| Definition | Pediococcus pentosaceus ATCC 25745, complete genome. |
|---|---|
| Accession | NC_008525 |
| Length | 1,832,387 |
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The map label for this gene is 116493097
Identifier: 116493097
GI number: 116493097
Start: 1337389
End: 1338258
Strand: Reverse
Name: 116493097
Synonym: PEPE_1351
Alternate gene names: NA
Gene position: 1338258-1337389 (Counterclockwise)
Preceding gene: 116493099
Following gene: 116493096
Centisome position: 73.03
GC content: 37.01
Gene sequence:
>870_bases ATGAGTATTTTAATCGCGTTAGTTCCCGCAATCATGTGGGGAAGTATTGGATTAGTTAGCGGTCGATTAGGTGGAAGCGC TTCTCAACAAACGCTTGGAATGACAATGGGTGCGGTTGTCTTTTCTTTAATCACTTTAGTTCTTTACCATCCTACTTTGA ATGGTAAAATTTGGATTGCTGGTTTGATTTCAGGTTTATTTTGGGCTGTCGGTCAATTTAATCAATTTAGTTCGATGAAA CATATTGGTGTTTCAAAGACGGTGCCAATTTCAACTGGATTACAATTGGCTGGTAACGCCTTAGCCGGGGTATTAATCTG GCATGAGTGGACTTCTGGTAATATGATTATGGTTGGTACAATTGCTGTCATTGCTTTGATTATTGGTGCAGCATTAACTT CACTTAAAGATAAAAGTGACACAACTGCAGATCGAAATGACGAAAATATGCCAGCTGGAATTCGCGCTTTGGTTGTTTCA ACTATTGGTTATATCGGATATACAGTAATTGTTCGTTTTGCTAATGTTGACGCCAAAGCCATTATCTTCCCTCAAGCAAT TGGGATGTTAATTGGTGCTTTAATTTTTGTTCTAATCGCTAAAGAACAAAAGGAAATTACTAAGAAACCAACTTTTATGA ATATTATTACTGGTTTGATTTGGGGAACAGGTAACATCTTTATGTTCCTTGCAATTCCATCAGTTGGATTGGCAATTAGT TATTCACTTGCTCAAGCTGGGATTGTTATTTCAACCTTTGGTTCAATTTGGTTACTTGGTGAACACAAGACGCGTCGTGA AATGCAATTTATCATCATCGGTTCAATTTTAATCATTGTTGGTGAAACTTTACTAGCAACGCTAAAATAA
Upstream 100 bases:
>100_bases ATAAAAGTTGGAATTCGCTTTCATAACTGGTAAAATGATATTTTGTCTTAGAGAGAGAGACATATATTTTTAGATATATA TATATAGGAGAGAATTGAAT
Downstream 100 bases:
>100_bases TTTTAAATAAAAGCAATACTATAGTAGGAAAAATCGTTTTCGAGGTTGTTAGGTGACCTGGGGAGCGATTTTTTTCGTAT TTATTAGAACCGATGGAGTC
Product: putative glucose uptake permease
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 289; Mature: 288
Protein sequence:
>289_residues MSILIALVPAIMWGSIGLVSGRLGGSASQQTLGMTMGAVVFSLITLVLYHPTLNGKIWIAGLISGLFWAVGQFNQFSSMK HIGVSKTVPISTGLQLAGNALAGVLIWHEWTSGNMIMVGTIAVIALIIGAALTSLKDKSDTTADRNDENMPAGIRALVVS TIGYIGYTVIVRFANVDAKAIIFPQAIGMLIGALIFVLIAKEQKEITKKPTFMNIITGLIWGTGNIFMFLAIPSVGLAIS YSLAQAGIVISTFGSIWLLGEHKTRREMQFIIIGSILIIVGETLLATLK
Sequences:
>Translated_289_residues MSILIALVPAIMWGSIGLVSGRLGGSASQQTLGMTMGAVVFSLITLVLYHPTLNGKIWIAGLISGLFWAVGQFNQFSSMK HIGVSKTVPISTGLQLAGNALAGVLIWHEWTSGNMIMVGTIAVIALIIGAALTSLKDKSDTTADRNDENMPAGIRALVVS TIGYIGYTVIVRFANVDAKAIIFPQAIGMLIGALIFVLIAKEQKEITKKPTFMNIITGLIWGTGNIFMFLAIPSVGLAIS YSLAQAGIVISTFGSIWLLGEHKTRREMQFIIIGSILIIVGETLLATLK >Mature_288_residues SILIALVPAIMWGSIGLVSGRLGGSASQQTLGMTMGAVVFSLITLVLYHPTLNGKIWIAGLISGLFWAVGQFNQFSSMKH IGVSKTVPISTGLQLAGNALAGVLIWHEWTSGNMIMVGTIAVIALIIGAALTSLKDKSDTTADRNDENMPAGIRALVVST IGYIGYTVIVRFANVDAKAIIFPQAIGMLIGALIFVLIAKEQKEITKKPTFMNIITGLIWGTGNIFMFLAIPSVGLAISY SLAQAGIVISTFGSIWLLGEHKTRREMQFIIIGSILIIVGETLLATLK
Specific function: Unknown
COG id: COG4975
COG function: function code G; Putative glucose uptake permease
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the GRP transporter (TC 2.A.7.5) family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010651 [H]
Pfam domain/function: PF06800 Sugar_transport [H]
EC number: NA
Molecular weight: Translated: 30731; Mature: 30600
Theoretical pI: Translated: 10.25; Mature: 10.25
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 4.2 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSILIALVPAIMWGSIGLVSGRLGGSASQQTLGMTMGAVVFSLITLVLYHPTLNGKIWIA CHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHH GLISGLFWAVGQFNQFSSMKHIGVSKTVPISTGLQLAGNALAGVLIWHEWTSGNMIMVGT HHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCHHHHCCHHEEEEEEEEECCCCEEEHHH IAVIALIIGAALTSLKDKSDTTADRNDENMPAGIRALVVSTIGYIGYTVIVRFANVDAKA HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHEEECCCCEE IIFPQAIGMLIGALIFVLIAKEQKEITKKPTFMNIITGLIWGTGNIFMFLAIPSVGLAIS EEHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEEEEEECCCCHHEE YSLAQAGIVISTFGSIWLLGEHKTRREMQFIIIGSILIIVGETLLATLK HHHHHCCEEEEECCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure SILIALVPAIMWGSIGLVSGRLGGSASQQTLGMTMGAVVFSLITLVLYHPTLNGKIWIA HHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHH GLISGLFWAVGQFNQFSSMKHIGVSKTVPISTGLQLAGNALAGVLIWHEWTSGNMIMVGT HHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCHHHHCCHHEEEEEEEEECCCCEEEHHH IAVIALIIGAALTSLKDKSDTTADRNDENMPAGIRALVVSTIGYIGYTVIVRFANVDAKA HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHEEECCCCEE IIFPQAIGMLIGALIFVLIAKEQKEITKKPTFMNIITGLIWGTGNIFMFLAIPSVGLAIS EEHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEEEEEECCCCHHEE YSLAQAGIVISTFGSIWLLGEHKTRREMQFIIIGSILIIVGETLLATLK HHHHHCCEEEEECCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 12566566 [H]