| Definition | Pediococcus pentosaceus ATCC 25745, complete genome. |
|---|---|
| Accession | NC_008525 |
| Length | 1,832,387 |
Click here to switch to the map view.
The map label for this gene is pheT [H]
Identifier: 116492490
GI number: 116492490
Start: 759055
End: 761484
Strand: Direct
Name: pheT [H]
Synonym: PEPE_0722
Alternate gene names: 116492490
Gene position: 759055-761484 (Clockwise)
Preceding gene: 116492489
Following gene: 116492491
Centisome position: 41.42
GC content: 37.49
Gene sequence:
>2430_bases ATGAAACTTTCATACAAGTGGTTATCTAAATATTTAGAACTAGACTTAGAACCTAAAGACTTGGCTGAAAAGATTGAACG TACAGCTGTTGAAGTTGATTCAGTTACAAGATTAGATTATAAATTAAAGAAAATTGTTGTGGGTCATACCCTAGAAGTGA CTGAACATCCTGATTCAGATCATTTGCACATTTGCCAAGTCGATGTTGGTGAAGAAGAACCAATTCAAATTGTTTGTGGT GCACCTAATATTGCTGCAGACCAAGATGTTATTGTTGCTCTCCACGGTTCAAGAATCAAAGACAACGTCAAAATTAAGCG TAGCAAAATGCGTGGAGTTCCATCTAATGGGATGATTTGTGCTCTGCAAGAAATTGGTTACCCAGACAATGTGGTACCTA AAGACTATGCAGATGGAATTTACGTATTCCCAGCTGACAGCCATGTTAAACCAGGTGATTCTGTAATGGAAGCTTTAGGA ATGGATGACGATGTGATTGATACATCCGTAACACCTAATCGTGGTGATATGTTCAGTATGAACGGTAATGCACACGAAAT TGCCGCTATTCTAGATCAAAAGGCTAATTTTGAAGTTTTGAAGGTCCAAGACGAACAAAAATCAGCTGATACTTTAGCCG ATCAAATAAAAGTTGAAATCGATGAGCAAGATGTTGCCCCAGTTTACAAGTTGATGGCCATTGAAAACGTGAAAATTGCG CCTAGTCCATTCTGGCTACAAACGACATTGATGAAGGCGGGAATTCGTCCTATTAATAATGTAGTGGATGTTACTAATTA CATTATGTTGAAATATGGACAACCTCTTCATGCCTATGATTTGGACCAACTTAAAGGTCAAACAATTTCAGTTGCTCCAG CGGGTGAAAATGTTAAATTTACTACTCTAGATGATGAAAAACGTGATTTGCGTCCAGAAGACCTTGTAATCACAGCTGAT GGGACCCCGATTGCAATGGCTGGTGTAATGGGTGGAATGGCTACAGAAGTTAGTGATCAAACTCAAAATATTGTTATTGA AGCAGCAATTTTTGACCCAATTAAAATCCGTAAAACTGCTCGTTACCATAATCTACATAGCGAAGCTGCAATGCGTTTTG AACGTGGTATTGACTATAGTTCACTTGATGATGCATTAAACGAAGCAGCCAGCTTAGTAGCTGATTTTAGTCAAGGGAAA GTGATGAGCGGGGTAGTTGTTGGCAATGATACTAAACTTAATCCTGAATCAATTACAATCGCTTTAGCTCGTATTAACAA AATTTTAGGTACGTCACTTACTAGTGAAGAAGTCGTAGCTATTTTTGATCGACTTGGATTTAGTACAGAATTAGATGCTA CAAAGCAGACCTTCAAGGTAACTGTTCCCGTTCGTCGTTGGGACATTCATATTGAAGCTGACTTGCTAGAGGAAGTTGCT CGAATCTTTGGTTACGACAACTTACCAGTGACATTACCAACTGGTGATCCAACTATTGGACAACTTACTACTGAACAGAA ATTGATGCGGGCCTCAAGAACAGTTATGGAAGGCTTAGGGCTTACTCAAGCCATGAGTTATGGACTTACAACCATTGCCA AGAGTCAACAATTTGTGAAGGGTGATCACGAACTAGTGAAGGTCGATTGGCCAATGACAAAGGACCGAGAAGCCTTAAGA ATGAATCTAATTAGTGGATTACTTGATGATATTGCTTACAATAAGGCACGTTCAGTGGAAAATGTTGCTCTTTATGAACA AGGGCGAGTTTTCTATGGAAATGGACAAGCACAACCAGAAGAAATTGAACATATTGCAGGAGCAATTACAGGTTCAATGC AGGCTAAGTCTTGGAATGAAAAAGAAAAGCCAGTAACTTTCTTTGATGTTAAGGGAATTGTAGAACAATACCTTAAGAAT GTTGCCGTTGCTGGAGAAGTAAGTTATGTTGCAGACCATGATCGTCAGGGGATGCATCCGGGACGCACTGCTGATGTTTT GCTTGATGGAGATGTAATTGGTTTTATTGGTCAAATTCATCCAACCACTGCAGAAGAGTTTAAGATTAAGGAAACTTATG TTTTTGAATTGAATTTAACAAAAATTATTCATGCCGAAAAGAAGTTACAACATTATGACGTAATTTCTAAATATCCTGCA ATTACACGAGACATTGCTATTTTAGTTAATAAGGAAGTTTCTAATACAGAAGTTCTAAACGTTATTAATGAAACTAAGCA AAAGAACTTGATAAAAGTTGAATTGTTTGATGTTTATGAAGGTAAGAACCTTGAAAAAGGGATGAAGTCCTTGGCATATC AATTTACTTATCAAGATACAAATGATACTTTGCAAGAAGATGCTATCAATGATGAATTTTCTAAGGTAATTAAAAACCTG GAAGAGAAATTAAATGTAACCGTTAGATAA
Upstream 100 bases:
>100_bases TCGTTTTGCAATGTTACGTTATGGTGTTGATGATATTCGTAATTTCTACCTAAATGATGTTAGATTCCTATCCCAATTCA ATAAGCGAGGTTAATAAAAA
Downstream 100 bases:
>100_bases CCGTATTAAATCTATGTTACTTTAATGCGAAGTTAAAGATAGTTATTGTATAATTACCATTATTGTAAATGATAGGAGAA ATGATCTTGGATAATAACAA
Product: phenylalanyl-tRNA synthetase beta subunit
Products: NA
Alternate protein names: Phenylalanine--tRNA ligase beta chain; PheRS [H]
Number of amino acids: Translated: 809; Mature: 809
Protein sequence:
>809_residues MKLSYKWLSKYLELDLEPKDLAEKIERTAVEVDSVTRLDYKLKKIVVGHTLEVTEHPDSDHLHICQVDVGEEEPIQIVCG APNIAADQDVIVALHGSRIKDNVKIKRSKMRGVPSNGMICALQEIGYPDNVVPKDYADGIYVFPADSHVKPGDSVMEALG MDDDVIDTSVTPNRGDMFSMNGNAHEIAAILDQKANFEVLKVQDEQKSADTLADQIKVEIDEQDVAPVYKLMAIENVKIA PSPFWLQTTLMKAGIRPINNVVDVTNYIMLKYGQPLHAYDLDQLKGQTISVAPAGENVKFTTLDDEKRDLRPEDLVITAD GTPIAMAGVMGGMATEVSDQTQNIVIEAAIFDPIKIRKTARYHNLHSEAAMRFERGIDYSSLDDALNEAASLVADFSQGK VMSGVVVGNDTKLNPESITIALARINKILGTSLTSEEVVAIFDRLGFSTELDATKQTFKVTVPVRRWDIHIEADLLEEVA RIFGYDNLPVTLPTGDPTIGQLTTEQKLMRASRTVMEGLGLTQAMSYGLTTIAKSQQFVKGDHELVKVDWPMTKDREALR MNLISGLLDDIAYNKARSVENVALYEQGRVFYGNGQAQPEEIEHIAGAITGSMQAKSWNEKEKPVTFFDVKGIVEQYLKN VAVAGEVSYVADHDRQGMHPGRTADVLLDGDVIGFIGQIHPTTAEEFKIKETYVFELNLTKIIHAEKKLQHYDVISKYPA ITRDIAILVNKEVSNTEVLNVINETKQKNLIKVELFDVYEGKNLEKGMKSLAYQFTYQDTNDTLQEDAINDEFSKVIKNL EEKLNVTVR
Sequences:
>Translated_809_residues MKLSYKWLSKYLELDLEPKDLAEKIERTAVEVDSVTRLDYKLKKIVVGHTLEVTEHPDSDHLHICQVDVGEEEPIQIVCG APNIAADQDVIVALHGSRIKDNVKIKRSKMRGVPSNGMICALQEIGYPDNVVPKDYADGIYVFPADSHVKPGDSVMEALG MDDDVIDTSVTPNRGDMFSMNGNAHEIAAILDQKANFEVLKVQDEQKSADTLADQIKVEIDEQDVAPVYKLMAIENVKIA PSPFWLQTTLMKAGIRPINNVVDVTNYIMLKYGQPLHAYDLDQLKGQTISVAPAGENVKFTTLDDEKRDLRPEDLVITAD GTPIAMAGVMGGMATEVSDQTQNIVIEAAIFDPIKIRKTARYHNLHSEAAMRFERGIDYSSLDDALNEAASLVADFSQGK VMSGVVVGNDTKLNPESITIALARINKILGTSLTSEEVVAIFDRLGFSTELDATKQTFKVTVPVRRWDIHIEADLLEEVA RIFGYDNLPVTLPTGDPTIGQLTTEQKLMRASRTVMEGLGLTQAMSYGLTTIAKSQQFVKGDHELVKVDWPMTKDREALR MNLISGLLDDIAYNKARSVENVALYEQGRVFYGNGQAQPEEIEHIAGAITGSMQAKSWNEKEKPVTFFDVKGIVEQYLKN VAVAGEVSYVADHDRQGMHPGRTADVLLDGDVIGFIGQIHPTTAEEFKIKETYVFELNLTKIIHAEKKLQHYDVISKYPA ITRDIAILVNKEVSNTEVLNVINETKQKNLIKVELFDVYEGKNLEKGMKSLAYQFTYQDTNDTLQEDAINDEFSKVIKNL EEKLNVTVR >Mature_809_residues MKLSYKWLSKYLELDLEPKDLAEKIERTAVEVDSVTRLDYKLKKIVVGHTLEVTEHPDSDHLHICQVDVGEEEPIQIVCG APNIAADQDVIVALHGSRIKDNVKIKRSKMRGVPSNGMICALQEIGYPDNVVPKDYADGIYVFPADSHVKPGDSVMEALG MDDDVIDTSVTPNRGDMFSMNGNAHEIAAILDQKANFEVLKVQDEQKSADTLADQIKVEIDEQDVAPVYKLMAIENVKIA PSPFWLQTTLMKAGIRPINNVVDVTNYIMLKYGQPLHAYDLDQLKGQTISVAPAGENVKFTTLDDEKRDLRPEDLVITAD GTPIAMAGVMGGMATEVSDQTQNIVIEAAIFDPIKIRKTARYHNLHSEAAMRFERGIDYSSLDDALNEAASLVADFSQGK VMSGVVVGNDTKLNPESITIALARINKILGTSLTSEEVVAIFDRLGFSTELDATKQTFKVTVPVRRWDIHIEADLLEEVA RIFGYDNLPVTLPTGDPTIGQLTTEQKLMRASRTVMEGLGLTQAMSYGLTTIAKSQQFVKGDHELVKVDWPMTKDREALR MNLISGLLDDIAYNKARSVENVALYEQGRVFYGNGQAQPEEIEHIAGAITGSMQAKSWNEKEKPVTFFDVKGIVEQYLKN VAVAGEVSYVADHDRQGMHPGRTADVLLDGDVIGFIGQIHPTTAEEFKIKETYVFELNLTKIIHAEKKLQHYDVISKYPA ITRDIAILVNKEVSNTEVLNVINETKQKNLIKVELFDVYEGKNLEKGMKSLAYQFTYQDTNDTLQEDAINDEFSKVIKNL EEKLNVTVR
Specific function: Unknown
COG id: COG0072
COG function: function code J; Phenylalanyl-tRNA synthetase beta subunit
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 tRNA-binding domain [H]
Homologues:
Organism=Escherichia coli, GI1788006, Length=817, Percent_Identity=33.2925336597307, Blast_Score=439, Evalue=1e-124, Organism=Caenorhabditis elegans, GI17533403, Length=283, Percent_Identity=24.3816254416961, Blast_Score=79, Evalue=1e-14,
Paralogues:
None
Copy number: 1,800 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005146 - InterPro: IPR005147 - InterPro: IPR009061 - InterPro: IPR012340 - InterPro: IPR016027 - InterPro: IPR004532 - InterPro: IPR020825 - InterPro: IPR005121 - InterPro: IPR002547 [H]
Pfam domain/function: PF03483 B3_4; PF03484 B5; PF03147 FDX-ACB; PF01588 tRNA_bind [H]
EC number: =6.1.1.20 [H]
Molecular weight: Translated: 90048; Mature: 90048
Theoretical pI: Translated: 4.70; Mature: 4.70
Prosite motif: PS50886 TRBD
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKLSYKWLSKYLELDLEPKDLAEKIERTAVEVDSVTRLDYKLKKIVVGHTLEVTEHPDSD CCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEHEEECCEEEECCCCCCC HLHICQVDVGEEEPIQIVCGAPNIAADQDVIVALHGSRIKDNVKIKRSKMRGVPSNGMIC CEEEEEEECCCCCCEEEEECCCCCCCCCCEEEEEECCCCCCCCEEEHHHHCCCCCCCCEE ALQEIGYPDNVVPKDYADGIYVFPADSHVKPGDSVMEALGMDDDVIDTSVTPNRGDMFSM EEECCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCEEEE NGNAHEIAAILDQKANFEVLKVQDEQKSADTLADQIKVEIDEQDVAPVYKLMAIENVKIA CCCHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHEEEEECCCCHHHHHHHHHCCCEEEC PSPFWLQTTLMKAGIRPINNVVDVTNYIMLKYGQPLHAYDLDQLKGQTISVAPAGENVKF CCCHHHHHHHHHHCCCHHHHHHHHHHEEEEECCCCCCCCCHHHHCCCEEEEEECCCCEEE TTLDDEKRDLRPEDLVITADGTPIAMAGVMGGMATEVSDQTQNIVIEAAIFDPIKIRKTA EEECCHHHCCCCCCEEEEECCCCEEHHHHHCCHHHHCCCCCCEEEEEEEECCCHHHHHHH RYHNLHSEAAMRFERGIDYSSLDDALNEAASLVADFSQGKVMSGVVVGNDTKLNPESITI HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHEEE ALARINKILGTSLTSEEVVAIFDRLGFSTELDATKQTFKVTVPVRRWDIHIEADLLEEVA EHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEEEEEEEEHHHHHHHH RIFGYDNLPVTLPTGDPTIGQLTTEQKLMRASRTVMEGLGLTQAMSYGLTTIAKSQQFVK HHHCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHCHHHHHCCHHHHC GDHELVKVDWPMTKDREALRMNLISGLLDDIAYNKARSVENVALYEQGRVFYGNGQAQPE CCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCEEEECCCCCCHH EIEHIAGAITGSMQAKSWNEKEKPVTFFDVKGIVEQYLKNVAVAGEVSYVADHDRQGMHP HHHHHHHHHHCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHEECCCEEEEECCCCCCCCC GRTADVLLDGDVIGFIGQIHPTTAEEFKIKETYVFELNLTKIIHAEKKLQHYDVISKYPA CCCEEEEECCCCEEEECCCCCCCHHHEEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHCCC ITRDIAILVNKEVSNTEVLNVINETKQKNLIKVELFDVYEGKNLEKGMKSLAYQFTYQDT HHCEEEEEEECCCCCHHHHHHHHHHHHCCEEEEEEEEECCCCCHHHHHHHHEEEEEECCC NDTLQEDAINDEFSKVIKNLEEKLNVTVR CCHHHHHCCCHHHHHHHHHHHHHCCEECC >Mature Secondary Structure MKLSYKWLSKYLELDLEPKDLAEKIERTAVEVDSVTRLDYKLKKIVVGHTLEVTEHPDSD CCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEHEEECCEEEECCCCCCC HLHICQVDVGEEEPIQIVCGAPNIAADQDVIVALHGSRIKDNVKIKRSKMRGVPSNGMIC CEEEEEEECCCCCCEEEEECCCCCCCCCCEEEEEECCCCCCCCEEEHHHHCCCCCCCCEE ALQEIGYPDNVVPKDYADGIYVFPADSHVKPGDSVMEALGMDDDVIDTSVTPNRGDMFSM EEECCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCEEEE NGNAHEIAAILDQKANFEVLKVQDEQKSADTLADQIKVEIDEQDVAPVYKLMAIENVKIA CCCHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHEEEEECCCCHHHHHHHHHCCCEEEC PSPFWLQTTLMKAGIRPINNVVDVTNYIMLKYGQPLHAYDLDQLKGQTISVAPAGENVKF CCCHHHHHHHHHHCCCHHHHHHHHHHEEEEECCCCCCCCCHHHHCCCEEEEEECCCCEEE TTLDDEKRDLRPEDLVITADGTPIAMAGVMGGMATEVSDQTQNIVIEAAIFDPIKIRKTA EEECCHHHCCCCCCEEEEECCCCEEHHHHHCCHHHHCCCCCCEEEEEEEECCCHHHHHHH RYHNLHSEAAMRFERGIDYSSLDDALNEAASLVADFSQGKVMSGVVVGNDTKLNPESITI HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHEEE ALARINKILGTSLTSEEVVAIFDRLGFSTELDATKQTFKVTVPVRRWDIHIEADLLEEVA EHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEEEEEEEEHHHHHHHH RIFGYDNLPVTLPTGDPTIGQLTTEQKLMRASRTVMEGLGLTQAMSYGLTTIAKSQQFVK HHHCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHCHHHHHCCHHHHC GDHELVKVDWPMTKDREALRMNLISGLLDDIAYNKARSVENVALYEQGRVFYGNGQAQPE CCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCEEEECCCCCCHH EIEHIAGAITGSMQAKSWNEKEKPVTFFDVKGIVEQYLKNVAVAGEVSYVADHDRQGMHP HHHHHHHHHHCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHEECCCEEEEECCCCCCCCC GRTADVLLDGDVIGFIGQIHPTTAEEFKIKETYVFELNLTKIIHAEKKLQHYDVISKYPA CCCEEEEECCCCEEEECCCCCCCHHHEEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHCCC ITRDIAILVNKEVSNTEVLNVINETKQKNLIKVELFDVYEGKNLEKGMKSLAYQFTYQDT HHCEEEEEEECCCCCHHHHHHHHHHHHCCEEEEEEEEECCCCCHHHHHHHHEEEEEECCC NDTLQEDAINDEFSKVIKNLEEKLNVTVR CCHHHHHCCCHHHHHHHHHHHHHCCEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12566566 [H]