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The map label for this gene is arcD [H]

Identifier: 116493355

GI number: 116493355

Start: 1608804

End: 1610225

Strand: Reverse

Name: arcD [H]

Synonym: PEPE_1627

Alternate gene names: 116493355

Gene position: 1610225-1608804 (Counterclockwise)

Preceding gene: 116493356

Following gene: 116493354

Centisome position: 87.88

GC content: 36.01

Gene sequence:

>1422_bases
ATGACAGAGAAAAATGGGAAAATAGGCTTATTAACTTTGAGTGCCCTAGTGATTAGTTCATCTATTGGTAGTGGTGTTTT
TGGAATTATGTCAGATCTTGCGAGGGCTGCAGCGCCGGGACCGGTTTTAATTACGTGGTTTATTGTTGGTTTGGGTGTTA
TGATGCTGGCTTTATCGTTAAATAACTTATTATTAAAAGAACCAGAGCTAGAGGGAATATTTTCTTATCCCAAGAAAGGA
TTTGGCCCTTTCATGGGTTTTATTAGTGGTTGGGGATATTGGTTGTCGGCATGGTTGGGTAGTGTGGCATTTGCAACCTT
CCTGATGAGCACAATAGGTTATTTTTTTCCAATTCTTAGGTCAGAACGAAACTTACCATTAATTCTAATTGCAAGTATCT
TTTCATGGGGACTGACATATCTAGTTAACCGCGGCATCGAAGGTGCTGCCATAATTAATACAATTGTAACCGTATGCAAA
TTGATTCCTTTATTTGTATTTATTGTATTTGGAATTATTCTTTTTAAAGGCGGAATGTTTACGCATGCCTTTTGGAATAA
TATGAATAATAATTTTGTTGGTGGAGATGTTATAGGTCAAGTTAAGAACTGCATGATGGTAATGATGTGGGTTTTTGTTG
GAATTGAAGGTGCCTCAATACTATCAGCACGAGCTGAAAAGAAATCGGATGCGGGAAAAGCAACCATTTTGGGTTTGATT
AGCTTATTAGTTATCTACATTTTGGCATCAGTTTTACCATATGGATATTTAACCCAAGAACAGTTGGCAACGATTAAACA
ACCAGCCATGCTATATATATTTGAAAAGATGGTTGGTACTTGGGGTGGATACTTCATTGGAATTGGATTAATTGTATCAA
TCCTAGGTGCATGGCTTTCTTGGACGATGTTACCAGCCGAGACAATGTTATTGATGGCAAAGCAAAAACTATTACCAGAA
TATTTTGGGAAAATTAATGATAAAAAAGCTCCCACCTTTGCCTTAATTTTAACGGCTGGATTAATACAGATTTTCTTATT
CACCCTATTTTTTACAACTAAAGCATACAATTTTGCTTATTCTCTTTGTACCGCAGCGGTGATTGTGTGTTATATCCTAG
TTGCGGCTTACCAGATTAAATATTCGTGGACACATATCCATGAAAAAGGAAATCATCAACAATTGGTAATTGGTGTCCTA
GCCTTGTTGTTTGAAGTAATAGGCATTTTAATGGCAGGGTTAAGTCATTTATTGCTATGTTTTATTGCATACATCCCTGG
AATTTATTTTTATGGTCAGGCTCGTAAAAATAATGGACACGAATATTTCCTCTCTAAGGGAGAATTGATAGTAACAGTAT
TTATAACAATTGGTGCTCTAATTGGAATGGGGTTAGTGATAATGGGAAAAATTATAGTTTGA

Upstream 100 bases:

>100_bases
AGGGTATTGGACACTAATTTAAGTTACGAAGAATTTAGATAAATATTCTGAAGCATCACGTATATCAAATAACTAATTAA
AATTTTTGGGAGTAATTTGA

Downstream 100 bases:

>100_bases
ATTGTAGAAAAATAAAGGTACAACGATTAAAGAAATTCAAGATATGGAAGCATTAGCCAGCGAACTAAAACATTAACCAC
TTCGAGTGTGCAATCAAAGC

Product: amino acid transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 473; Mature: 472

Protein sequence:

>473_residues
MTEKNGKIGLLTLSALVISSSIGSGVFGIMSDLARAAAPGPVLITWFIVGLGVMMLALSLNNLLLKEPELEGIFSYPKKG
FGPFMGFISGWGYWLSAWLGSVAFATFLMSTIGYFFPILRSERNLPLILIASIFSWGLTYLVNRGIEGAAIINTIVTVCK
LIPLFVFIVFGIILFKGGMFTHAFWNNMNNNFVGGDVIGQVKNCMMVMMWVFVGIEGASILSARAEKKSDAGKATILGLI
SLLVIYILASVLPYGYLTQEQLATIKQPAMLYIFEKMVGTWGGYFIGIGLIVSILGAWLSWTMLPAETMLLMAKQKLLPE
YFGKINDKKAPTFALILTAGLIQIFLFTLFFTTKAYNFAYSLCTAAVIVCYILVAAYQIKYSWTHIHEKGNHQQLVIGVL
ALLFEVIGILMAGLSHLLLCFIAYIPGIYFYGQARKNNGHEYFLSKGELIVTVFITIGALIGMGLVIMGKIIV

Sequences:

>Translated_473_residues
MTEKNGKIGLLTLSALVISSSIGSGVFGIMSDLARAAAPGPVLITWFIVGLGVMMLALSLNNLLLKEPELEGIFSYPKKG
FGPFMGFISGWGYWLSAWLGSVAFATFLMSTIGYFFPILRSERNLPLILIASIFSWGLTYLVNRGIEGAAIINTIVTVCK
LIPLFVFIVFGIILFKGGMFTHAFWNNMNNNFVGGDVIGQVKNCMMVMMWVFVGIEGASILSARAEKKSDAGKATILGLI
SLLVIYILASVLPYGYLTQEQLATIKQPAMLYIFEKMVGTWGGYFIGIGLIVSILGAWLSWTMLPAETMLLMAKQKLLPE
YFGKINDKKAPTFALILTAGLIQIFLFTLFFTTKAYNFAYSLCTAAVIVCYILVAAYQIKYSWTHIHEKGNHQQLVIGVL
ALLFEVIGILMAGLSHLLLCFIAYIPGIYFYGQARKNNGHEYFLSKGELIVTVFITIGALIGMGLVIMGKIIV
>Mature_472_residues
TEKNGKIGLLTLSALVISSSIGSGVFGIMSDLARAAAPGPVLITWFIVGLGVMMLALSLNNLLLKEPELEGIFSYPKKGF
GPFMGFISGWGYWLSAWLGSVAFATFLMSTIGYFFPILRSERNLPLILIASIFSWGLTYLVNRGIEGAAIINTIVTVCKL
IPLFVFIVFGIILFKGGMFTHAFWNNMNNNFVGGDVIGQVKNCMMVMMWVFVGIEGASILSARAEKKSDAGKATILGLIS
LLVIYILASVLPYGYLTQEQLATIKQPAMLYIFEKMVGTWGGYFIGIGLIVSILGAWLSWTMLPAETMLLMAKQKLLPEY
FGKINDKKAPTFALILTAGLIQIFLFTLFFTTKAYNFAYSLCTAAVIVCYILVAAYQIKYSWTHIHEKGNHQQLVIGVLA
LLFEVIGILMAGLSHLLLCFIAYIPGIYFYGQARKNNGHEYFLSKGELIVTVFITIGALIGMGLVIMGKIIV

Specific function: Catalyzes an electroneutral exchange between arginine and ornithine to allow high-efficiency energy conversion in the arginine deiminase pathway [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the amino acid-polyamine-organocation (APC) superfamily [H]

Homologues:

Organism=Escherichia coli, GI1787890, Length=451, Percent_Identity=37.0288248337029, Blast_Score=287, Evalue=1e-78,
Organism=Escherichia coli, GI2367353, Length=419, Percent_Identity=24.8210023866348, Blast_Score=126, Evalue=4e-30,
Organism=Escherichia coli, GI1790575, Length=443, Percent_Identity=25.0564334085779, Blast_Score=76, Evalue=4e-15,
Organism=Escherichia coli, GI87082250, Length=381, Percent_Identity=25.1968503937008, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI1786908, Length=380, Percent_Identity=23.4210526315789, Blast_Score=66, Evalue=6e-12,
Organism=Escherichia coli, GI1786302, Length=411, Percent_Identity=21.4111922141119, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004841
- InterPro:   IPR002293
- InterPro:   IPR004754
- InterPro:   IPR022461 [H]

Pfam domain/function: PF00324 AA_permease [H]

EC number: NA

Molecular weight: Translated: 51890; Mature: 51759

Theoretical pI: Translated: 9.46; Mature: 9.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHCCCEEEECCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TEKNGKIGLLTLSALVISSSIGSGVFGIMSDLARAAAPGPVLITWFIVGLGVMMLALSL
CCCCCCEEHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
NNLLLKEPELEGIFSYPKKGFGPFMGFISGWGYWLSAWLGSVAFATFLMSTIGYFFPILR
HHHHHCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SERNLPLILIASIFSWGLTYLVNRGIEGAAIINTIVTVCKLIPLFVFIVFGIILFKGGMF
CCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
THAFWNNMNNNFVGGDVIGQVKNCMMVMMWVFVGIEGASILSARAEKKSDAGKATILGLI
HHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHH
SLLVIYILASVLPYGYLTQEQLATIKQPAMLYIFEKMVGTWGGYFIGIGLIVSILGAWLS
HHHHHHHHHHHHCCCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WTMLPAETMLLMAKQKLLPEYFGKINDKKAPTFALILTAGLIQIFLFTLFFTTKAYNFAY
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SLCTAAVIVCYILVAAYQIKYSWTHIHEKGNHQQLVIGVLALLFEVIGILMAGLSHLLLC
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FIAYIPGIYFYGQARKNNGHEYFLSKGELIVTVFITIGALIGMGLVIMGKIIV
HHHHHCCCEEEECCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9696763 [H]