| Definition | Pediococcus pentosaceus ATCC 25745, complete genome. |
|---|---|
| Accession | NC_008525 |
| Length | 1,832,387 |
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The map label for this gene is 116492351
Identifier: 116492351
GI number: 116492351
Start: 612292
End: 613263
Strand: Direct
Name: 116492351
Synonym: PEPE_0556
Alternate gene names: NA
Gene position: 612292-613263 (Clockwise)
Preceding gene: 116492350
Following gene: 116492353
Centisome position: 33.41
GC content: 37.14
Gene sequence:
>972_bases ATGAAAAAAATATTCACGTTGGTATTTATATTTGTAATCAGCATTCTAACTGCGACGAATGTACATGCTGATCATAAACT TGCTAGTTATTCAGTGACACCCATTTTTTCGGAACATCAGACGGATGGAGCCGATAGCTATTTTGACATCAAATGGCCAC CAGCTAGTAAGGAATCATTTGGTATTAAAATCACAAATAATACTAAAAAGACCAAGCGATTTGAAATTGAAGTGAACAAA GCTCGGACTAATCGTAACGGCATTGTTGACTATTCTGATCGTACTCCGGAAAAAGCTAATACGGTTTACAAATTGACTCA AATGATTAGGTTGCCTAAAGAAGTCGAAGTTACTCCCAACAGTAGCCAAATTATTCACGGCAGCATTAGTTTTCCAGCTA AAGATTTCAATGGAATTTTGATGGCTGGATTACATTTTACGGAGAAAACGACAACAGCAAAGAAAAATACAGTTTCTAAC ACGGTTGCTTATAACATTCCGTTCGTAATCCGCGGAAATCATGACCAACGTCCCAAACCACGGTTATCCCTAGATCAATT GAAGATGACTAAACCTAACTTGAGTACTTACGAATTAGATGCAAAGCTTACCAACCATCATCAAAATTTACTTAAGAGTG TCAAAACGGTTTCGTCCATCAAAAATATGGATAATAAAACCCTCAAAAAGGAAACTAAGCGGATTGACATTACGCCTGAA ACAACTTTTGAGAATCCTATCCAAGTACCTAAAAATATAAAAGCAGGTCAATACAAGCTTGTTTTGACCATGCAACATGG AAAAGATCATTGGAAATTTGAAAAGAACTTCAAGATTAAGCCAGCTGATTTGAAGGTCGCTAAGCGCCATCAGATTCAAA ATCATTCGGCCTTATTCATCGGACTGGCGGTAATTGCGCTCATCGTAATTGGCGTTGGCTGGATTATATTCAAGAAGCTA AAACGAAAATAG
Upstream 100 bases:
>100_bases ATGGAATTTAACTAAGACTCAAACAGAACAAATTACAGAATAGCACCATTATTCCGAGGAGAGACTTAGTTCTCTCTTCT TTTTTTGAAAAGAGATCGAT
Downstream 100 bases:
>100_bases TTTTTTAACCCAAAAGAAGGCTCGCCGTTAAGCGAACCTTCTTTTTATTTGTCGTCTTTATGCATTTTATCTTTGAGTTC TTCCATGGCGCCTTCAGCTG
Product: cell surface protein
Products: NA
Alternate protein names: C-Terminal Membrane Anchored Cell Surface Protein; Secreted Protein
Number of amino acids: Translated: 323; Mature: 323
Protein sequence:
>323_residues MKKIFTLVFIFVISILTATNVHADHKLASYSVTPIFSEHQTDGADSYFDIKWPPASKESFGIKITNNTKKTKRFEIEVNK ARTNRNGIVDYSDRTPEKANTVYKLTQMIRLPKEVEVTPNSSQIIHGSISFPAKDFNGILMAGLHFTEKTTTAKKNTVSN TVAYNIPFVIRGNHDQRPKPRLSLDQLKMTKPNLSTYELDAKLTNHHQNLLKSVKTVSSIKNMDNKTLKKETKRIDITPE TTFENPIQVPKNIKAGQYKLVLTMQHGKDHWKFEKNFKIKPADLKVAKRHQIQNHSALFIGLAVIALIVIGVGWIIFKKL KRK
Sequences:
>Translated_323_residues MKKIFTLVFIFVISILTATNVHADHKLASYSVTPIFSEHQTDGADSYFDIKWPPASKESFGIKITNNTKKTKRFEIEVNK ARTNRNGIVDYSDRTPEKANTVYKLTQMIRLPKEVEVTPNSSQIIHGSISFPAKDFNGILMAGLHFTEKTTTAKKNTVSN TVAYNIPFVIRGNHDQRPKPRLSLDQLKMTKPNLSTYELDAKLTNHHQNLLKSVKTVSSIKNMDNKTLKKETKRIDITPE TTFENPIQVPKNIKAGQYKLVLTMQHGKDHWKFEKNFKIKPADLKVAKRHQIQNHSALFIGLAVIALIVIGVGWIIFKKL KRK >Mature_323_residues MKKIFTLVFIFVISILTATNVHADHKLASYSVTPIFSEHQTDGADSYFDIKWPPASKESFGIKITNNTKKTKRFEIEVNK ARTNRNGIVDYSDRTPEKANTVYKLTQMIRLPKEVEVTPNSSQIIHGSISFPAKDFNGILMAGLHFTEKTTTAKKNTVSN TVAYNIPFVIRGNHDQRPKPRLSLDQLKMTKPNLSTYELDAKLTNHHQNLLKSVKTVSSIKNMDNKTLKKETKRIDITPE TTFENPIQVPKNIKAGQYKLVLTMQHGKDHWKFEKNFKIKPADLKVAKRHQIQNHSALFIGLAVIALIVIGVGWIIFKKL KRK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 36805; Mature: 36805
Theoretical pI: Translated: 10.72; Mature: 10.72
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKIFTLVFIFVISILTATNVHADHKLASYSVTPIFSEHQTDGADSYFDIKWPPASKESF CHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCCE GIKITNNTKKTKRFEIEVNKARTNRNGIVDYSDRTPEKANTVYKLTQMIRLPKEVEVTPN EEEEECCCCCCEEEEEEEEECCCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCEEECCC SSQIIHGSISFPAKDFNGILMAGLHFTEKTTTAKKNTVSNTVAYNIPFVIRGNHDQRPKP CCEEEEEEECCCCCCCCCEEEEEEEECCCCCCCCCCCCCCEEEEECCEEEECCCCCCCCC RLSLDQLKMTKPNLSTYELDAKLTNHHQNLLKSVKTVSSIKNMDNKTLKKETKRIDITPE CCCHHHHEECCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHEEECCCC TTFENPIQVPKNIKAGQYKLVLTMQHGKDHWKFEKNFKIKPADLKVAKRHQIQNHSALFI CCCCCCCCCCCCCCCCCEEEEEEEECCCCCCEECCCCEECCCCHHHHHHHHCCCCCHHHH GLAVIALIVIGVGWIIFKKLKRK HHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MKKIFTLVFIFVISILTATNVHADHKLASYSVTPIFSEHQTDGADSYFDIKWPPASKESF CHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCCE GIKITNNTKKTKRFEIEVNKARTNRNGIVDYSDRTPEKANTVYKLTQMIRLPKEVEVTPN EEEEECCCCCCEEEEEEEEECCCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCEEECCC SSQIIHGSISFPAKDFNGILMAGLHFTEKTTTAKKNTVSNTVAYNIPFVIRGNHDQRPKP CCEEEEEEECCCCCCCCCEEEEEEEECCCCCCCCCCCCCCEEEEECCEEEECCCCCCCCC RLSLDQLKMTKPNLSTYELDAKLTNHHQNLLKSVKTVSSIKNMDNKTLKKETKRIDITPE CCCHHHHEECCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHEEECCCC TTFENPIQVPKNIKAGQYKLVLTMQHGKDHWKFEKNFKIKPADLKVAKRHQIQNHSALFI CCCCCCCCCCCCCCCCCEEEEEEEECCCCCCEECCCCEECCCCHHHHHHHHCCCCCHHHH GLAVIALIVIGVGWIIFKKLKRK HHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA