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The map label for this gene is rpsT

Identifier: 116492908

GI number: 116492908

Start: 1147196

End: 1147450

Strand: Direct

Name: rpsT

Synonym: PEPE_1147

Alternate gene names: 116492908

Gene position: 1147196-1147450 (Clockwise)

Preceding gene: 116492899

Following gene: 116492920

Centisome position: 62.61

GC content: 41.18

Gene sequence:

>255_bases
ATGCCAGTTATCAAATCTGCAATGAAACGCGTTCGCACAAGTGAAAAAGCTGCTGCTCGCAACCGCTCACAAATGAGTGC
AATGCGTACAAGCATCAAAGCATTCGAAATTGCTGCTACAAACAACGCTGAAAACGCTAATGAACTTTTACAAACAGCTT
ACAGTCGTATCGACCGAGCTAAGTCAAAAGGTTTAATTAAAGCTAATAACGCCGGCCGTAAGAAGTCACGTTTAGCTAAA
ATGCTTAGCAAATAA

Upstream 100 bases:

>100_bases
AATATAATGAAAATTTTCAAGTGCATTCAAGCATTGCAATAATTACGGGTCATCTGTATAATAATATTGTTGTACTAACC
ATATTCTGGAGGTGAATAAA

Downstream 100 bases:

>100_bases
AAAAACACCGGATTTCCGGTGTTTTTTATTTCCATCCATTTTTAAATTTAACTAAGAACAACTCAAAGAGTTCCTTCGGA
TCTCGTTGGGTTGTTTTTAA

Product: SSU ribosomal protein S20P

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 84; Mature: 83

Protein sequence:

>84_residues
MPVIKSAMKRVRTSEKAAARNRSQMSAMRTSIKAFEIAATNNAENANELLQTAYSRIDRAKSKGLIKANNAGRKKSRLAK
MLSK

Sequences:

>Translated_84_residues
MPVIKSAMKRVRTSEKAAARNRSQMSAMRTSIKAFEIAATNNAENANELLQTAYSRIDRAKSKGLIKANNAGRKKSRLAK
MLSK
>Mature_83_residues
PVIKSAMKRVRTSEKAAARNRSQMSAMRTSIKAFEIAATNNAENANELLQTAYSRIDRAKSKGLIKANNAGRKKSRLAKM
LSK

Specific function: Binds directly to 16S ribosomal RNA

COG id: COG0268

COG function: function code J; Ribosomal protein S20

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein S20P family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RS20_PEDPA (Q03F21)

Other databases:

- EMBL:   CP000422
- RefSeq:   YP_804643.1
- ProteinModelPortal:   Q03F21
- SMR:   Q03F21
- STRING:   Q03F21
- GeneID:   4417829
- GenomeReviews:   CP000422_GR
- KEGG:   ppe:PEPE_1147
- NMPDR:   fig|278197.10.peg.1008
- eggNOG:   COG0268
- HOGENOM:   HBG734145
- OMA:   AFEANPT
- BioCyc:   PPEN278197:PEPE_1147-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_00500
- InterPro:   IPR002583
- Gene3D:   G3DSA:1.20.58.110
- ProDom:   PD004231
- TIGRFAMs:   TIGR00029

Pfam domain/function: PF01649 Ribosomal_S20p; SSF46992 Ribosomal_S20p

EC number: NA

Molecular weight: Translated: 9282; Mature: 9151

Theoretical pI: Translated: 12.10; Mature: 12.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
6.0 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPVIKSAMKRVRTSEKAAARNRSQMSAMRTSIKAFEIAATNNAENANELLQTAYSRIDRA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
KSKGLIKANNAGRKKSRLAKMLSK
HHCCCCCCCCCCHHHHHHHHHHCC
>Mature Secondary Structure 
PVIKSAMKRVRTSEKAAARNRSQMSAMRTSIKAFEIAATNNAENANELLQTAYSRIDRA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
KSKGLIKANNAGRKKSRLAKMLSK
HHCCCCCCCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA