Click here to switch to the map view.

The map label for this gene is yabR [H]

Identifier: 116493276

GI number: 116493276

Start: 1516103

End: 1516609

Strand: Reverse

Name: yabR [H]

Synonym: PEPE_1548

Alternate gene names: 116493276

Gene position: 1516609-1516103 (Counterclockwise)

Preceding gene: 116493277

Following gene: 116493275

Centisome position: 82.77

GC content: 40.63

Gene sequence:

>507_bases
ATGACAATCGAAGTTGGAACTAAGGTAGACGGAAAAGTTTCAGGAATTACAAATTTCGGAGCTTTTATTGATTTGGGGGA
GAATCGTTCGGGCTTAGTCCATATTAGTGAAGTTTCTGACGGTTTTATTAAGGATATTCATGATGTACTTAATGTTGGAG
ACACCGTGAAGGTTAAGGTTTTATCGATTGCGGACGATGGAAAGATTGCTCTTTCAATTAGAAAGGCAGTTGATCATCCC
GTACAAAAAGAAACTGCTAAAGTTGCTTCAACTTCCCACCATTCCAATGGAAATTTCCATGGCCGTCCAGCAGGAAACAT
GGATAGAAAGTATTCACATAATCAACACAGTCATCGCGATAATCATCGTGAACAACGCAGCTCAAATGTGGAACCAGATT
TTGATCAAATGCTCTCTGGATTTTTAAAGGATAGTGAGTCACGCTTATCAACGTTAAAACGTAATACGGATGGTAAACGT
GGTGGCCGTGGCGGACGCCGTAGTTAA

Upstream 100 bases:

>100_bases
GTTAATTAATGGACTGAATTTGCGTGAACAAAACTCGCAAGGAGTCGGTGTGGAATGGTATAATTAAGCATTAAATTTTT
TAGGAGGATCATAGGTATTT

Downstream 100 bases:

>100_bases
CTATGAAAATCGGTGAGCTAGGTGATCAGATTGTTGAACAATATGGACTGAGCCAATTCAAAATCGTAGTGGCAGTTTCA
ACGGGAGTCGATTCAACGGT

Product: RNA-binding protein

Products: RNAn; a nucleoside diphosphate [C]

Alternate protein names: NA

Number of amino acids: Translated: 168; Mature: 167

Protein sequence:

>168_residues
MTIEVGTKVDGKVSGITNFGAFIDLGENRSGLVHISEVSDGFIKDIHDVLNVGDTVKVKVLSIADDGKIALSIRKAVDHP
VQKETAKVASTSHHSNGNFHGRPAGNMDRKYSHNQHSHRDNHREQRSSNVEPDFDQMLSGFLKDSESRLSTLKRNTDGKR
GGRGGRRS

Sequences:

>Translated_168_residues
MTIEVGTKVDGKVSGITNFGAFIDLGENRSGLVHISEVSDGFIKDIHDVLNVGDTVKVKVLSIADDGKIALSIRKAVDHP
VQKETAKVASTSHHSNGNFHGRPAGNMDRKYSHNQHSHRDNHREQRSSNVEPDFDQMLSGFLKDSESRLSTLKRNTDGKR
GGRGGRRS
>Mature_167_residues
TIEVGTKVDGKVSGITNFGAFIDLGENRSGLVHISEVSDGFIKDIHDVLNVGDTVKVKVLSIADDGKIALSIRKAVDHPV
QKETAKVASTSHHSNGNFHGRPAGNMDRKYSHNQHSHRDNHREQRSSNVEPDFDQMLSGFLKDSESRLSTLKRNTDGKRG
GRGGRRS

Specific function: Involved In Mrna Degradation. Hydrolyzes Single-Stranded Polyribonucleotides Processively In The 3' To 5' Direction. Involved In The RNA Degradosome, A Multi-Enzyme Complex Important In RNA Processing And Messenger RNA Degradation. [C]

COG id: COG1098

COG function: function code J; Predicted RNA binding protein (contains ribosomal protein S1 domain)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

Organism=Escherichia coli, GI145693187, Length=77, Percent_Identity=44.1558441558442, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI87082262, Length=73, Percent_Identity=46.5753424657534, Blast_Score=70, Evalue=1e-13,

Paralogues:

None

Copy number: 200 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1000 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). 3328 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 3,000 Molecules/Cell In: Glucose minimal media

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR022967 [H]

Pfam domain/function: PF00575 S1 [H]

EC number: 2.7.7.8 [C]

Molecular weight: Translated: 18427; Mature: 18295

Theoretical pI: Translated: 10.16; Mature: 10.16

Prosite motif: PS50126 S1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIEVGTKVDGKVSGITNFGAFIDLGENRSGLVHISEVSDGFIKDIHDVLNVGDTVKVKV
CEEECCCCCCCEECCEECCCCEEECCCCCCCEEEEECCCCHHHHHHHHHHCCCCEEEEEE
LSIADDGKIALSIRKAVDHPVQKETAKVASTSHHSNGNFHGRPAGNMDRKYSHNQHSHRD
EEECCCCEEEEEEHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
NHREQRSSNVEPDFDQMLSGFLKDSESRLSTLKRNTDGKRGGRGGRRS
HHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure 
TIEVGTKVDGKVSGITNFGAFIDLGENRSGLVHISEVSDGFIKDIHDVLNVGDTVKVKV
EEECCCCCCCEECCEECCCCEEECCCCCCCEEEEECCCCHHHHHHHHHHCCCCEEEEEE
LSIADDGKIALSIRKAVDHPVQKETAKVASTSHHSNGNFHGRPAGNMDRKYSHNQHSHRD
EEECCCCEEEEEEHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
NHREQRSSNVEPDFDQMLSGFLKDSESRLSTLKRNTDGKRGGRGGRRS
HHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): 4500 [C]

Specific activity: NA

Km value (mM): NA

Substrates: RNAn+1; phosphate [C]

Specific reaction: RNAn+1 + phosphate = RNAn + a nucleoside diphosphate [C]

General reaction: Nucleotidyl group transfer [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8113187; 7584024; 9384377 [H]