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The map label for this gene is yabB [H]

Identifier: 116492640

GI number: 116492640

Start: 874055

End: 874810

Strand: Direct

Name: yabB [H]

Synonym: PEPE_0874

Alternate gene names: 116492640

Gene position: 874055-874810 (Clockwise)

Preceding gene: 116492638

Following gene: 116492641

Centisome position: 47.7

GC content: 36.11

Gene sequence:

>756_bases
ATGCAAGTTGAGTTAAAAAGTGACGAGCGAATTGATCAATTATATCGCGATGATATTCAGATTATTCAAAGTCCATCAGT
ATTTTCATTCTCACTTGATGCGGTATTATTAGCCAATTTTGCTGAGGTTAAAAAGGCTAGTAAGACTAAAATTGTCGATC
TTTGCTCTGGAAATGGAGCAGTGGGTTTATTTCTTTCAAAAAAGACTGCCGGCCATGTGACAATGGTTGAGATTCAGTCA
CGATTAGCAGAGATGGCAATGCGGAGTATTCAGTTGAACGATTTAACTGACCGTTATGATGTTTACAACATGCCGTTGAA
AGATGCGTTAACGAAAATTAATGCTGATTCCATAGATAACATTGTTTGTAATCCACCCTACTTTGAAGATTTACCTAGTA
GCAAGAAAAATCCCAATGAACATTTGGCACTTGCTCGGCATGAATTAACGACTTCATTAGAGGAAGTTCTTCAGGTGAGT
CAAAAGATGTTAAAAATGAACGGAAAATTATTTTTGGTACATAGACCGGATCGACTACCTGAAATTTTAACCAAATTAGT
TAAAAATCGATTGGCACCTAAACGAATTCAATTTGCACATTCTCACGCAGGAGACGAAGCTAATATGGTTTTAATCGAAG
CGATTAAAGACGGTAAGCCTAATGGAACTAGAATCTTACCACCAATAGTTATTTATGAGGGGTTGGAATACTCTAAAGCA
ATTAAGGAGTTATTATATGGAAATTCCACTGATTAA

Upstream 100 bases:

>100_bases
AAGTGTTTAATAAATGAATAAAACATAAGATAACCTGTACTTTCATATATTTATTAATTTGATTATATTATGAAGTATTG
GTAAAGAAAAGGAGTTTTAA

Downstream 100 bases:

>100_bases
CGGATTTTATTTTTATGTTTTACGCTGTGCGGATAACACTTTATATGGTGGCTATACCATAAATCTTATTAACCGCGTTG
AACGCCATAATAAGGGACAA

Product: O-methyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 251; Mature: 251

Protein sequence:

>251_residues
MQVELKSDERIDQLYRDDIQIIQSPSVFSFSLDAVLLANFAEVKKASKTKIVDLCSGNGAVGLFLSKKTAGHVTMVEIQS
RLAEMAMRSIQLNDLTDRYDVYNMPLKDALTKINADSIDNIVCNPPYFEDLPSSKKNPNEHLALARHELTTSLEEVLQVS
QKMLKMNGKLFLVHRPDRLPEILTKLVKNRLAPKRIQFAHSHAGDEANMVLIEAIKDGKPNGTRILPPIVIYEGLEYSKA
IKELLYGNSTD

Sequences:

>Translated_251_residues
MQVELKSDERIDQLYRDDIQIIQSPSVFSFSLDAVLLANFAEVKKASKTKIVDLCSGNGAVGLFLSKKTAGHVTMVEIQS
RLAEMAMRSIQLNDLTDRYDVYNMPLKDALTKINADSIDNIVCNPPYFEDLPSSKKNPNEHLALARHELTTSLEEVLQVS
QKMLKMNGKLFLVHRPDRLPEILTKLVKNRLAPKRIQFAHSHAGDEANMVLIEAIKDGKPNGTRILPPIVIYEGLEYSKA
IKELLYGNSTD
>Mature_251_residues
MQVELKSDERIDQLYRDDIQIIQSPSVFSFSLDAVLLANFAEVKKASKTKIVDLCSGNGAVGLFLSKKTAGHVTMVEIQS
RLAEMAMRSIQLNDLTDRYDVYNMPLKDALTKINADSIDNIVCNPPYFEDLPSSKKNPNEHLALARHELTTSLEEVLQVS
QKMLKMNGKLFLVHRPDRLPEILTKLVKNRLAPKRIQFAHSHAGDEANMVLIEAIKDGKPNGTRILPPIVIYEGLEYSKA
IKELLYGNSTD

Specific function: Unknown

COG id: COG4123

COG function: function code R; Predicted O-methyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007848 [H]

Pfam domain/function: PF05175 MTS [H]

EC number: NA

Molecular weight: Translated: 28177; Mature: 28177

Theoretical pI: Translated: 7.15; Mature: 7.15

Prosite motif: PS00092 N6_MTASE ; PS00697 DNA_LIGASE_A1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQVELKSDERIDQLYRDDIQIIQSPSVFSFSLDAVLLANFAEVKKASKTKIVDLCSGNGA
CEECCCCHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHCCCEEEEEECCCCE
VGLFLSKKTAGHVTMVEIQSRLAEMAMRSIQLNDLTDRYDVYNMPLKDALTKINADSIDN
EEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCHHHHHHHCCCCCCCC
IVCNPPYFEDLPSSKKNPNEHLALARHELTTSLEEVLQVSQKMLKMNGKLFLVHRPDRLP
EEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHH
EILTKLVKNRLAPKRIQFAHSHAGDEANMVLIEAIKDGKPNGTRILPPIVIYEGLEYSKA
HHHHHHHHHCCCHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCEECCHHEEECCCCHHHH
IKELLYGNSTD
HHHHHCCCCCC
>Mature Secondary Structure
MQVELKSDERIDQLYRDDIQIIQSPSVFSFSLDAVLLANFAEVKKASKTKIVDLCSGNGA
CEECCCCHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHCCCEEEEEECCCCE
VGLFLSKKTAGHVTMVEIQSRLAEMAMRSIQLNDLTDRYDVYNMPLKDALTKINADSIDN
EEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCHHHHHHHCCCCCCCC
IVCNPPYFEDLPSSKKNPNEHLALARHELTTSLEEVLQVSQKMLKMNGKLFLVHRPDRLP
EEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHH
EILTKLVKNRLAPKRIQFAHSHAGDEANMVLIEAIKDGKPNGTRILPPIVIYEGLEYSKA
HHHHHHHHHCCCHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCEECCHHEEECCCCHHHH
IKELLYGNSTD
HHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]