCTACCGGCTTTCAAGGGTGGCCAAAACTTACCATCAATAATTGTAGCAATTATTT
TCTGTTGGGCTTTAACTCTACTTGTCAATCGTGGGGTAGAAAGTGCTTCGTTTGTTAACACCATTGGAACTTTCTTTAAG
ATAATTCCACTAGTTTTGTTTATTATCATTGTAATTATTTTCTTTAAAGGTCACATGTTTACAACTGATTTTTGGGGAAA
CGTTGCCAATAACTTTTCCAAAGGAACTACAACCGGATCAATTTTTGAACAATTGAAGGGAACATTATCAACTTTAATTT
GGGTATTCATTGGTGTTGAAGGTGCTTCAGTTATGGGCCATCGTGCTAAAACTAGAAGTCAAGCTCAGCAAGCCACGATT
ATCGGCTTTGTTTTACTTCTGATAATTTATGTCATGATTTCAATTATCCCTTACGGAACACTAACACGTGCCCAGTTGGC
GGGTGCTGAACAACCAGCTTTAGGAAATGATTTACAATTAATTGTTGGTAGTTGGGGCGCAATGATTATTAATATAGGTT
TGATCATTTCTACGGTTATCTCATGGTTATCGTGGACGATGTTACCAGCTGAAACTACAATGTTAATTGCTAAAGATAAG
GTTATGCCAAAAGTTTGGGGTAAATTAAATGAAAGAAAAGCTCCAACAACGTCACTAATGATTACAGCGGTTCTACAAAC
TATTTTCTTATTCTCATTGCTATTCACCTCCGAAGCTTATAATTTTGCTTATTCATTAGCTTCAGCAGCTATTCTATTCT
CCTACCTATTTGTGGGATTGTATCAAATGAAATACAGCTACAAGGAAAAGCAATGGGGACAGTGGACAATTGGCTTAATT
GCAGCTTTATTCCAGTTTGCCTGCATGGTGCTATCTGGTTGGCAACAAATTTTGTTAGTCTCTATCAGTTTCATCCCAGG
ATTCATTATCTATTATCAAGCAACGAAAGAAAATAAACGTACTTTAACTGGTAAAGAGAAAGGTATGATGGGGATGATTT
TGATTCTCAGTTTGATTGCCATTTATTTGGTAGTTAATGGAACAATTGTTGTGAGCTAA

Upstream 100 bases:

>100_bases
TCTAAAAATAATTTTATGGCAGAAGTGAACTGTGGTACTAGAAAATAGTAGACAGTTTACTTTTGCCATTTTTATTAAAT
TTAAGAATGGAGTGAAGAAC

Downstream 100 bases:

>100_bases
TTAAGCAGGTTAAAAGTATAATTTGCCTAAGAAATTAAGACGAAATATGATTTTTTTGATTATATAGGGTATTGGACACT
AATTTAAGTTACGAAGAATT

Product: amino acid transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 472; Mature: 472

Protein sequence:

>472_residues
MENKNGIGRLGLTALIVSSCIGTGIFGITNAVAAAAAPGPALLSWLFVGIGFLFLVLSLNNLSEKRPDLEAGIFSYAGAG
FGPLGEFISGWAYWLSAWLGNIAFATMLMSAIGTFLPAFKGGQNLPSIIVAIIFCWALTLLVNRGVESASFVNTIGTFFK
IIPLVLFIIIVIIFFKGHMFTTDFWGNVANNFSKGTTTGSIFEQLKGTLSTLIWVFIGVEGASVMGHRAKTRSQAQQATI
IGFVLLLIIYVMISIIPYGTLTRAQLAGAEQPALGNDLQLIVGSWGAMIINIGLIISTVISWLSWTMLPAETTMLIAKDK
VMPKVWGKLNERKAPTTSLMITAVLQTIFLFSLLFTSEAYNFAYSLASAAILFSYLFVGLYQMKYSYKEKQWGQWTIGLI
AALFQFACMVLSGWQQILLVSISFIPGFIIYYQATKENKRTLTGKEKGMMGMILILSLIAIYLVVNGTIVVS

Sequences:

>Translated_472_residues
MENKNGIGRLGLTALIVSSCIGTGIFGITNAVAAAAAPGPALLSWLFVGIGFLFLVLSLNNLSEKRPDLEAGIFSYAGAG
FGPLGEFISGWAYWLSAWLGNIAFATMLMSAIGTFLPAFKGGQNLPSIIVAIIFCWALTLLVNRGVESASFVNTIGTFFK
IIPLVLFIIIVIIFFKGHMFTTDFWGNVANNFSKGTTTGSIFEQLKGTLSTLIWVFIGVEGASVMGHRAKTRSQAQQATI
IGFVLLLIIYVMISIIPYGTLTRAQLAGAEQPALGNDLQLIVGSWGAMIINIGLIISTVISWLSWTMLPAETTMLIAKDK
VMPKVWGKLNERKAPTTSLMITAVLQTIFLFSLLFTSEAYNFAYSLASAAILFSYLFVGLYQMKYSYKEKQWGQWTIGLI
AALFQFACMVLSGWQQILLVSISFIPGFIIYYQATKENKRTLTGKEKGMMGMILILSLIAIYLVVNGTIVVS
>Mature_472_residues
MENKNGIGRLGLTALIVSSCIGTGIFGITNAVAAAAAPGPALLSWLFVGIGFLFLVLSLNNLSEKRPDLEAGIFSYAGAG
FGPLGEFISGWAYWLSAWLGNIAFATMLMSAIGTFLPAFKGGQNLPSIIVAIIFCWALTLLVNRGVESASFVNTIGTFFK
IIPLVLFIIIVIIFFKGHMFTTDFWGNVANNFSKGTTTGSIFEQLKGTLSTLIWVFIGVEGASVMGHRAKTRSQAQQATI
IGFVLLLIIYVMISIIPYGTLTRAQLAGAEQPALGNDLQLIVGSWGAMIINIGLIISTVISWLSWTMLPAETTMLIAKDK
VMPKVWGKLNERKAPTTSLMITAVLQTIFLFSLLFTSEAYNFAYSLASAAILFSYLFVGLYQMKYSYKEKQWGQWTIGLI
AALFQFACMVLSGWQQILLVSISFIPGFIIYYQATKENKRTLTGKEKGMMGMILILSLIAIYLVVNGTIVVS

Specific function: Catalyzes an electroneutral exchange between arginine and ornithine to allow high-efficiency energy conversion in the arginine deiminase pathway [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the amino acid-polyamine-organocation (APC) superfamily [H]

Homologues:

Organism=Escherichia coli, GI1787890, Length=472, Percent_Identity=32.8389830508475, Blast_Score=256, Evalue=2e-69,
Organism=Escherichia coli, GI2367353, Length=374, Percent_Identity=25.4010695187166, Blast_Score=108, Evalue=8e-25,
Organism=Escherichia coli, GI1790575, Length=291, Percent_Identity=26.1168384879725, Blast_Score=85, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004841
- InterPro:   IPR002293
- InterPro:   IPR004754
- InterPro:   IPR022461 [H]

Pfam domain/function: PF00324 AA_permease [H]

EC number: NA

Molecular weight: Translated: 51346; Mature: 51346

Theoretical pI: Translated: 9.80; Mature: 9.80

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEC
>Mature Secondary Structure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HHHHHCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9696763 [H]