| Definition | Pediococcus pentosaceus ATCC 25745, complete genome. |
|---|---|
| Accession | NC_008525 |
| Length | 1,832,387 |
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The map label for this gene is hsdR [H]
Identifier: 116493124
GI number: 116493124
Start: 1368746
End: 1371598
Strand: Direct
Name: hsdR [H]
Synonym: PEPE_1379
Alternate gene names: 116493124
Gene position: 1368746-1371598 (Clockwise)
Preceding gene: 116493122
Following gene: 116493125
Centisome position: 74.7
GC content: 34.88
Gene sequence:
>2853_bases ATGAATTTAAATACCAATTTTTCAAATTCAATTTTGTCAGCATTATTAGATAAAAATATCGCTACTAAAACTGAATTCAC GCCACAACTAATTGCTAATGCTCCGCACGAAAAATTAAAGCATCACCTAGAGCAAGAATTGCGAACCTGTACGAGTTTTA CTTTTGCTGTAGCATTTATTTCTAATGCAGTATTAACCGATTTAAAGGTAACCTTTGCTGATTTAGCCCGTCATCACGTT TCTGGAAGAATTATAACTTCAACTTATTTAAATTTTAATCAACCTAAAATTTTTGCGGAACTCCTAAAAATTCCCAATGT CGAAGTACGGATCGCCGACGCTGATAGTGACTTTCATGCCAAAGGATACATTTTTAATAAGTCTGACTATCAAACATTTT TAATCGGTAGCTCAAATTTGACCAGTAATGCCCTAATTCAAAACTATGAATGGAATCTCAAATTATCTTCAAAAACTGAA GGACGTTTAGCTGAACAAATCAATCAAGAAGTTGAGAAACAATGGCAAAAAGCCCAACCATTAAATCAAAAATGGATTGA TCAGTATGCCAAATTTTATTCAGAAAATGTGTCTCTATCCAGCCCCACTACTCCATTCCAATTGGAAAATAAATCACCTT TAACGCCTAACCGAATGCAACAAGCAGCACTTAAAGCTTTGATTAATTTACGTTCAGAAGGTCAGAAGCGCGGATTAATT ATCTCTGCTACCGGTACTGGCAAAACATACTTAGCAGCCTTTGATGTGCGTAATTATCGGCCTCGTAAATTTTTATTCGT GGTTCATCGGGAACAAATTCTCCGCAAAGCTTTACTTAGTTTTAAAAATGTCCTAGGCGGACCAGCGGACGACTACGGTA TCCTCGCTGGTGGAACTAAAGAAATTGACCGAAAATACGTTTTTGCTACGATTCAAACCCTTTCTAGACCAGACATTTTA AATGAACTTAAGGCTAATACTTTTGACTATATTTTAATTGATGAAGCTCACAAAGCTGGTGCAGCTTCCTACCAGAAAAT AATCAATCACTTCAAGCCTGAATTTCTATTAGGGATGACTGCCACACCTGAGCGAACAGATGATTTTAATATATACGAAC TTTTTGATTATCACATTGCTTATGAAATCCGGCTTCAGGATGCCATTGAAGAAAAAATGTTGAGTGAATTTCATTACATT GGAATTACTGACTATGAGTATGAGGGACAAGTCATCACAGATAATACGCCTCTGAAACACTTAGTTTCTAGGGAGCGCAT GGATTATGTAGAACAACAAATTGATTACTACGGACATGATGGCGATCAGGTTTATGGTCTAATTTTTTGTAGTAGAACTG AAGAAGCCCACGAAGTAGCCCAAATTATGACGCAAAAAGGTCATCCAACCGTTGCACTAACTGGTGAGGACTCTGTGGAT AATCGTGAAGCAACTATCAAAAAGTTTGAGAACGGCGAAATAGAATACCTTGTTACTGTTGATATTTTTAATGAAGGTAT TGATATACCTAAAATTAATCAAGTTATTATGCTTAGGAATACAGAATCTAGCATTATCTTTATTCAGCAACTAGGTCGTG GCTTGCGTAAAAGTGAAGGTAAGGACTTTGTCACCATTATTGACTTCATTGGAAATTACCAGAATAATTATATGATTCCT ATTGCCCTTACTGGTGATCAAACGTTAAACAAAAATAGCCTTCGTAACAAAATATCTATTAATCAAACGGTCGGACTTTC TTCTATTAATTTTAGTGAAATTGCGCGAGAACAAATCTATAATTCCATCAATAATAGTAATTTGACCCTCCTCACGAAGT TACGTGCTTCATACATCGACTTGAAAAACAAACTTGGTCGAGTTCCTTTACTGGTTGATTTTCAAAAGTACGGCTCTACC AATGCTCAAATTTTTGTGGATAAATATGAGAATTATCATCAATTTTTGTTTAAAATGCATGACCAGCAGGCGTTAACTAC GCTCGAGGATAGCTTTCTGCGCTTAATTTCGCGAGAATTTTTAAACGGCATGCGTGTTCATGAATTAATTTTATTACAGG ATTTATTTACTAATAATGGTAAATATTCCAAAAATGATTTAATCACCGAACTAAGTCAAATGGGTACTTATACTGATGTG GCAACTATTACCTCATTGGAAAAACATCTAGACTTAACTTATTATCAGCCTAATGACAGCAAAAAATATGGCAATACTGC CATGATAAATTTGGTTGAAAATACTTACCATTTGAATGAATCGATTTGGAATTCATATCAAAATAACTCCTACTTTAAAA AACTAGTCGACGACGTAATTACAACTGGATTAATTAATAGTAAGAACTATGATTTGAATACCAAATTTACACTCTATCAA AAATACACACGTCGCCAAGTCAACAGCTTGTTAGGCTGGCCTACAGACCAATCTTCCGCAATTTACGGTTATAAAGAAAA AATGGGATTTTGTCCTATGTTTGTTACTTACCAGAAACGAGCGGACATCCCTGATGAGTTAAACCATAACAACGTTTTCT ATAATTCTTCTTTACTAAGTTGGTATACTAAAAGCCCTCGTCGTCTTGACTCTAATGAAGTAGTTCGTCTACTAGAAGGT AACCAAAATAACACGATTGATTTACTACTTTTTGTTAAAAAAAGTGACGATGAAGGCTCTGATTTTTATTATTTAGGACA AGTTGATTTCGATTCAGATTCAGTAGAACAACGATATCGCACCGTTAAAGGTAAAGAAAAACCCATTGTTAAAGCTAATT TGAAGCTCCGAACTGCAGTCAAATATGATTTATACTTAGATTTAATCGATTAA
Upstream 100 bases:
>100_bases AGTATCTTTTTTTAACAGTTTCCCTACTTTGGTATGCTTTTAAAGAATTATTGTTATAATTGTAAAAAACAGAACAAACG TTCCAATTAGGAGTTTATCT
Downstream 100 bases:
>100_bases CGTTTTGGAGTACAATGTTAGTAGCGTTAATTAAATCTTTTGGAGGAAATCAGTTTGAAAAATGCACATAATAAAATTAC TTTAACGTTACTTTTAGGGC
Product: superfamily II DNA/RNA helicase
Products: NA
Alternate protein names: R.EcoAI [H]
Number of amino acids: Translated: 950; Mature: 950
Protein sequence:
>950_residues MNLNTNFSNSILSALLDKNIATKTEFTPQLIANAPHEKLKHHLEQELRTCTSFTFAVAFISNAVLTDLKVTFADLARHHV SGRIITSTYLNFNQPKIFAELLKIPNVEVRIADADSDFHAKGYIFNKSDYQTFLIGSSNLTSNALIQNYEWNLKLSSKTE GRLAEQINQEVEKQWQKAQPLNQKWIDQYAKFYSENVSLSSPTTPFQLENKSPLTPNRMQQAALKALINLRSEGQKRGLI ISATGTGKTYLAAFDVRNYRPRKFLFVVHREQILRKALLSFKNVLGGPADDYGILAGGTKEIDRKYVFATIQTLSRPDIL NELKANTFDYILIDEAHKAGAASYQKIINHFKPEFLLGMTATPERTDDFNIYELFDYHIAYEIRLQDAIEEKMLSEFHYI GITDYEYEGQVITDNTPLKHLVSRERMDYVEQQIDYYGHDGDQVYGLIFCSRTEEAHEVAQIMTQKGHPTVALTGEDSVD NREATIKKFENGEIEYLVTVDIFNEGIDIPKINQVIMLRNTESSIIFIQQLGRGLRKSEGKDFVTIIDFIGNYQNNYMIP IALTGDQTLNKNSLRNKISINQTVGLSSINFSEIAREQIYNSINNSNLTLLTKLRASYIDLKNKLGRVPLLVDFQKYGST NAQIFVDKYENYHQFLFKMHDQQALTTLEDSFLRLISREFLNGMRVHELILLQDLFTNNGKYSKNDLITELSQMGTYTDV ATITSLEKHLDLTYYQPNDSKKYGNTAMINLVENTYHLNESIWNSYQNNSYFKKLVDDVITTGLINSKNYDLNTKFTLYQ KYTRRQVNSLLGWPTDQSSAIYGYKEKMGFCPMFVTYQKRADIPDELNHNNVFYNSSLLSWYTKSPRRLDSNEVVRLLEG NQNNTIDLLLFVKKSDDEGSDFYYLGQVDFDSDSVEQRYRTVKGKEKPIVKANLKLRTAVKYDLYLDLID
Sequences:
>Translated_950_residues MNLNTNFSNSILSALLDKNIATKTEFTPQLIANAPHEKLKHHLEQELRTCTSFTFAVAFISNAVLTDLKVTFADLARHHV SGRIITSTYLNFNQPKIFAELLKIPNVEVRIADADSDFHAKGYIFNKSDYQTFLIGSSNLTSNALIQNYEWNLKLSSKTE GRLAEQINQEVEKQWQKAQPLNQKWIDQYAKFYSENVSLSSPTTPFQLENKSPLTPNRMQQAALKALINLRSEGQKRGLI ISATGTGKTYLAAFDVRNYRPRKFLFVVHREQILRKALLSFKNVLGGPADDYGILAGGTKEIDRKYVFATIQTLSRPDIL NELKANTFDYILIDEAHKAGAASYQKIINHFKPEFLLGMTATPERTDDFNIYELFDYHIAYEIRLQDAIEEKMLSEFHYI GITDYEYEGQVITDNTPLKHLVSRERMDYVEQQIDYYGHDGDQVYGLIFCSRTEEAHEVAQIMTQKGHPTVALTGEDSVD NREATIKKFENGEIEYLVTVDIFNEGIDIPKINQVIMLRNTESSIIFIQQLGRGLRKSEGKDFVTIIDFIGNYQNNYMIP IALTGDQTLNKNSLRNKISINQTVGLSSINFSEIAREQIYNSINNSNLTLLTKLRASYIDLKNKLGRVPLLVDFQKYGST NAQIFVDKYENYHQFLFKMHDQQALTTLEDSFLRLISREFLNGMRVHELILLQDLFTNNGKYSKNDLITELSQMGTYTDV ATITSLEKHLDLTYYQPNDSKKYGNTAMINLVENTYHLNESIWNSYQNNSYFKKLVDDVITTGLINSKNYDLNTKFTLYQ KYTRRQVNSLLGWPTDQSSAIYGYKEKMGFCPMFVTYQKRADIPDELNHNNVFYNSSLLSWYTKSPRRLDSNEVVRLLEG NQNNTIDLLLFVKKSDDEGSDFYYLGQVDFDSDSVEQRYRTVKGKEKPIVKANLKLRTAVKYDLYLDLID >Mature_950_residues MNLNTNFSNSILSALLDKNIATKTEFTPQLIANAPHEKLKHHLEQELRTCTSFTFAVAFISNAVLTDLKVTFADLARHHV SGRIITSTYLNFNQPKIFAELLKIPNVEVRIADADSDFHAKGYIFNKSDYQTFLIGSSNLTSNALIQNYEWNLKLSSKTE GRLAEQINQEVEKQWQKAQPLNQKWIDQYAKFYSENVSLSSPTTPFQLENKSPLTPNRMQQAALKALINLRSEGQKRGLI ISATGTGKTYLAAFDVRNYRPRKFLFVVHREQILRKALLSFKNVLGGPADDYGILAGGTKEIDRKYVFATIQTLSRPDIL NELKANTFDYILIDEAHKAGAASYQKIINHFKPEFLLGMTATPERTDDFNIYELFDYHIAYEIRLQDAIEEKMLSEFHYI GITDYEYEGQVITDNTPLKHLVSRERMDYVEQQIDYYGHDGDQVYGLIFCSRTEEAHEVAQIMTQKGHPTVALTGEDSVD NREATIKKFENGEIEYLVTVDIFNEGIDIPKINQVIMLRNTESSIIFIQQLGRGLRKSEGKDFVTIIDFIGNYQNNYMIP IALTGDQTLNKNSLRNKISINQTVGLSSINFSEIAREQIYNSINNSNLTLLTKLRASYIDLKNKLGRVPLLVDFQKYGST NAQIFVDKYENYHQFLFKMHDQQALTTLEDSFLRLISREFLNGMRVHELILLQDLFTNNGKYSKNDLITELSQMGTYTDV ATITSLEKHLDLTYYQPNDSKKYGNTAMINLVENTYHLNESIWNSYQNNSYFKKLVDDVITTGLINSKNYDLNTKFTLYQ KYTRRQVNSLLGWPTDQSSAIYGYKEKMGFCPMFVTYQKRADIPDELNHNNVFYNSSLLSWYTKSPRRLDSNEVVRLLEG NQNNTIDLLLFVKKSDDEGSDFYYLGQVDFDSDSVEQRYRTVKGKEKPIVKANLKLRTAVKYDLYLDLID
Specific function: The EcoAI enzyme recognizes 5'-GAGN(7)GTCA-3'. Subunit R is required for both nuclease and ATPase activities, but not for modification [H]
COG id: COG1061
COG function: function code KL; DNA or RNA helicases of superfamily II
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
Organism=Escherichia coli, GI1788511, Length=369, Percent_Identity=27.10027100271, Blast_Score=102, Evalue=8e-23, Organism=Saccharomyces cerevisiae, GI6320539, Length=357, Percent_Identity=29.9719887955182, Blast_Score=127, Evalue=7e-30,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014001 - InterPro: IPR001650 - InterPro: IPR014021 - InterPro: IPR006935 - InterPro: IPR013670 - InterPro: IPR007409 [H]
Pfam domain/function: PF08463 EcoEI_R_C; PF04313 HSDR_N; PF04851 ResIII [H]
EC number: =3.1.21.3 [H]
Molecular weight: Translated: 109335; Mature: 109335
Theoretical pI: Translated: 6.56; Mature: 6.56
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNLNTNFSNSILSALLDKNIATKTEFTPQLIANAPHEKLKHHLEQELRTCTSFTFAVAFI CCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH SNAVLTDLKVTFADLARHHVSGRIITSTYLNFNQPKIFAELLKIPNVEVRIADADSDFHA HHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCHHHHHHHHHCCCCEEEEEECCCCCCC KGYIFNKSDYQTFLIGSSNLTSNALIQNYEWNLKLSSKTEGRLAEQINQEVEKQWQKAQP CEEEEECCCCEEEEEECCCCCCCCEEECEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCC LNQKWIDQYAKFYSENVSLSSPTTPFQLENKSPLTPNRMQQAALKALINLRSEGQKRGLI CCHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEE ISATGTGKTYLAAFDVRNYRPRKFLFVVHREQILRKALLSFKNVLGGPADDYGILAGGTK EEECCCCCEEEEEEECCCCCCCEEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCH EIDRKYVFATIQTLSRPDILNELKANTFDYILIDEAHKAGAASYQKIINHFKPEFLLGMT HHHHHHHHHHHHHCCCCHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCEEEECC ATPERTDDFNIYELFDYHIAYEIRLQDAIEEKMLSEFHYIGITDYEYEGQVITDNTPLKH CCCCCCCCCCCEEEEEEEEEEEEEEHHHHHHHHHHHHEEEECCCEEECCEEEECCCCHHH LVSRERMDYVEQQIDYYGHDGDQVYGLIFCSRTEEAHEVAQIMTQKGHPTVALTGEDSVD HHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCHHHHHHHHHHHCCCCCEEEECCCCCCC NREATIKKFENGEIEYLVTVDIFNEGIDIPKINQVIMLRNTESSIIFIQQLGRGLRKSEG CCHHHHHHCCCCCEEEEEEEEEECCCCCCCCCCCEEEEECCCCCEEEHHHHCCHHHHCCC KDFVTIIDFIGNYQNNYMIPIALTGDQTLNKNSLRNKISINQTVGLSSINFSEIAREQIY CCCEEHHHHHCCCCCCEEEEEEECCCCCCCHHHHHCEEEECCCCCCCCCCHHHHHHHHHH NSINNSNLTLLTKLRASYIDLKNKLGRVPLLVDFQKYGSTNAQIFVDKYENYHQFLFKMH HHCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEEHHHHCCCCCEEEEECHHHHHHHHHHHH DQQALTTLEDSFLRLISREFLNGMRVHELILLQDLFTNNGKYSKNDLITELSQMGTYTDV HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHH ATITSLEKHLDLTYYQPNDSKKYGNTAMINLVENTYHLNESIWNSYQNNSYFKKLVDDVI HHHHHHHHHCCEEEECCCCCCCCCCEEEEEEEHHHHHCCHHHHHHCCCCHHHHHHHHHHH TTGLINSKNYDLNTKFTLYQKYTRRQVNSLLGWPTDQSSAIYGYKEKMGFCPMFVTYQKR HHCCCCCCCCCCCCEEHHHHHHHHHHHHHHHCCCCCCCCEEECHHHHCCCCCEEEEECCC ADIPDELNHNNVFYNSSLLSWYTKSPRRLDSNEVVRLLEGNQNNTIDLLLFVKKSDDEGS CCCCCCCCCCCEEECCHHHHHHCCCCCCCCHHHHEEEEECCCCCEEEEEEEEEECCCCCC DFYYLGQVDFDSDSVEQRYRTVKGKEKPIVKANLKLRTAVKYDLYLDLID CEEEEEEEECCCHHHHHHHHHHCCCCCCEEEECCEEEEEEEEEEEEEECC >Mature Secondary Structure MNLNTNFSNSILSALLDKNIATKTEFTPQLIANAPHEKLKHHLEQELRTCTSFTFAVAFI CCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH SNAVLTDLKVTFADLARHHVSGRIITSTYLNFNQPKIFAELLKIPNVEVRIADADSDFHA HHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCHHHHHHHHHCCCCEEEEEECCCCCCC KGYIFNKSDYQTFLIGSSNLTSNALIQNYEWNLKLSSKTEGRLAEQINQEVEKQWQKAQP CEEEEECCCCEEEEEECCCCCCCCEEECEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCC LNQKWIDQYAKFYSENVSLSSPTTPFQLENKSPLTPNRMQQAALKALINLRSEGQKRGLI CCHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEE ISATGTGKTYLAAFDVRNYRPRKFLFVVHREQILRKALLSFKNVLGGPADDYGILAGGTK EEECCCCCEEEEEEECCCCCCCEEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCH EIDRKYVFATIQTLSRPDILNELKANTFDYILIDEAHKAGAASYQKIINHFKPEFLLGMT HHHHHHHHHHHHHCCCCHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCEEEECC ATPERTDDFNIYELFDYHIAYEIRLQDAIEEKMLSEFHYIGITDYEYEGQVITDNTPLKH CCCCCCCCCCCEEEEEEEEEEEEEEHHHHHHHHHHHHEEEECCCEEECCEEEECCCCHHH LVSRERMDYVEQQIDYYGHDGDQVYGLIFCSRTEEAHEVAQIMTQKGHPTVALTGEDSVD HHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCHHHHHHHHHHHCCCCCEEEECCCCCCC NREATIKKFENGEIEYLVTVDIFNEGIDIPKINQVIMLRNTESSIIFIQQLGRGLRKSEG CCHHHHHHCCCCCEEEEEEEEEECCCCCCCCCCCEEEEECCCCCEEEHHHHCCHHHHCCC KDFVTIIDFIGNYQNNYMIPIALTGDQTLNKNSLRNKISINQTVGLSSINFSEIAREQIY CCCEEHHHHHCCCCCCEEEEEEECCCCCCCHHHHHCEEEECCCCCCCCCCHHHHHHHHHH NSINNSNLTLLTKLRASYIDLKNKLGRVPLLVDFQKYGSTNAQIFVDKYENYHQFLFKMH HHCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEEHHHHCCCCCEEEEECHHHHHHHHHHHH DQQALTTLEDSFLRLISREFLNGMRVHELILLQDLFTNNGKYSKNDLITELSQMGTYTDV HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHH ATITSLEKHLDLTYYQPNDSKKYGNTAMINLVENTYHLNESIWNSYQNNSYFKKLVDDVI HHHHHHHHHCCEEEECCCCCCCCCCEEEEEEEHHHHHCCHHHHHHCCCCHHHHHHHHHHH TTGLINSKNYDLNTKFTLYQKYTRRQVNSLLGWPTDQSSAIYGYKEKMGFCPMFVTYQKR HHCCCCCCCCCCCCEEHHHHHHHHHHHHHHHCCCCCCCCEEECHHHHCCCCCEEEEECCC ADIPDELNHNNVFYNSSLLSWYTKSPRRLDSNEVVRLLEGNQNNTIDLLLFVKKSDDEGS CCCCCCCCCCCEEECCHHHHHHCCCCCCCCHHHHEEEEECCCCCEEEEEEEEEECCCCCC DFYYLGQVDFDSDSVEQRYRTVKGKEKPIVKANLKLRTAVKYDLYLDLID CEEEEEEEECCCHHHHHHHHHHCCCCCCEEEECCEEEEEEEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8412658 [H]