Definition Pediococcus pentosaceus ATCC 25745, complete genome.
Accession NC_008525
Length 1,832,387

Click here to switch to the map view.

The map label for this gene is 116492637

Identifier: 116492637

GI number: 116492637

Start: 872784

End: 873032

Strand: Direct

Name: 116492637

Synonym: PEPE_0871

Alternate gene names: NA

Gene position: 872784-873032 (Clockwise)

Preceding gene: 116492634

Following gene: 116492638

Centisome position: 47.63

GC content: 34.54

Gene sequence:

>249_bases
ATGGCCGATCAAGAAATGCAAAAATTAATTAAGAGAATCAATGAACTTGCTAAAAAAGCAAAAGAAGAAGGACTTAGTGA
CTTAGAGATTATCGAGCGAAAAGATCTGCGTCAAAAATATTTGAAGAAGTTCCGAGAGAGTTTCAGAAGTCAAGTTGAAA
TGATGCAAATTTTTGATAAAGAAGGCAAAGAAGTCACACCTGAAAAGGTAAAAGAAGTTCAACGAAAAAAGGGCTTACGT
GACGATTAG

Upstream 100 bases:

>100_bases
TCATAAAAAATCCTAATACTCAAACAAATGTTCGCCTTAAAAATTGAAATTAAAAGCTTTCCATAGTATGATTAAGCTAC
TAATAACGGAGGGATTTATT

Downstream 100 bases:

>100_bases
AACGGGGCTTTTGTTTTTAGCCGTTTTTGTGTAAAATGAATAGGTAAGTCGTTGGTAAGGAGGATTGTAAATGTCAACTG
GAATTTGGATTATGATTGTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 82; Mature: 81

Protein sequence:

>82_residues
MADQEMQKLIKRINELAKKAKEEGLSDLEIIERKDLRQKYLKKFRESFRSQVEMMQIFDKEGKEVTPEKVKEVQRKKGLR
DD

Sequences:

>Translated_82_residues
MADQEMQKLIKRINELAKKAKEEGLSDLEIIERKDLRQKYLKKFRESFRSQVEMMQIFDKEGKEVTPEKVKEVQRKKGLR
DD
>Mature_81_residues
ADQEMQKLIKRINELAKKAKEEGLSDLEIIERKDLRQKYLKKFRESFRSQVEMMQIFDKEGKEVTPEKVKEVQRKKGLRD
D

Specific function: Unknown

COG id: COG4224

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0291 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y871_PEDPA (Q03FU2)

Other databases:

- EMBL:   CP000422
- RefSeq:   YP_804372.1
- ProteinModelPortal:   Q03FU2
- SMR:   Q03FU2
- STRING:   Q03FU2
- GeneID:   4418177
- GenomeReviews:   CP000422_GR
- KEGG:   ppe:PEPE_0871
- NMPDR:   fig|278197.10.peg.774
- eggNOG:   COG4224
- HOGENOM:   HBG727491
- OMA:   TIENTTI
- ProtClustDB:   CLSK821371
- BioCyc:   PPEN278197:PEPE_0871-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01103
- InterPro:   IPR009242
- InterPro:   IPR023218
- Gene3D:   G3DSA:1.10.287.540

Pfam domain/function: PF05979 DUF896

EC number: NA

Molecular weight: Translated: 9885; Mature: 9753

Theoretical pI: Translated: 10.10; Mature: 10.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADQEMQKLIKRINELAKKAKEEGLSDLEIIERKDLRQKYLKKFRESFRSQVEMMQIFDK
CCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EGKEVTPEKVKEVQRKKGLRDD
CCCCCCHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
ADQEMQKLIKRINELAKKAKEEGLSDLEIIERKDLRQKYLKKFRESFRSQVEMMQIFDK
CHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EGKEVTPEKVKEVQRKKGLRDD
CCCCCCHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA