| Definition | Pediococcus pentosaceus ATCC 25745, complete genome. |
|---|---|
| Accession | NC_008525 |
| Length | 1,832,387 |
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The map label for this gene is sau3AIM [H]
Identifier: 116492328
GI number: 116492328
Start: 587203
End: 588489
Strand: Direct
Name: sau3AIM [H]
Synonym: PEPE_0532
Alternate gene names: 116492328
Gene position: 587203-588489 (Clockwise)
Preceding gene: 116492326
Following gene: 116492329
Centisome position: 32.05
GC content: 33.57
Gene sequence:
>1287_bases ATGACAAAAGAATTGAAAGTTTTAGAATTGTTCGCAGGAGTTGGAGGATTTCGTGTAGGGTTAGAGCATGCAAATGCTAG CTTATACAAGACGTTATGGTCAAATCAATGGGAACCTGGAAAAAAATCACAGGATGCTTTTGAAGTTTATAATTATCATT TTCCGAATTCGGAAAATATAAACGAAAATATCTCTGAAATATCTAACGAAAAATTTAAAACGATGAATGCAGACTTGATT GTTGGTGGCTTTCCTTGTCAAGATTATTCGGTTGCACGTAGTAAGAAGCATGAAATGGGTATTGAAGGAAAAAAAGGAGT TTTATTCTGGGATATTATTAGAGCGGTAGAGAATATACATCCTAAATACTTAATTTTAGAAAATGTGGACCGCCTTTTAA AGTCACCTTCTACCCAACGTGGTCGTGATTTTGCCATTATGCTGGCTTCGTTTAATAAGTTAGGTTATTCGGTAGAATGG AGAGTTATTAATGCTGCTGAGTATGGATTTGGGCAAAGACGCAGGCGAGTGTATTTTTTTGTTTACCGAAATGATACGCC ATTTGCTAAGAAAATGGATGAATTATTTGAAACGGATATAGAAAGTGTATTGGTTGACGAAACTAAATATGATGAATATA TCTTCTCGAAAGGTTTATTTGCGCGTCAATTTCCAATAAAACAAGAGGTTTATAAAAAGAGACATGATTATTACGAATTA TCAGATGATATTGTAAATATTTCAGATAATTTTAGTGGTAAAGTATGGAATACAGGTATAATGCGTCATGGTCGGTATTT TACAATTGATACGAAACCTTTGGGTAATGAAGAACCAATTCCACTAAAAGATACCTTACAAAGGGATACTGAAATTGATG AGAAATTCTTTATTACTGATAAAAATAAAATAGAGAAATTTGCATATCTCAGAGGTCCTAAAAAAATTCAAAGAGTTAGC GCTAGCGGTCATGAATACACTTACTCTGAAGGTGGAATGTCACCTTATGAGAATATTGATTTACCTAGTCGAACTATGCT AACTTCAGAAGGAACAGTTAATCGATCAACCCACTTCATTAAAACAAAAGACAATCGTTATCGTTTGATAACTCCAATTG AGGCTGAAAGGCTGCAGAATTTTGATGATGATTGGACTAAAATTAAGAAATTAGCAGATGGTTCCACAACACAGGTTTCG GATAGAATGCGAATGTTTTTTATGGGGAATGCATTGGTAACTGGTGTTATTAAAAGAATTGGAATTGAATTAGAAAAAAT AATCTAG
Upstream 100 bases:
>100_bases CTCCAGCTAGTGCTTTTTAATTTATTATATCACTTGATAATGTTGATCAATTGCGTATTTTAATGTATAATAACTAATAC GAAAGGATGTTCGCTATATT
Downstream 100 bases:
>100_bases AGTTTGATAAATTTCTGTATAAAAAAGTAAGAAGTTAATTAAAAAATAACTTTTTACTTTTTTTGCTATTTCTAGTTAAA TAGGTATATTAAATGGATAA
Product: site-specific DNA methylase
Products: NA
Alternate protein names: M.Sau3AI; Cytosine-specific methyltransferase Sau3AI [H]
Number of amino acids: Translated: 428; Mature: 427
Protein sequence:
>428_residues MTKELKVLELFAGVGGFRVGLEHANASLYKTLWSNQWEPGKKSQDAFEVYNYHFPNSENINENISEISNEKFKTMNADLI VGGFPCQDYSVARSKKHEMGIEGKKGVLFWDIIRAVENIHPKYLILENVDRLLKSPSTQRGRDFAIMLASFNKLGYSVEW RVINAAEYGFGQRRRRVYFFVYRNDTPFAKKMDELFETDIESVLVDETKYDEYIFSKGLFARQFPIKQEVYKKRHDYYEL SDDIVNISDNFSGKVWNTGIMRHGRYFTIDTKPLGNEEPIPLKDTLQRDTEIDEKFFITDKNKIEKFAYLRGPKKIQRVS ASGHEYTYSEGGMSPYENIDLPSRTMLTSEGTVNRSTHFIKTKDNRYRLITPIEAERLQNFDDDWTKIKKLADGSTTQVS DRMRMFFMGNALVTGVIKRIGIELEKII
Sequences:
>Translated_428_residues MTKELKVLELFAGVGGFRVGLEHANASLYKTLWSNQWEPGKKSQDAFEVYNYHFPNSENINENISEISNEKFKTMNADLI VGGFPCQDYSVARSKKHEMGIEGKKGVLFWDIIRAVENIHPKYLILENVDRLLKSPSTQRGRDFAIMLASFNKLGYSVEW RVINAAEYGFGQRRRRVYFFVYRNDTPFAKKMDELFETDIESVLVDETKYDEYIFSKGLFARQFPIKQEVYKKRHDYYEL SDDIVNISDNFSGKVWNTGIMRHGRYFTIDTKPLGNEEPIPLKDTLQRDTEIDEKFFITDKNKIEKFAYLRGPKKIQRVS ASGHEYTYSEGGMSPYENIDLPSRTMLTSEGTVNRSTHFIKTKDNRYRLITPIEAERLQNFDDDWTKIKKLADGSTTQVS DRMRMFFMGNALVTGVIKRIGIELEKII >Mature_427_residues TKELKVLELFAGVGGFRVGLEHANASLYKTLWSNQWEPGKKSQDAFEVYNYHFPNSENINENISEISNEKFKTMNADLIV GGFPCQDYSVARSKKHEMGIEGKKGVLFWDIIRAVENIHPKYLILENVDRLLKSPSTQRGRDFAIMLASFNKLGYSVEWR VINAAEYGFGQRRRRVYFFVYRNDTPFAKKMDELFETDIESVLVDETKYDEYIFSKGLFARQFPIKQEVYKKRHDYYELS DDIVNISDNFSGKVWNTGIMRHGRYFTIDTKPLGNEEPIPLKDTLQRDTEIDEKFFITDKNKIEKFAYLRGPKKIQRVSA SGHEYTYSEGGMSPYENIDLPSRTMLTSEGTVNRSTHFIKTKDNRYRLITPIEAERLQNFDDDWTKIKKLADGSTTQVSD RMRMFFMGNALVTGVIKRIGIELEKII
Specific function: This methylase recognizes the double-stranded sequence GATC, causes specific methylation on C-4 on both strands and protects the DNA from cleavage by the Sau3AI endonuclease [H]
COG id: COG0270
COG function: function code L; Site-specific DNA methylase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the C5-methyltransferase family [H]
Homologues:
Organism=Escherichia coli, GI1788271, Length=210, Percent_Identity=25.7142857142857, Blast_Score=79, Evalue=7e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR018117 - InterPro: IPR001525 [H]
Pfam domain/function: PF00145 DNA_methylase [H]
EC number: =2.1.1.37 [H]
Molecular weight: Translated: 49826; Mature: 49695
Theoretical pI: Translated: 8.65; Mature: 8.65
Prosite motif: PS00094 C5_MTASE_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTKELKVLELFAGVGGFRVGLEHANASLYKTLWSNQWEPGKKSQDAFEVYNYHFPNSENI CCCCHHHHHHHHCCCCEEEEHHHCCHHHHHHHHCCCCCCCCCCCCHHHHEEEECCCCCCC NENISEISNEKFKTMNADLIVGGFPCQDYSVARSKKHEMGIEGKKGVLFWDIIRAVENIH CHHHHHHCCHHHEECCCCEEEECCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCC PKYLILENVDRLLKSPSTQRGRDFAIMLASFNKLGYSVEWRVINAAEYGFGQRRRRVYFF CCEEEHHHHHHHHCCCCCCCCCEEEEEEEHHHHCCCEEEEEEEEHHHCCCCCCCCEEEEE VYRNDTPFAKKMDELFETDIESVLVDETKYDEYIFSKGLFARQFPIKQEVYKKRHDYYEL EEECCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHCCCCHHHHHHHHCCCEEC SDDIVNISDNFSGKVWNTGIMRHGRYFTIDTKPLGNEEPIPLKDTLQRDTEIDEKFFITD CCCEEECCCCCCCCEEECHHEECCCEEEEECCCCCCCCCCCHHHHHHCCCCCCCEEEEEC KNKIEKFAYLRGPKKIQRVSASGHEYTYSEGGMSPYENIDLPSRTMLTSEGTVNRSTHFI HHHHHHHHHHCCHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCEEEECCCCCCCCEEEE KTKDNRYRLITPIEAERLQNFDDDWTKIKKLADGSTTQVSDRMRMFFMGNALVTGVIKRI EECCCCEEEEECCCHHHHCCCCHHHHHHHHHCCCCCHHHHHHHEEEHCCHHHHHHHHHHH GIELEKII CCHHHHCC >Mature Secondary Structure TKELKVLELFAGVGGFRVGLEHANASLYKTLWSNQWEPGKKSQDAFEVYNYHFPNSENI CCCHHHHHHHHCCCCEEEEHHHCCHHHHHHHHCCCCCCCCCCCCHHHHEEEECCCCCCC NENISEISNEKFKTMNADLIVGGFPCQDYSVARSKKHEMGIEGKKGVLFWDIIRAVENIH CHHHHHHCCHHHEECCCCEEEECCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCC PKYLILENVDRLLKSPSTQRGRDFAIMLASFNKLGYSVEWRVINAAEYGFGQRRRRVYFF CCEEEHHHHHHHHCCCCCCCCCEEEEEEEHHHHCCCEEEEEEEEHHHCCCCCCCCEEEEE VYRNDTPFAKKMDELFETDIESVLVDETKYDEYIFSKGLFARQFPIKQEVYKKRHDYYEL EEECCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHCCCCHHHHHHHHCCCEEC SDDIVNISDNFSGKVWNTGIMRHGRYFTIDTKPLGNEEPIPLKDTLQRDTEIDEKFFITD CCCEEECCCCCCCCEEECHHEECCCEEEEECCCCCCCCCCCHHHHHHCCCCCCCEEEEEC KNKIEKFAYLRGPKKIQRVSASGHEYTYSEGGMSPYENIDLPSRTMLTSEGTVNRSTHFI HHHHHHHHHHCCHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCEEEECCCCCCCCEEEE KTKDNRYRLITPIEAERLQNFDDDWTKIKKLADGSTTQVSDRMRMFFMGNALVTGVIKRI EECCCCEEEEECCCHHHHCCCCHHHHHHHHHCCCCCHHHHHHHEEEHCCHHHHHHHHHHH GIELEKII CCHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2227451 [H]