Definition Pediococcus pentosaceus ATCC 25745, complete genome.
Accession NC_008525
Length 1,832,387

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The map label for this gene is pheT [H]

Identifier: 116492490

GI number: 116492490

Start: 759055

End: 761484

Strand: Direct

Name: pheT [H]

Synonym: PEPE_0722

Alternate gene names: 116492490

Gene position: 759055-761484 (Clockwise)

Preceding gene: 116492489

Following gene: 116492491

Centisome position: 41.42

GC content: 37.49

Gene sequence:

>2430_bases
ATGAAACTTTCATACAAGTGGTTATCTAAATATTTAGAACTAGACTTAGAACCTAAAGACTTGGCTGAAAAGATTGAACG
TACAGCTGTTGAAGTTGATTCAGTTACAAGATTAGATTATAAATTAAAGAAAATTGTTGTGGGTCATACCCTAGAAGTGA
CTGAACATCCTGATTCAGATCATTTGCACATTTGCCAAGTCGATGTTGGTGAAGAAGAACCAATTCAAATTGTTTGTGGT
GCACCTAATATTGCTGCAGACCAAGATGTTATTGTTGCTCTCCACGGTTCAAGAATCAAAGACAACGTCAAAATTAAGCG
TAGCAAAATGCGTGGAGTTCCATCTAATGGGATGATTTGTGCTCTGCAAGAAATTGGTTACCCAGACAATGTGGTACCTA
AAGACTATGCAGATGGAATTTACGTATTCCCAGCTGACAGCCATGTTAAACCAGGTGATTCTGTAATGGAAGCTTTAGGA
ATGGATGACGATGTGATTGATACATCCGTAACACCTAATCGTGGTGATATGTTCAGTATGAACGGTAATGCACACGAAAT
TGCCGCTATTCTAGATCAAAAGGCTAATTTTGAAGTTTTGAAGGTCCAAGACGAACAAAAATCAGCTGATACTTTAGCCG
ATCAAATAAAAGTTGAAATCGATGAGCAAGATGTTGCCCCAGTTTACAAGTTGATGGCCATTGAAAACGTGAAAATTGCG
CCTAGTCCATTCTGGCTACAAACGACATTGATGAAGGCGGGAATTCGTCCTATTAATAATGTAGTGGATGTTACTAATTA
CATTATGTTGAAATATGGACAACCTCTTCATGCCTATGATTTGGACCAACTTAAAGGTCAAACAATTTCAGTTGCTCCAG
CGGGTGAAAATGTTAAATTTACTACTCTAGATGATGAAAAACGTGATTTGCGTCCAGAAGACCTTGTAATCACAGCTGAT
GGGACCCCGATTGCAATGGCTGGTGTAATGGGTGGAATGGCTACAGAAGTTAGTGATCAAACTCAAAATATTGTTATTGA
AGCAGCAATTTTTGACCCAATTAAAATCCGTAAAACTGCTCGTTACCATAATCTACATAGCGAAGCTGCAATGCGTTTTG
AACGTGGTATTGACTATAGTTCACTTGATGATGCATTAAACGAAGCAGCCAGCTTAGTAGCTGATTTTAGTCAAGGGAAA
GTGATGAGCGGGGTAGTTGTTGGCAATGATACTAAACTTAATCCTGAATCAATTACAATCGCTTTAGCTCGTATTAACAA
AATTTTAGGTACGTCACTTACTAGTGAAGAAGTCGTAGCTATTTTTGATCGACTTGGATTTAGTACAGAATTAGATGCTA
CAAAGCAGACCTTCAAGGTAACTGTTCCCGTTCGTCGTTGGGACATTCATATTGAAGCTGACTTGCTAGAGGAAGTTGCT
CGAATCTTTGGTTACGACAACTTACCAGTGACATTACCAACTGGTGATCCAACTATTGGACAACTTACTACTGAACAGAA
ATTGATGCGGGCCTCAAGAACAGTTATGGAAGGCTTAGGGCTTACTCAAGCCATGAGTTATGGACTTACAACCATTGCCA
AGAGTCAACAATTTGTGAAGGGTGATCACGAACTAGTGAAGGTCGATTGGCCAATGACAAAGGACCGAGAAGCCTTAAGA
ATGAATCTAATTAGTGGATTACTTGATGATATTGCTTACAATAAGGCACGTTCAGTGGAAAATGTTGCTCTTTATGAACA
AGGGCGAGTTTTCTATGGAAATGGACAAGCACAACCAGAAGAAATTGAACATATTGCAGGAGCAATTACAGGTTCAATGC
AGGCTAAGTCTTGGAATGAAAAAGAAAAGCCAGTAACTTTCTTTGATGTTAAGGGAATTGTAGAACAATACCTTAAGAAT
GTTGCCGTTGCTGGAGAAGTAAGTTATGTTGCAGACCATGATCGTCAGGGGATGCATCCGGGACGCACTGCTGATGTTTT
GCTTGATGGAGATGTAATTGGTTTTATTGGTCAAATTCATCCAACCACTGCAGAAGAGTTTAAGATTAAGGAAACTTATG
TTTTTGAATTGAATTTAACAAAAATTATTCATGCCGAAAAGAAGTTACAACATTATGACGTAATTTCTAAATATCCTGCA
ATTACACGAGACATTGCTATTTTAGTTAATAAGGAAGTTTCTAATACAGAAGTTCTAAACGTTATTAATGAAACTAAGCA
AAAGAACTTGATAAAAGTTGAATTGTTTGATGTTTATGAAGGTAAGAACCTTGAAAAAGGGATGAAGTCCTTGGCATATC
AATTTACTTATCAAGATACAAATGATACTTTGCAAGAAGATGCTATCAATGATGAATTTTCTAAGGTAATTAAAAACCTG
GAAGAGAAATTAAATGTAACCGTTAGATAA

Upstream 100 bases:

>100_bases
TCGTTTTGCAATGTTACGTTATGGTGTTGATGATATTCGTAATTTCTACCTAAATGATGTTAGATTCCTATCCCAATTCA
ATAAGCGAGGTTAATAAAAA

Downstream 100 bases:

>100_bases
CCGTATTAAATCTATGTTACTTTAATGCGAAGTTAAAGATAGTTATTGTATAATTACCATTATTGTAAATGATAGGAGAA
ATGATCTTGGATAATAACAA

Product: phenylalanyl-tRNA synthetase beta subunit

Products: NA

Alternate protein names: Phenylalanine--tRNA ligase beta chain; PheRS [H]

Number of amino acids: Translated: 809; Mature: 809

Protein sequence:

>809_residues
MKLSYKWLSKYLELDLEPKDLAEKIERTAVEVDSVTRLDYKLKKIVVGHTLEVTEHPDSDHLHICQVDVGEEEPIQIVCG
APNIAADQDVIVALHGSRIKDNVKIKRSKMRGVPSNGMICALQEIGYPDNVVPKDYADGIYVFPADSHVKPGDSVMEALG
MDDDVIDTSVTPNRGDMFSMNGNAHEIAAILDQKANFEVLKVQDEQKSADTLADQIKVEIDEQDVAPVYKLMAIENVKIA
PSPFWLQTTLMKAGIRPINNVVDVTNYIMLKYGQPLHAYDLDQLKGQTISVAPAGENVKFTTLDDEKRDLRPEDLVITAD
GTPIAMAGVMGGMATEVSDQTQNIVIEAAIFDPIKIRKTARYHNLHSEAAMRFERGIDYSSLDDALNEAASLVADFSQGK
VMSGVVVGNDTKLNPESITIALARINKILGTSLTSEEVVAIFDRLGFSTELDATKQTFKVTVPVRRWDIHIEADLLEEVA
RIFGYDNLPVTLPTGDPTIGQLTTEQKLMRASRTVMEGLGLTQAMSYGLTTIAKSQQFVKGDHELVKVDWPMTKDREALR
MNLISGLLDDIAYNKARSVENVALYEQGRVFYGNGQAQPEEIEHIAGAITGSMQAKSWNEKEKPVTFFDVKGIVEQYLKN
VAVAGEVSYVADHDRQGMHPGRTADVLLDGDVIGFIGQIHPTTAEEFKIKETYVFELNLTKIIHAEKKLQHYDVISKYPA
ITRDIAILVNKEVSNTEVLNVINETKQKNLIKVELFDVYEGKNLEKGMKSLAYQFTYQDTNDTLQEDAINDEFSKVIKNL
EEKLNVTVR

Sequences:

>Translated_809_residues
MKLSYKWLSKYLELDLEPKDLAEKIERTAVEVDSVTRLDYKLKKIVVGHTLEVTEHPDSDHLHICQVDVGEEEPIQIVCG
APNIAADQDVIVALHGSRIKDNVKIKRSKMRGVPSNGMICALQEIGYPDNVVPKDYADGIYVFPADSHVKPGDSVMEALG
MDDDVIDTSVTPNRGDMFSMNGNAHEIAAILDQKANFEVLKVQDEQKSADTLADQIKVEIDEQDVAPVYKLMAIENVKIA
PSPFWLQTTLMKAGIRPINNVVDVTNYIMLKYGQPLHAYDLDQLKGQTISVAPAGENVKFTTLDDEKRDLRPEDLVITAD
GTPIAMAGVMGGMATEVSDQTQNIVIEAAIFDPIKIRKTARYHNLHSEAAMRFERGIDYSSLDDALNEAASLVADFSQGK
VMSGVVVGNDTKLNPESITIALARINKILGTSLTSEEVVAIFDRLGFSTELDATKQTFKVTVPVRRWDIHIEADLLEEVA
RIFGYDNLPVTLPTGDPTIGQLTTEQKLMRASRTVMEGLGLTQAMSYGLTTIAKSQQFVKGDHELVKVDWPMTKDREALR
MNLISGLLDDIAYNKARSVENVALYEQGRVFYGNGQAQPEEIEHIAGAITGSMQAKSWNEKEKPVTFFDVKGIVEQYLKN
VAVAGEVSYVADHDRQGMHPGRTADVLLDGDVIGFIGQIHPTTAEEFKIKETYVFELNLTKIIHAEKKLQHYDVISKYPA
ITRDIAILVNKEVSNTEVLNVINETKQKNLIKVELFDVYEGKNLEKGMKSLAYQFTYQDTNDTLQEDAINDEFSKVIKNL
EEKLNVTVR
>Mature_809_residues
MKLSYKWLSKYLELDLEPKDLAEKIERTAVEVDSVTRLDYKLKKIVVGHTLEVTEHPDSDHLHICQVDVGEEEPIQIVCG
APNIAADQDVIVALHGSRIKDNVKIKRSKMRGVPSNGMICALQEIGYPDNVVPKDYADGIYVFPADSHVKPGDSVMEALG
MDDDVIDTSVTPNRGDMFSMNGNAHEIAAILDQKANFEVLKVQDEQKSADTLADQIKVEIDEQDVAPVYKLMAIENVKIA
PSPFWLQTTLMKAGIRPINNVVDVTNYIMLKYGQPLHAYDLDQLKGQTISVAPAGENVKFTTLDDEKRDLRPEDLVITAD
GTPIAMAGVMGGMATEVSDQTQNIVIEAAIFDPIKIRKTARYHNLHSEAAMRFERGIDYSSLDDALNEAASLVADFSQGK
VMSGVVVGNDTKLNPESITIALARINKILGTSLTSEEVVAIFDRLGFSTELDATKQTFKVTVPVRRWDIHIEADLLEEVA
RIFGYDNLPVTLPTGDPTIGQLTTEQKLMRASRTVMEGLGLTQAMSYGLTTIAKSQQFVKGDHELVKVDWPMTKDREALR
MNLISGLLDDIAYNKARSVENVALYEQGRVFYGNGQAQPEEIEHIAGAITGSMQAKSWNEKEKPVTFFDVKGIVEQYLKN
VAVAGEVSYVADHDRQGMHPGRTADVLLDGDVIGFIGQIHPTTAEEFKIKETYVFELNLTKIIHAEKKLQHYDVISKYPA
ITRDIAILVNKEVSNTEVLNVINETKQKNLIKVELFDVYEGKNLEKGMKSLAYQFTYQDTNDTLQEDAINDEFSKVIKNL
EEKLNVTVR

Specific function: Unknown

COG id: COG0072

COG function: function code J; Phenylalanyl-tRNA synthetase beta subunit

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 tRNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788006, Length=817, Percent_Identity=33.2925336597307, Blast_Score=439, Evalue=1e-124,
Organism=Caenorhabditis elegans, GI17533403, Length=283, Percent_Identity=24.3816254416961, Blast_Score=79, Evalue=1e-14,

Paralogues:

None

Copy number: 1,800 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005146
- InterPro:   IPR005147
- InterPro:   IPR009061
- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR004532
- InterPro:   IPR020825
- InterPro:   IPR005121
- InterPro:   IPR002547 [H]

Pfam domain/function: PF03483 B3_4; PF03484 B5; PF03147 FDX-ACB; PF01588 tRNA_bind [H]

EC number: =6.1.1.20 [H]

Molecular weight: Translated: 90048; Mature: 90048

Theoretical pI: Translated: 4.70; Mature: 4.70

Prosite motif: PS50886 TRBD

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLSYKWLSKYLELDLEPKDLAEKIERTAVEVDSVTRLDYKLKKIVVGHTLEVTEHPDSD
CCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEHEEECCEEEECCCCCCC
HLHICQVDVGEEEPIQIVCGAPNIAADQDVIVALHGSRIKDNVKIKRSKMRGVPSNGMIC
CEEEEEEECCCCCCEEEEECCCCCCCCCCEEEEEECCCCCCCCEEEHHHHCCCCCCCCEE
ALQEIGYPDNVVPKDYADGIYVFPADSHVKPGDSVMEALGMDDDVIDTSVTPNRGDMFSM
EEECCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCEEEE
NGNAHEIAAILDQKANFEVLKVQDEQKSADTLADQIKVEIDEQDVAPVYKLMAIENVKIA
CCCHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHEEEEECCCCHHHHHHHHHCCCEEEC
PSPFWLQTTLMKAGIRPINNVVDVTNYIMLKYGQPLHAYDLDQLKGQTISVAPAGENVKF
CCCHHHHHHHHHHCCCHHHHHHHHHHEEEEECCCCCCCCCHHHHCCCEEEEEECCCCEEE
TTLDDEKRDLRPEDLVITADGTPIAMAGVMGGMATEVSDQTQNIVIEAAIFDPIKIRKTA
EEECCHHHCCCCCCEEEEECCCCEEHHHHHCCHHHHCCCCCCEEEEEEEECCCHHHHHHH
RYHNLHSEAAMRFERGIDYSSLDDALNEAASLVADFSQGKVMSGVVVGNDTKLNPESITI
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHEEE
ALARINKILGTSLTSEEVVAIFDRLGFSTELDATKQTFKVTVPVRRWDIHIEADLLEEVA
EHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEEEEEEEEHHHHHHHH
RIFGYDNLPVTLPTGDPTIGQLTTEQKLMRASRTVMEGLGLTQAMSYGLTTIAKSQQFVK
HHHCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHCHHHHHCCHHHHC
GDHELVKVDWPMTKDREALRMNLISGLLDDIAYNKARSVENVALYEQGRVFYGNGQAQPE
CCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCEEEECCCCCCHH
EIEHIAGAITGSMQAKSWNEKEKPVTFFDVKGIVEQYLKNVAVAGEVSYVADHDRQGMHP
HHHHHHHHHHCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHEECCCEEEEECCCCCCCCC
GRTADVLLDGDVIGFIGQIHPTTAEEFKIKETYVFELNLTKIIHAEKKLQHYDVISKYPA
CCCEEEEECCCCEEEECCCCCCCHHHEEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHCCC
ITRDIAILVNKEVSNTEVLNVINETKQKNLIKVELFDVYEGKNLEKGMKSLAYQFTYQDT
HHCEEEEEEECCCCCHHHHHHHHHHHHCCEEEEEEEEECCCCCHHHHHHHHEEEEEECCC
NDTLQEDAINDEFSKVIKNLEEKLNVTVR
CCHHHHHCCCHHHHHHHHHHHHHCCEECC
>Mature Secondary Structure
MKLSYKWLSKYLELDLEPKDLAEKIERTAVEVDSVTRLDYKLKKIVVGHTLEVTEHPDSD
CCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEHEEECCEEEECCCCCCC
HLHICQVDVGEEEPIQIVCGAPNIAADQDVIVALHGSRIKDNVKIKRSKMRGVPSNGMIC
CEEEEEEECCCCCCEEEEECCCCCCCCCCEEEEEECCCCCCCCEEEHHHHCCCCCCCCEE
ALQEIGYPDNVVPKDYADGIYVFPADSHVKPGDSVMEALGMDDDVIDTSVTPNRGDMFSM
EEECCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCEEEE
NGNAHEIAAILDQKANFEVLKVQDEQKSADTLADQIKVEIDEQDVAPVYKLMAIENVKIA
CCCHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHEEEEECCCCHHHHHHHHHCCCEEEC
PSPFWLQTTLMKAGIRPINNVVDVTNYIMLKYGQPLHAYDLDQLKGQTISVAPAGENVKF
CCCHHHHHHHHHHCCCHHHHHHHHHHEEEEECCCCCCCCCHHHHCCCEEEEEECCCCEEE
TTLDDEKRDLRPEDLVITADGTPIAMAGVMGGMATEVSDQTQNIVIEAAIFDPIKIRKTA
EEECCHHHCCCCCCEEEEECCCCEEHHHHHCCHHHHCCCCCCEEEEEEEECCCHHHHHHH
RYHNLHSEAAMRFERGIDYSSLDDALNEAASLVADFSQGKVMSGVVVGNDTKLNPESITI
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHEEE
ALARINKILGTSLTSEEVVAIFDRLGFSTELDATKQTFKVTVPVRRWDIHIEADLLEEVA
EHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEEEEEEEEHHHHHHHH
RIFGYDNLPVTLPTGDPTIGQLTTEQKLMRASRTVMEGLGLTQAMSYGLTTIAKSQQFVK
HHHCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHCHHHHHCCHHHHC
GDHELVKVDWPMTKDREALRMNLISGLLDDIAYNKARSVENVALYEQGRVFYGNGQAQPE
CCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCEEEECCCCCCHH
EIEHIAGAITGSMQAKSWNEKEKPVTFFDVKGIVEQYLKNVAVAGEVSYVADHDRQGMHP
HHHHHHHHHHCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHEECCCEEEEECCCCCCCCC
GRTADVLLDGDVIGFIGQIHPTTAEEFKIKETYVFELNLTKIIHAEKKLQHYDVISKYPA
CCCEEEEECCCCEEEECCCCCCCHHHEEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHCCC
ITRDIAILVNKEVSNTEVLNVINETKQKNLIKVELFDVYEGKNLEKGMKSLAYQFTYQDT
HHCEEEEEEECCCCCHHHHHHHHHHHHCCEEEEEEEEECCCCCHHHHHHHHEEEEEECCC
NDTLQEDAINDEFSKVIKNLEEKLNVTVR
CCHHHHHCCCHHHHHHHHHHHHHCCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12566566 [H]