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The map label for this gene is ylbH [H]

Identifier: 116492914

GI number: 116492914

Start: 1152502

End: 1153053

Strand: Reverse

Name: ylbH [H]

Synonym: PEPE_1153

Alternate gene names: 116492914

Gene position: 1153053-1152502 (Counterclockwise)

Preceding gene: 116492915

Following gene: 116492913

Centisome position: 62.93

GC content: 34.42

Gene sequence:

>552_bases
GTGAGAGTTATTTCAGGTGATTTTGGTGGACGTCGTTTGAAACCCGTACCGGGAATGAAAACCCGTCCGACAACAGATAA
AATTAAAGAAAATATATTTAATATTATTGGGCCATATTTCGATGGAGGCTTAGTGCTAGATATGTACGCTGGAAGTGGTG
GATTATCAATTGAAGCTGTTTCGAGAGGGATGGATAGCGCTACGTTGATTGATAAACAATTTGCTGCTATTAAAACAATT
AAAGAAAATGTTGAAGTGACTAAGGCAAAGGATCGTTTTGAAGTCATTAAGGGCGATTCCAAGAAAATTATTCAAATGTT
AGCTACAAAAGGAAATAAATATTCGATGGCCTTCTTTGATCCACCTTATGCACTCCAAACAATTGAGAAAGACCTTCAAG
AATTAATTGGTTTAAATTTATTAACTTCAGACGCAATTATCATTTGTGAAGTCAGTGATGAAGTTGAATTGCCAGAGAAA
ATTGGATATTTAAATCGTGTACGTGAACAACATTATGGAATTACCAAAATTGTAATTTATAAGGGAGAATAA

Upstream 100 bases:

>100_bases
AAATTCGAGGATTTGAGATGGTGAGATCTGCGTATATCTCTCCACGATCAGATTTAAGGGTTGACTATAGTCAAGATTAT
TCAGCAGAGGAAGATGAACA

Downstream 100 bases:

>100_bases
TACGATGACAAAGGCTCTTTATGTTGGAAGTTTTGACCCAATTACTAATGGCCATCTAGATATTATTAAACGTGCTGCTA
AAATTTTTGATGAATTAACG

Product: N6-adenine-specific methylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 183; Mature: 183

Protein sequence:

>183_residues
MRVISGDFGGRRLKPVPGMKTRPTTDKIKENIFNIIGPYFDGGLVLDMYAGSGGLSIEAVSRGMDSATLIDKQFAAIKTI
KENVEVTKAKDRFEVIKGDSKKIIQMLATKGNKYSMAFFDPPYALQTIEKDLQELIGLNLLTSDAIIICEVSDEVELPEK
IGYLNRVREQHYGITKIVIYKGE

Sequences:

>Translated_183_residues
MRVISGDFGGRRLKPVPGMKTRPTTDKIKENIFNIIGPYFDGGLVLDMYAGSGGLSIEAVSRGMDSATLIDKQFAAIKTI
KENVEVTKAKDRFEVIKGDSKKIIQMLATKGNKYSMAFFDPPYALQTIEKDLQELIGLNLLTSDAIIICEVSDEVELPEK
IGYLNRVREQHYGITKIVIYKGE
>Mature_183_residues
MRVISGDFGGRRLKPVPGMKTRPTTDKIKENIFNIIGPYFDGGLVLDMYAGSGGLSIEAVSRGMDSATLIDKQFAAIKTI
KENVEVTKAKDRFEVIKGDSKKIIQMLATKGNKYSMAFFDPPYALQTIEKDLQELIGLNLLTSDAIIICEVSDEVELPEK
IGYLNRVREQHYGITKIVIYKGE

Specific function: May catalyze the S-adenosyl-L-methionine-dependent methylation of a specific base in rRNA (Potential) [H]

COG id: COG0742

COG function: function code L; N6-adenine-specific methylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. RsmD family [H]

Homologues:

Organism=Escherichia coli, GI1789875, Length=184, Percent_Identity=32.6086956521739, Blast_Score=92, Evalue=2e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004398 [H]

Pfam domain/function: PF03602 Cons_hypoth95 [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 20366; Mature: 20366

Theoretical pI: Translated: 8.39; Mature: 8.39

Prosite motif: PS00092 N6_MTASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVISGDFGGRRLKPVPGMKTRPTTDKIKENIFNIIGPYFDGGLVLDMYAGSGGLSIEAV
CEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHH
SRGMDSATLIDKQFAAIKTIKENVEVTKAKDRFEVIKGDSKKIIQMLATKGNKYSMAFFD
HCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCEEEEEEEC
PPYALQTIEKDLQELIGLNLLTSDAIIICEVSDEVELPEKIGYLNRVREQHYGITKIVIY
CCHHHHHHHHHHHHHHCCEEECCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCEEEEEEE
KGE
ECC
>Mature Secondary Structure
MRVISGDFGGRRLKPVPGMKTRPTTDKIKENIFNIIGPYFDGGLVLDMYAGSGGLSIEAV
CEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHH
SRGMDSATLIDKQFAAIKTIKENVEVTKAKDRFEVIKGDSKKIIQMLATKGNKYSMAFFD
HCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCEEEEEEEC
PPYALQTIEKDLQELIGLNLLTSDAIIICEVSDEVELPEKIGYLNRVREQHYGITKIVIY
CCHHHHHHHHHHHHHHCCEEECCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCEEEEEEE
KGE
ECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Methyltransferases Protein + DNA = Protein-DNA [C]

General reaction: Transferring one-carbon groups [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]