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The map label for this gene is agaD [H]

Identifier: 116491987

GI number: 116491987

Start: 205685

End: 206485

Strand: Direct

Name: agaD [H]

Synonym: PEPE_0173

Alternate gene names: 116491987

Gene position: 205685-206485 (Clockwise)

Preceding gene: 116491986

Following gene: 116491988

Centisome position: 11.22

GC content: 32.83

Gene sequence:

>801_bases
ATGGCATCTAACGTAGAAAATACTAAGAAAACAAGCAAGTTAAGCAAAAAAGATATTACTATGCTAGGAATTCGCTCTTC
ATTATTACAATCTGCTTTTTCTTATGAACGAATGCAAGCTGGAGGATGGGCTTTTGCCCAAGTTCCTATTTGGAAAAAAA
TTTTTGGTAATGATAAAAAGGCATTGTCTGAAGCCATGTCTGATAATATGGAATTCATCAATACTGCTCCTCCATTAGTA
TCGATTTTAATGGGACTTTTGACTAGTTTAGAAGAAAAAAGAGTTGATCGTCAAACTATCCGAGGATTGAAAAATGGATT
GTTTGGTCCAATGGCTGGTATTGGAGATGCTATTTATTGGTTTACTTTGATGCCGATTGTTGGTGGAATTGCTGCCTCCT
TTGCTTCAAAAGGTAACATTCTAGGACCAATTATCTTTTTCTTAGTCTATCTTGCAATCTTCTTGTGTCGAATCCCATTT
GCACATCTAGGATATAACTTAGGTGTTAAAGCAATTGATGTAATTCAAGATAATTCGAAAATTATAGCTCGTGTAGCTAC
AATTATGGGACTAACTGTTATCGGAGCTTTAATTAGCCAATATGTGGCATTATCACTTAGTGTAAAAATAGGCTCTGTAT
CACTTCAAAAGGATTTCTTGGATAAGATTTTTCCTAATATTTTACCTCTAGGATTTACTTTCTTCTTATACTATTTGTTG
AAGAAAAAAGTATCGCCAATTGTTTTAATTGTAATAGTTTTTGTACTTTGTATTATATGTTCATACTTTAAGATTATGTA
G

Upstream 100 bases:

>100_bases
GTATTTGCTATTATTGAGTTCTTTAGAGATAAAAAGAATAAACAATTACAAGAACAAATTGAAGCTCTTAAGGAAGCTGG
TATAAATGGAGGCGAAGAAG

Downstream 100 bases:

>100_bases
AGGTATTAAAAATGACAAAAATAAATACAATTATTACGGGACATGGTAATTTCGCTTCTGGAATTGGGAGTTCACTTAAA
TTACTATCTGGAGAACATGA

Product: PTS system N-acetylgalactosamine-specific transporter subunit IID

Products: NA

Alternate protein names: EIID-Aga; PTS system N-acetylgalactosamine-specific EIID component [H]

Number of amino acids: Translated: 266; Mature: 265

Protein sequence:

>266_residues
MASNVENTKKTSKLSKKDITMLGIRSSLLQSAFSYERMQAGGWAFAQVPIWKKIFGNDKKALSEAMSDNMEFINTAPPLV
SILMGLLTSLEEKRVDRQTIRGLKNGLFGPMAGIGDAIYWFTLMPIVGGIAASFASKGNILGPIIFFLVYLAIFLCRIPF
AHLGYNLGVKAIDVIQDNSKIIARVATIMGLTVIGALISQYVALSLSVKIGSVSLQKDFLDKIFPNILPLGFTFFLYYLL
KKKVSPIVLIVIVFVLCIICSYFKIM

Sequences:

>Translated_266_residues
MASNVENTKKTSKLSKKDITMLGIRSSLLQSAFSYERMQAGGWAFAQVPIWKKIFGNDKKALSEAMSDNMEFINTAPPLV
SILMGLLTSLEEKRVDRQTIRGLKNGLFGPMAGIGDAIYWFTLMPIVGGIAASFASKGNILGPIIFFLVYLAIFLCRIPF
AHLGYNLGVKAIDVIQDNSKIIARVATIMGLTVIGALISQYVALSLSVKIGSVSLQKDFLDKIFPNILPLGFTFFLYYLL
KKKVSPIVLIVIVFVLCIICSYFKIM
>Mature_265_residues
ASNVENTKKTSKLSKKDITMLGIRSSLLQSAFSYERMQAGGWAFAQVPIWKKIFGNDKKALSEAMSDNMEFINTAPPLVS
ILMGLLTSLEEKRVDRQTIRGLKNGLFGPMAGIGDAIYWFTLMPIVGGIAASFASKGNILGPIIFFLVYLAIFLCRIPFA
HLGYNLGVKAIDVIQDNSKIIARVATIMGLTVIGALISQYVALSLSVKIGSVSLQKDFLDKIFPNILPLGFTFFLYYLLK
KKVSPIVLIVIVFVLCIICSYFKIM

Specific function: The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active -transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane. This system i

COG id: COG3716

COG function: function code G; Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PTS EIID domain [H]

Homologues:

Organism=Escherichia coli, GI1789529, Length=261, Percent_Identity=59.3869731800766, Blast_Score=320, Evalue=5e-89,
Organism=Escherichia coli, GI1788122, Length=279, Percent_Identity=32.9749103942652, Blast_Score=165, Evalue=4e-42,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004704
- InterPro:   IPR018405 [H]

Pfam domain/function: PF03613 EIID-AGA [H]

EC number: NA

Molecular weight: Translated: 29324; Mature: 29192

Theoretical pI: Translated: 10.23; Mature: 10.23

Prosite motif: PS51108 PTS_EIID

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHCCHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
ASNVENTKKTSKLSKKDITMLGIRSSLLQSAFSYERMQAGGWAFAQVPIWKKIFGNDKK
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHCCCHH
ALSEAMSDNMEFINTAPPLVSILMGLLTSLEEKRVDRQTIRGLKNGLFGPMAGIGDAIYW
HHHHHHHCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
FTLMPIVGGIAASFASKGNILGPIIFFLVYLAIFLCRIPFAHLGYNLGVKAIDVIQDNSK
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHCCCCCCCHHHHHHHCCHH
IIARVATIMGLTVIGALISQYVALSLSVKIGSVSLQKDFLDKIFPNILPLGFTFFLYYLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KKKVSPIVLIVIVFVLCIICSYFKIM
HHHCCHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10931310; 9278503; 8932697 [H]