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The map label for this gene is ytsP [H]

Identifier: 116493044

GI number: 116493044

Start: 1289340

End: 1289825

Strand: Direct

Name: ytsP [H]

Synonym: PEPE_1296

Alternate gene names: 116493044

Gene position: 1289340-1289825 (Clockwise)

Preceding gene: 116493003

Following gene: 116493045

Centisome position: 70.36

GC content: 36.83

Gene sequence:

>486_bases
ATGTCAGAACCGATTAACTCAATTATTGTCGAACAGATTGATGCACTTTTGTTTAATGAAACCAACTTAATTGCCAATCT
TTCAAATGCTTCAGCTTTGTTGTATAGCGAAACCAAAGATGTAAACTGGTGTGGTTTTTATCTTTTTGATTCAAAAAAAG
ATGAATTGGTCCTGGGACCCTTCCAAGGAAATGTGGCTTGTATGCACATCAAAAACGGTTCGGGAGTTTGTGGAACTGCC
TTTAAAGAAAATAAAGTCCTCCGTGTGGAAAATGTGCATGAATTTCCTGGACACATTGCTTGTGATAGTGCATCAAACTC
AGAAATTGTCTTACCTTTAATGGTGGGTAACCAATTATTAGGTGTTTTAGACATTGACTCACCGATTCTCAATCGTTTTA
GTGAAGATGATGAAGCCACTCTGATTAAATTCAGAGACGCATTAGTTAAACACATTGACAGTTCTGTTTTGAGTGCGTTA
AACTAG

Upstream 100 bases:

>100_bases
TTCTTCAATTTAGAATTTACCTAATTAATTATATCATACCCATTAGTTTGTTAAACTAGGGATTTTTTATTAATTAAACA
TTATATAGGAAGTGACTACA

Downstream 100 bases:

>100_bases
TAGGAGTGTAAAATAATGCAGCGGTGGGCGGTAAGCTCGTCAACAGATTGTTGCCTGTTTTTCAGGTCAACTAGTAACCT
CAGCGGCTGCAAAGGTGAAC

Product: GAF domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 161; Mature: 160

Protein sequence:

>161_residues
MSEPINSIIVEQIDALLFNETNLIANLSNASALLYSETKDVNWCGFYLFDSKKDELVLGPFQGNVACMHIKNGSGVCGTA
FKENKVLRVENVHEFPGHIACDSASNSEIVLPLMVGNQLLGVLDIDSPILNRFSEDDEATLIKFRDALVKHIDSSVLSAL
N

Sequences:

>Translated_161_residues
MSEPINSIIVEQIDALLFNETNLIANLSNASALLYSETKDVNWCGFYLFDSKKDELVLGPFQGNVACMHIKNGSGVCGTA
FKENKVLRVENVHEFPGHIACDSASNSEIVLPLMVGNQLLGVLDIDSPILNRFSEDDEATLIKFRDALVKHIDSSVLSAL
N
>Mature_160_residues
SEPINSIIVEQIDALLFNETNLIANLSNASALLYSETKDVNWCGFYLFDSKKDELVLGPFQGNVACMHIKNGSGVCGTAF
KENKVLRVENVHEFPGHIACDSASNSEIVLPLMVGNQLLGVLDIDSPILNRFSEDDEATLIKFRDALVKHIDSSVLSALN

Specific function: Unknown

COG id: COG1956

COG function: function code T; GAF domain-containing protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the free Met sulfoxide reductase family [H]

Homologues:

Organism=Escherichia coli, GI171474009, Length=128, Percent_Identity=59.375, Blast_Score=164, Evalue=2e-42,
Organism=Saccharomyces cerevisiae, GI6322781, Length=159, Percent_Identity=40.8805031446541, Blast_Score=111, Evalue=6e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003018
- InterPro:   IPR000614 [H]

Pfam domain/function: PF01590 GAF [H]

EC number: NA

Molecular weight: Translated: 17626; Mature: 17495

Theoretical pI: Translated: 4.35; Mature: 4.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEPINSIIVEQIDALLFNETNLIANLSNASALLYSETKDVNWCGFYLFDSKKDELVLGP
CCCCHHHHHHHHHHHHHCCCCCCEEECCCCEEEEEECCCCCCEEEEEEEECCCCCEEEEC
FQGNVACMHIKNGSGVCGTAFKENKVLRVENVHEFPGHIACDSASNSEIVLPLMVGNQLL
CCCCEEEEEEECCCCCEECCCCCCCEEEECCCCCCCCEEEECCCCCCEEEEEEEECCCEE
GVLDIDSPILNRFSEDDEATLIKFRDALVKHIDSSVLSALN
EEEECCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SEPINSIIVEQIDALLFNETNLIANLSNASALLYSETKDVNWCGFYLFDSKKDELVLGP
CCCHHHHHHHHHHHHHCCCCCCEEECCCCEEEEEECCCCCCEEEEEEEECCCCCEEEEC
FQGNVACMHIKNGSGVCGTAFKENKVLRVENVHEFPGHIACDSASNSEIVLPLMVGNQLL
CCCCEEEEEEECCCCCEECCCCCCCEEEECCCCCCCCEEEECCCCCCEEEEEEEECCCEE
GVLDIDSPILNRFSEDDEATLIKFRDALVKHIDSSVLSALN
EEEECCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]