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The map label for this gene is yebC [C]

Identifier: 116492988

GI number: 116492988

Start: 1226725

End: 1227462

Strand: Reverse

Name: yebC [C]

Synonym: PEPE_1240

Alternate gene names: 116492988

Gene position: 1227462-1226725 (Counterclockwise)

Preceding gene: 116492989

Following gene: 116492987

Centisome position: 66.99

GC content: 40.38

Gene sequence:

>738_bases
ATGTCAGGACATTCAAAGTGGCATAATATTCAAGGTCGTAAAAACGCCCAAGATGCAAAGCGTGGTAAAATTTTCCAACG
AATCTCTCGTGAGATTTATGTTGCAGTTAAAGCTGGGGGTCCGGACCCTTCTTCTAACCCTCAATTACGTTTAATGATGG
ATAAGGCACGCGCAGCCAACATGCCAAAAGACAACATCAAACGTGCCGTTGATAAGGGTAGTGGCGCAGGTGGTGCTAAC
TACGAAGAAATTACTTATGAAGGATATGGACCAGCTGGTACAGCTATTATCGTGTCAGCTCTTACAGATAACAAGAATCG
TACTGCAGCTGCTGTTCGTTCAGCATTCACTCACCATGGTGGTTCACTAGGGGCTTCAGGTTCAGTTTCTTACATGTTTG
ATCGTAAGGGTTACATTGTTATTAGTCGTGAAGACCTTGATAAAAATGAAGATGATATGATGGAAGATGCAATTGATGCA
GGTGCAGACGATGTACAAACATCAGAAGAGGTATTTGAAATCTATACTGATCCTAAGGAATTTGCTGCTGTTCGTGATGC
TCTTGAAGCAAAGGGATACACATTGGCTAATGCTGAATTAACCATGATTCCTGAAAACGAAACAATGGTTCCAGAAGATA
AAGTTAAACAATATACAGGTTTAATTGATGAACTTGAAGATAATGATGATGTTTCAGAAGTTTATGAAGCAGCTACATTA
CCTGAAGACGCTGAATAA

Upstream 100 bases:

>100_bases
TGAGGATTGAATGTAAGCATTGACAAACCCCACTATAATACGTAATATATTAAACGTCTATGAACAGATAAAAAATTGAA
ATGAAAGAAGGAGTTCGGGT

Downstream 100 bases:

>100_bases
TAATTATTAAAGGCAAGGACAATTAAGTTCTTGCTTTTTTTATTTAATCAAGAATTTGAAAATTTAGTATGATAAAATTT
ACTTATATAACATATAACTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 245; Mature: 244

Protein sequence:

>245_residues
MSGHSKWHNIQGRKNAQDAKRGKIFQRISREIYVAVKAGGPDPSSNPQLRLMMDKARAANMPKDNIKRAVDKGSGAGGAN
YEEITYEGYGPAGTAIIVSALTDNKNRTAAAVRSAFTHHGGSLGASGSVSYMFDRKGYIVISREDLDKNEDDMMEDAIDA
GADDVQTSEEVFEIYTDPKEFAAVRDALEAKGYTLANAELTMIPENETMVPEDKVKQYTGLIDELEDNDDVSEVYEAATL
PEDAE

Sequences:

>Translated_245_residues
MSGHSKWHNIQGRKNAQDAKRGKIFQRISREIYVAVKAGGPDPSSNPQLRLMMDKARAANMPKDNIKRAVDKGSGAGGAN
YEEITYEGYGPAGTAIIVSALTDNKNRTAAAVRSAFTHHGGSLGASGSVSYMFDRKGYIVISREDLDKNEDDMMEDAIDA
GADDVQTSEEVFEIYTDPKEFAAVRDALEAKGYTLANAELTMIPENETMVPEDKVKQYTGLIDELEDNDDVSEVYEAATL
PEDAE
>Mature_244_residues
SGHSKWHNIQGRKNAQDAKRGKIFQRISREIYVAVKAGGPDPSSNPQLRLMMDKARAANMPKDNIKRAVDKGSGAGGANY
EEITYEGYGPAGTAIIVSALTDNKNRTAAAVRSAFTHHGGSLGASGSVSYMFDRKGYIVISREDLDKNEDDMMEDAIDAG
ADDVQTSEEVFEIYTDPKEFAAVRDALEAKGYTLANAELTMIPENETMVPEDKVKQYTGLIDELEDNDDVSEVYEAATLP
EDAE

Specific function: Unknown

COG id: COG0217

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the TACO1 family

Homologues:

Organism=Homo sapiens, GI27545315, Length=243, Percent_Identity=31.2757201646091, Blast_Score=137, Evalue=1e-32,
Organism=Escherichia coli, GI1788171, Length=237, Percent_Identity=50.210970464135, Blast_Score=226, Evalue=1e-60,
Organism=Escherichia coli, GI1788294, Length=231, Percent_Identity=41.1255411255411, Blast_Score=176, Evalue=2e-45,
Organism=Caenorhabditis elegans, GI17556100, Length=244, Percent_Identity=27.8688524590164, Blast_Score=94, Evalue=5e-20,
Organism=Saccharomyces cerevisiae, GI6321458, Length=265, Percent_Identity=31.3207547169811, Blast_Score=119, Evalue=5e-28,
Organism=Drosophila melanogaster, GI24583305, Length=246, Percent_Identity=26.4227642276423, Blast_Score=84, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1240_PEDPA (Q03EU1)

Other databases:

- EMBL:   CP000422
- RefSeq:   YP_804723.1
- ProteinModelPortal:   Q03EU1
- SMR:   Q03EU1
- STRING:   Q03EU1
- GeneID:   4417866
- GenomeReviews:   CP000422_GR
- KEGG:   ppe:PEPE_1240
- NMPDR:   fig|278197.10.peg.1082
- eggNOG:   COG0217
- HOGENOM:   HBG715231
- OMA:   VYANFDI
- PhylomeDB:   Q03EU1
- ProtClustDB:   PRK00110
- BioCyc:   PPEN278197:PEPE_1240-MONOMER
- HAMAP:   MF_00693
- InterPro:   IPR002876
- InterPro:   IPR017856
- Gene3D:   G3DSA:1.10.10.200
- PANTHER:   PTHR12532
- TIGRFAMs:   TIGR01033

Pfam domain/function: PF01709 DUF28; SSF75625 DUF28

EC number: NA

Molecular weight: Translated: 26736; Mature: 26605

Theoretical pI: Translated: 4.40; Mature: 4.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGHSKWHNIQGRKNAQDAKRGKIFQRISREIYVAVKAGGPDPSSNPQLRLMMDKARAAN
CCCCCCCCCCCCCCCCHHHHHHHHHHHHCCEEEEEEEECCCCCCCCCCEEEEEEHHHHCC
MPKDNIKRAVDKGSGAGGANYEEITYEGYGPAGTAIIVSALTDNKNRTAAAVRSAFTHHG
CCHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCEEEEEEHHCCCCHHHHHHHHHHHHCC
GSLGASGSVSYMFDRKGYIVISREDLDKNEDDMMEDAIDAGADDVQTSEEVFEIYTDPKE
CCCCCCCCEEEEEECCCEEEEECCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHH
FAAVRDALEAKGYTLANAELTMIPENETMVPEDKVKQYTGLIDELEDNDDVSEVYEAATL
HHHHHHHHHHCCEEEECCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCC
PEDAE
CCCCC
>Mature Secondary Structure 
SGHSKWHNIQGRKNAQDAKRGKIFQRISREIYVAVKAGGPDPSSNPQLRLMMDKARAAN
CCCCCCCCCCCCCCCHHHHHHHHHHHHCCEEEEEEEECCCCCCCCCCEEEEEEHHHHCC
MPKDNIKRAVDKGSGAGGANYEEITYEGYGPAGTAIIVSALTDNKNRTAAAVRSAFTHHG
CCHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCEEEEEEHHCCCCHHHHHHHHHHHHCC
GSLGASGSVSYMFDRKGYIVISREDLDKNEDDMMEDAIDAGADDVQTSEEVFEIYTDPKE
CCCCCCCCEEEEEECCCEEEEECCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHH
FAAVRDALEAKGYTLANAELTMIPENETMVPEDKVKQYTGLIDELEDNDDVSEVYEAATL
HHHHHHHHHHCCEEEECCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCC
PEDAE
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA