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The map label for this gene is xylR [H]

Identifier: 116493327

GI number: 116493327

Start: 1568625

End: 1569779

Strand: Direct

Name: xylR [H]

Synonym: PEPE_1599

Alternate gene names: 116493327

Gene position: 1568625-1569779 (Clockwise)

Preceding gene: 116493324

Following gene: 116493336

Centisome position: 85.61

GC content: 31.26

Gene sequence:

>1155_bases
ATGCAATTAACAGCTATGATAAAAGTAATGGATCTCTTATATCAAGAGTACTTAATCCCAATGGTAATTTTTGATGAAGA
GGATACCCCACTCTATCCAAAAATGAATATTTCCACATCACTATTCAATAATCAAACAGACTCTAAAGTAACTTTGTTTA
AGAAATCTGATTATTTATTTGCTACTTTCAATATCAAAAATATAAATGGTCCAACTTATCATTTTTTACTTGGTCCCTGT
GGAATTACAGGTACAACTGCGACTACTTATAAAATGCGTAAGGAGATTTTCTATTCCAATATTCACTATGCCAAAGAGAC
TTTGGGCAATTTTATTTCTTTCTTGGAATTAATTTATCCGATCATGACCGGCGATATTCTATTACAATCAGATATAACAT
GGCATGATGCTTCTGTACCTAACGATCCAATTTCCGATACAACATCATTTGTTCAGAATCTGTATGAACGACGTGTTAAA
GGTACTACATTAGATGCCTATCAAATGGAACTTCATTACATTGAATGTATTAAAAAGAAGCAACCCGAAAAAATCAAATA
TCTGTTAAAAAAATTAGCTGAGAACCGTGAAGAAAACTTATCTACTAACGAAATAGAAAGTCTAAAATTAAAGTTTGCCG
CATTAACAGCTATACTTACTAGAATCAGTATTGAACAAGGCGTGCCTATTAACCAAGCCTTTAGTCTTTCAGATACTTTG
ATACAAGGGCTTGCTTCCGTTCATTCATTCGAAGCTTGGATAGAACATGTACAAATTGCCACAAATAGTTTCATCGGAAT
TCAAGAGGAAGCTACCAAAATTAGCCAATCACCTTTAATTAAAAAAATCATTAATCATATTGATGACCATTTATATGAAA
AAGTCACATTAGACACCCTAGCTTCTGTTACTAACAAGAATAAAGCCTATCTTTCTACACAATTCAAAAAAGAAACTGGT
TTAACAATTCATCAATATATACAAACTAAAAAAATTGAGGAAGCTAAGCATCTCTTATTGTTTACAGAACAACAACTTTT
TGAAATTAGTGCACTATTATCCTTTGCCAGTCAAAGTCATTTTATTAAAGTATTTAAACAAATCACTGGAACTACTCCTA
AAGAATATAGAAGTAAGCATTTCAATACGATTTAA

Upstream 100 bases:

>100_bases
CATAAATTAACCCATATTATATAATTAAGACAAAATCTTCCTAAATTCAATTAACGTATAATTAGTTTAGCTATAATAAT
TGGAAAGGATACACTTCACT

Downstream 100 bases:

>100_bases
TTTTTATTCATTGTTCAAGAAAAGCGCTTCGTAATTTTTTACGAAGCGCTTTTCTATTTCAGATGCAAACATCTCTAACT
GAATATCATTTTATTTAAAA

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 384; Mature: 384

Protein sequence:

>384_residues
MQLTAMIKVMDLLYQEYLIPMVIFDEEDTPLYPKMNISTSLFNNQTDSKVTLFKKSDYLFATFNIKNINGPTYHFLLGPC
GITGTTATTYKMRKEIFYSNIHYAKETLGNFISFLELIYPIMTGDILLQSDITWHDASVPNDPISDTTSFVQNLYERRVK
GTTLDAYQMELHYIECIKKKQPEKIKYLLKKLAENREENLSTNEIESLKLKFAALTAILTRISIEQGVPINQAFSLSDTL
IQGLASVHSFEAWIEHVQIATNSFIGIQEEATKISQSPLIKKIINHIDDHLYEKVTLDTLASVTNKNKAYLSTQFKKETG
LTIHQYIQTKKIEEAKHLLLFTEQQLFEISALLSFASQSHFIKVFKQITGTTPKEYRSKHFNTI

Sequences:

>Translated_384_residues
MQLTAMIKVMDLLYQEYLIPMVIFDEEDTPLYPKMNISTSLFNNQTDSKVTLFKKSDYLFATFNIKNINGPTYHFLLGPC
GITGTTATTYKMRKEIFYSNIHYAKETLGNFISFLELIYPIMTGDILLQSDITWHDASVPNDPISDTTSFVQNLYERRVK
GTTLDAYQMELHYIECIKKKQPEKIKYLLKKLAENREENLSTNEIESLKLKFAALTAILTRISIEQGVPINQAFSLSDTL
IQGLASVHSFEAWIEHVQIATNSFIGIQEEATKISQSPLIKKIINHIDDHLYEKVTLDTLASVTNKNKAYLSTQFKKETG
LTIHQYIQTKKIEEAKHLLLFTEQQLFEISALLSFASQSHFIKVFKQITGTTPKEYRSKHFNTI
>Mature_384_residues
MQLTAMIKVMDLLYQEYLIPMVIFDEEDTPLYPKMNISTSLFNNQTDSKVTLFKKSDYLFATFNIKNINGPTYHFLLGPC
GITGTTATTYKMRKEIFYSNIHYAKETLGNFISFLELIYPIMTGDILLQSDITWHDASVPNDPISDTTSFVQNLYERRVK
GTTLDAYQMELHYIECIKKKQPEKIKYLLKKLAENREENLSTNEIESLKLKFAALTAILTRISIEQGVPINQAFSLSDTL
IQGLASVHSFEAWIEHVQIATNSFIGIQEEATKISQSPLIKKIINHIDDHLYEKVTLDTLASVTNKNKAYLSTQFKKETG
LTIHQYIQTKKIEEAKHLLLFTEQQLFEISALLSFASQSHFIKVFKQITGTTPKEYRSKHFNTI

Specific function: Regulatory protein for the xylBAFGHR operon [H]

COG id: COG4753

COG function: function code T; Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789993, Length=100, Percent_Identity=34, Blast_Score=69, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 44114; Mature: 44114

Theoretical pI: Translated: 7.17; Mature: 7.17

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLTAMIKVMDLLYQEYLIPMVIFDEEDTPLYPKMNISTSLFNNQTDSKVTLFKKSDYLF
CCHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCCHHHHCCCCCCEEEEEEECCEEE
ATFNIKNINGPTYHFLLGPCGITGTTATTYKMRKEIFYSNIHYAKETLGNFISFLELIYP
EEEEEECCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IMTGDILLQSDITWHDASVPNDPISDTTSFVQNLYERRVKGTTLDAYQMELHYIECIKKK
HHCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC
QPEKIKYLLKKLAENREENLSTNEIESLKLKFAALTAILTRISIEQGVPINQAFSLSDTL
CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
IQGLASVHSFEAWIEHVQIATNSFIGIQEEATKISQSPLIKKIINHIDDHLYEKVTLDTL
HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
ASVTNKNKAYLSTQFKKETGLTIHQYIQTKKIEEAKHLLLFTEQQLFEISALLSFASQSH
HHHHCCCCCEEEHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FIKVFKQITGTTPKEYRSKHFNTI
HHHHHHHHHCCCHHHHHHHCCCCC
>Mature Secondary Structure
MQLTAMIKVMDLLYQEYLIPMVIFDEEDTPLYPKMNISTSLFNNQTDSKVTLFKKSDYLF
CCHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCCHHHHCCCCCCEEEEEEECCEEE
ATFNIKNINGPTYHFLLGPCGITGTTATTYKMRKEIFYSNIHYAKETLGNFISFLELIYP
EEEEEECCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IMTGDILLQSDITWHDASVPNDPISDTTSFVQNLYERRVKGTTLDAYQMELHYIECIKKK
HHCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC
QPEKIKYLLKKLAENREENLSTNEIESLKLKFAALTAILTRISIEQGVPINQAFSLSDTL
CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
IQGLASVHSFEAWIEHVQIATNSFIGIQEEATKISQSPLIKKIINHIDDHLYEKVTLDTL
HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
ASVTNKNKAYLSTQFKKETGLTIHQYIQTKKIEEAKHLLLFTEQQLFEISALLSFASQSH
HHHHCCCCCEEEHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FIKVFKQITGTTPKEYRSKHFNTI
HHHHHHHHHCCCHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]