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The map label for this gene is yrvJ [H]

Identifier: 116492879

GI number: 116492879

Start: 1116830

End: 1117699

Strand: Direct

Name: yrvJ [H]

Synonym: PEPE_1117

Alternate gene names: 116492879

Gene position: 1116830-1117699 (Clockwise)

Preceding gene: 116492872

Following gene: 116492888

Centisome position: 60.95

GC content: 36.21

Gene sequence:

>870_bases
ATGAATAAAGAAATTATTTTTAACTTTATTAAAAGAAACCTTGTTCAAATTGGTCTATCAATTGCGTTTGGGGCTGTAGC
AATTTTTTTGATTCTACCACTTTTTAATTCTAAAACCGTATACGTAGGTTTGGATCAAGTTGCAATCCGAAGTTCTAATA
GCCGAACGTCAAAAAAAATTGGAACCCTCAATCAATATCAAACGGTAAGCGTACTTTCCAAATCTAACCACTGGTATCAT
ATTCGTTATGATGACACTAAAATGGGCTGGATTCCCGATTGGATTACCAACCGTTCTTTTCCTAAAGGTCAAAAAGAAAC
TCCTTTAGCAGAATCAATTATTGTCATTGATGCCGGACATGGTGGGGTTGATTCAGGTGCTTTAGGAATCGATCAATCCC
ATGAAGAAAAGAAATATACCCTACGTGTATCTAAGGCCATTCAAAGTAAATTAGATCACAGTGGAGCTAAAGTAATTATG
ACCCGTGATAATGATAGTTTTATCGAATTAGCTGAACGTCCCCAAATTGCTAACCGAAATCATGCGGATGCCTTTATCAG
TATCCATTTTGATTCTTCTGGTGAAAATAATGCCGGAACTGGAGACACTACCTACTATTACCACGATAACGGTTCGATTG
AGTTAGGTAAAGCCATTAATAAACAATTGATTAATGATGTTCCTCTTTACAACCGAGGCGTCAAATTCGCTAATTATCAG
GTCTTACGTGATAACAAGCGTCCGGCAATTTTAATTGAGGGTGGATACATCAACACCAACTCTGATTTCAAAAAATTGTC
TAGTGCTTCTTATCCAAAAAAGGTCGCCAAAGCTGTTCATCAAGGATTAATCAATTTTTTATCTAGATAA

Upstream 100 bases:

>100_bases
ACTAGAAAAAACCATATTAGTCAAGGCGAATTCGTCAAGTAAGTACCCTTAAAAATTTGCTATAATGGATACTAATAATA
ATAAATTAAGTGAGATTAGC

Downstream 100 bases:

>100_bases
GTCTGAATATCTTTAAAATTATTGGTTATTAATTCTGGATGGCTAGTTACATTAATAATTTGGTCAGGATCAAATAAAAT
TCCCTTTATATCAGCATTAT

Product: N-acetylmuramoyl-L-alanine amidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 289; Mature: 289

Protein sequence:

>289_residues
MNKEIIFNFIKRNLVQIGLSIAFGAVAIFLILPLFNSKTVYVGLDQVAIRSSNSRTSKKIGTLNQYQTVSVLSKSNHWYH
IRYDDTKMGWIPDWITNRSFPKGQKETPLAESIIVIDAGHGGVDSGALGIDQSHEEKKYTLRVSKAIQSKLDHSGAKVIM
TRDNDSFIELAERPQIANRNHADAFISIHFDSSGENNAGTGDTTYYYHDNGSIELGKAINKQLINDVPLYNRGVKFANYQ
VLRDNKRPAILIEGGYINTNSDFKKLSSASYPKKVAKAVHQGLINFLSR

Sequences:

>Translated_289_residues
MNKEIIFNFIKRNLVQIGLSIAFGAVAIFLILPLFNSKTVYVGLDQVAIRSSNSRTSKKIGTLNQYQTVSVLSKSNHWYH
IRYDDTKMGWIPDWITNRSFPKGQKETPLAESIIVIDAGHGGVDSGALGIDQSHEEKKYTLRVSKAIQSKLDHSGAKVIM
TRDNDSFIELAERPQIANRNHADAFISIHFDSSGENNAGTGDTTYYYHDNGSIELGKAINKQLINDVPLYNRGVKFANYQ
VLRDNKRPAILIEGGYINTNSDFKKLSSASYPKKVAKAVHQGLINFLSR
>Mature_289_residues
MNKEIIFNFIKRNLVQIGLSIAFGAVAIFLILPLFNSKTVYVGLDQVAIRSSNSRTSKKIGTLNQYQTVSVLSKSNHWYH
IRYDDTKMGWIPDWITNRSFPKGQKETPLAESIIVIDAGHGGVDSGALGIDQSHEEKKYTLRVSKAIQSKLDHSGAKVIM
TRDNDSFIELAERPQIANRNHADAFISIHFDSSGENNAGTGDTTYYYHDNGSIELGKAINKQLINDVPLYNRGVKFANYQ
VLRDNKRPAILIEGGYINTNSDFKKLSSASYPKKVAKAVHQGLINFLSR

Specific function: Probably involved in cell-wall metabolism [H]

COG id: COG0860

COG function: function code M; N-acetylmuramoyl-L-alanine amidase

Gene ontology:

Cell location: Secreted, cell wall [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the N-acetylmuramoyl-L-alanine amidase 3 family [H]

Homologues:

Organism=Escherichia coli, GI1788776, Length=235, Percent_Identity=26.3829787234043, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1790611, Length=226, Percent_Identity=26.9911504424779, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI87082163, Length=232, Percent_Identity=27.5862068965517, Blast_Score=77, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002508
- InterPro:   IPR017293
- InterPro:   IPR003646
- InterPro:   IPR013247 [H]

Pfam domain/function: PF01520 Amidase_3; PF08239 SH3_3 [H]

EC number: =3.5.1.28 [H]

Molecular weight: Translated: 32294; Mature: 32294

Theoretical pI: Translated: 9.96; Mature: 9.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKEIIFNFIKRNLVQIGLSIAFGAVAIFLILPLFNSKTVYVGLDQVAIRSSNSRTSKKI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEECCCCCHHHHH
GTLNQYQTVSVLSKSNHWYHIRYDDTKMGWIPDWITNRSFPKGQKETPLAESIIVIDAGH
CCCCCCEEEEEEECCCCEEEEEECCCCCCCCCHHHCCCCCCCCCCCCCCCCEEEEEECCC
GGVDSGALGIDQSHEEKKYTLRVSKAIQSKLDHSGAKVIMTRDNDSFIELAERPQIANRN
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHCCCCCCCCC
HADAFISIHFDSSGENNAGTGDTTYYYHDNGSIELGKAINKQLINDVPLYNRGVKFANYQ
CCCEEEEEEECCCCCCCCCCCCCEEEEECCCCEEEHHHHHHHHHHCCCCCCCCCEEEEEE
VLRDNKRPAILIEGGYINTNSDFKKLSSASYPKKVAKAVHQGLINFLSR
EEECCCCCEEEEECCEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNKEIIFNFIKRNLVQIGLSIAFGAVAIFLILPLFNSKTVYVGLDQVAIRSSNSRTSKKI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEECCCCCHHHHH
GTLNQYQTVSVLSKSNHWYHIRYDDTKMGWIPDWITNRSFPKGQKETPLAESIIVIDAGH
CCCCCCEEEEEEECCCCEEEEEECCCCCCCCCHHHCCCCCCCCCCCCCCCCEEEEEECCC
GGVDSGALGIDQSHEEKKYTLRVSKAIQSKLDHSGAKVIMTRDNDSFIELAERPQIANRN
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHCCCCCCCCC
HADAFISIHFDSSGENNAGTGDTTYYYHDNGSIELGKAINKQLINDVPLYNRGVKFANYQ
CCCEEEEEEECCCCCCCCCCCCCEEEEECCCCEEEHHHHHHHHHHCCCCCCCCCEEEEEE
VLRDNKRPAILIEGGYINTNSDFKKLSSASYPKKVAKAVHQGLINFLSR
EEECCCCCEEEEECCEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]