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The map label for this gene is agaB [H]

Identifier: 116491985

GI number: 116491985

Start: 203639

End: 204853

Strand: Direct

Name: agaB [H]

Synonym: PEPE_0171

Alternate gene names: 116491985

Gene position: 203639-204853 (Clockwise)

Preceding gene: 116491984

Following gene: 116491986

Centisome position: 11.11

GC content: 34.73

Gene sequence:

>1215_bases
ATGAAAAGACAGCCGCTCTGGCAATATAAACAAATAAGTGCGGAATTAATTAGAAAAATAGAAAGTGGTGAATTAGTAGT
TAATTCCAAACTTCCGTCAGAAAAACTACTATGCGAACAATATGACGTCAGTAGAATTACCGTTCGTAAAGCGTTAGCAG
AATTAGAAGAGAAACACTACATAACAAGACGCCAAGGCCAAGGTAGTTTTGTTAAAGCACATTTTGAAGATGCAGGTATT
AGTTACATTGATAACAATAGCGAAGATCTGCGTCGATTAGGACACTCAGTTTATATCGAATTACATGAATTTTCGATCTT
AGCCGATGGTGAAGAGACGAAGGTGAGAAGAATCATGCAAATGAATAATAGTGAGTATCTATATCGGGTGAATCAAGTCT
ACATATCAGACCGTAGACCTATTATTCAACGTGAGACGTTTATGTCCTTTGCTGATTTTCCGTTATTAACTTCTGCAGAG
TTACAAAATACGGAATTAATGCCATTACTTGCCAGAAAATTTGATTTAAATTTAAAGCGTTTACATCATGAGATAAGCAC
TGAAGTGGAAGATATACCTTCTAGATTGTATGGAATACCAAATACTTCACCAAGAGAATCTTATATCAAAGCAAAAACTA
CGTATACTAATGAAGAAAATCGTACTGTTTACTTAAGTAATGCTACAACAGCAGCATCTTCTAAAGTATTCTTTGTACGG
CATAAGGAGGAAAATGTTATGTCAGAACCACATATTTTACTTACACGAGTTGATAACCGTTTAGTCCATGGTCAGGTCGG
AGTAACTTGGACTAAAACTTTAGGAGCAAATTTAATTTTAGTAGCAAATGATCAAGCGGCTCAAGATATTTTGCAACAAA
AACTAATGAAAAGTACAGCAGAATCTTCAGGAGCACAGATTAGATTTTTCACCTTACAAAAGACAATTGATGTTATTCAA
AAAGCTGCGGATCGTCAAAAAATTTTTATCGTGGTAAAAACGCCTGAAGATGCCCTAACCTTAATTAAGGGGAATGTGCC
CATTAAAGAATTGAATGTTGGAAATATGCATTTTGCACCTGGAAAAGAAGAGATTACTAAAAAGGTATATGTTGATCAAA
GTGATAAAGACGCCTTAATGGGTGCTGTAAACATGGGAGTTAATGTTTATATACAGGATGTTCCAGATGATCATAAAACC
GAAGTTAACTTTTAA

Upstream 100 bases:

>100_bases
ATTAGAAATTAAATTATATGAAAGCGCTTGCTTATTTTTTATAATGGCCTTATACTATGTTTGTGGTTGTTATATCAATA
TAACAAGTTGGTGATAAGGG

Downstream 100 bases:

>100_bases
TATTTAGTTTATAAAAATACTAAGGGGGATTTGACATGTCGATAACTTTAATACAAGGGCTAATGTTATCAATATTTGCT
GTGATAGCAGGTCTTGATTC

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: EIIB-Aga; PTS system N-acetylgalactosamine-specific EIIB component 1 [H]

Number of amino acids: Translated: 404; Mature: 404

Protein sequence:

>404_residues
MKRQPLWQYKQISAELIRKIESGELVVNSKLPSEKLLCEQYDVSRITVRKALAELEEKHYITRRQGQGSFVKAHFEDAGI
SYIDNNSEDLRRLGHSVYIELHEFSILADGEETKVRRIMQMNNSEYLYRVNQVYISDRRPIIQRETFMSFADFPLLTSAE
LQNTELMPLLARKFDLNLKRLHHEISTEVEDIPSRLYGIPNTSPRESYIKAKTTYTNEENRTVYLSNATTAASSKVFFVR
HKEENVMSEPHILLTRVDNRLVHGQVGVTWTKTLGANLILVANDQAAQDILQQKLMKSTAESSGAQIRFFTLQKTIDVIQ
KAADRQKIFIVVKTPEDALTLIKGNVPIKELNVGNMHFAPGKEEITKKVYVDQSDKDALMGAVNMGVNVYIQDVPDDHKT
EVNF

Sequences:

>Translated_404_residues
MKRQPLWQYKQISAELIRKIESGELVVNSKLPSEKLLCEQYDVSRITVRKALAELEEKHYITRRQGQGSFVKAHFEDAGI
SYIDNNSEDLRRLGHSVYIELHEFSILADGEETKVRRIMQMNNSEYLYRVNQVYISDRRPIIQRETFMSFADFPLLTSAE
LQNTELMPLLARKFDLNLKRLHHEISTEVEDIPSRLYGIPNTSPRESYIKAKTTYTNEENRTVYLSNATTAASSKVFFVR
HKEENVMSEPHILLTRVDNRLVHGQVGVTWTKTLGANLILVANDQAAQDILQQKLMKSTAESSGAQIRFFTLQKTIDVIQ
KAADRQKIFIVVKTPEDALTLIKGNVPIKELNVGNMHFAPGKEEITKKVYVDQSDKDALMGAVNMGVNVYIQDVPDDHKT
EVNF
>Mature_404_residues
MKRQPLWQYKQISAELIRKIESGELVVNSKLPSEKLLCEQYDVSRITVRKALAELEEKHYITRRQGQGSFVKAHFEDAGI
SYIDNNSEDLRRLGHSVYIELHEFSILADGEETKVRRIMQMNNSEYLYRVNQVYISDRRPIIQRETFMSFADFPLLTSAE
LQNTELMPLLARKFDLNLKRLHHEISTEVEDIPSRLYGIPNTSPRESYIKAKTTYTNEENRTVYLSNATTAASSKVFFVR
HKEENVMSEPHILLTRVDNRLVHGQVGVTWTKTLGANLILVANDQAAQDILQQKLMKSTAESSGAQIRFFTLQKTIDVIQ
KAADRQKIFIVVKTPEDALTLIKGNVPIKELNVGNMHFAPGKEEITKKVYVDQSDKDALMGAVNMGVNVYIQDVPDDHKT
EVNF

Specific function: The phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS), a major carbohydrate active -transport system, catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. This

COG id: COG3444

COG function: function code G; Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PTS EIIB type-4 domain [H]

Homologues:

Organism=Escherichia coli, GI1789527, Length=156, Percent_Identity=57.0512820512821, Blast_Score=178, Evalue=7e-46,
Organism=Escherichia coli, GI87082217, Length=146, Percent_Identity=54.1095890410959, Blast_Score=164, Evalue=7e-42,
Organism=Escherichia coli, GI1788120, Length=149, Percent_Identity=30.8724832214765, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1786950, Length=165, Percent_Identity=28.4848484848485, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004720
- InterPro:   IPR018455 [H]

Pfam domain/function: PF03830 PTSIIB_sorb [H]

EC number: =2.7.1.69 [H]

Molecular weight: Translated: 46289; Mature: 46289

Theoretical pI: Translated: 7.43; Mature: 7.43

Prosite motif: PS50949 HTH_GNTR ; PS51101 PTS_EIIB_TYPE_4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRQPLWQYKQISAELIRKIESGELVVNSKLPSEKLLCEQYDVSRITVRKALAELEEKHY
CCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
ITRRQGQGSFVKAHFEDAGISYIDNNSEDLRRLGHSVYIELHEFSILADGEETKVRRIMQ
HHCCCCCCCEEEEEECCCCCEEECCCHHHHHHCCCEEEEEEEEEEEEECCCHHHHHHHHH
MNNSEYLYRVNQVYISDRRPIIQRETFMSFADFPLLTSAELQNTELMPLLARKFDLNLKR
CCCCCEEEEEEEEEECCCCCCHHHHHHHHHCCCCCEECCCCCCCCHHHHHHHHHCCHHHH
LHHEISTEVEDIPSRLYGIPNTSPRESYIKAKTTYTNEENRTVYLSNATTAASSKVFFVR
HHHHHHHHHHHHHHHHCCCCCCCCCHHHEEEEEEEECCCCCEEEEECCCCCCCCEEEEEE
HKEENVMSEPHILLTRVDNRLVHGQVGVTWTKTLGANLILVANDQAAQDILQQKLMKSTA
ECCCCCCCCCCEEEEECCCEEEECCCCEEEECCCCCCEEEEECCHHHHHHHHHHHHHHHH
ESSGAQIRFFTLQKTIDVIQKAADRQKIFIVVKTPEDALTLIKGNVPIKELNVGNMHFAP
HCCCCEEEEEEHHHHHHHHHHCCCCCEEEEEEECCCCCEEEEECCCCEEEECCCCEECCC
GKEEITKKVYVDQSDKDALMGAVNMGVNVYIQDVPDDHKTEVNF
CHHHHHHEEECCCCCCHHHHHHEECCEEEEEEECCCCCCCCCCC
>Mature Secondary Structure
MKRQPLWQYKQISAELIRKIESGELVVNSKLPSEKLLCEQYDVSRITVRKALAELEEKHY
CCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
ITRRQGQGSFVKAHFEDAGISYIDNNSEDLRRLGHSVYIELHEFSILADGEETKVRRIMQ
HHCCCCCCCEEEEEECCCCCEEECCCHHHHHHCCCEEEEEEEEEEEEECCCHHHHHHHHH
MNNSEYLYRVNQVYISDRRPIIQRETFMSFADFPLLTSAELQNTELMPLLARKFDLNLKR
CCCCCEEEEEEEEEECCCCCCHHHHHHHHHCCCCCEECCCCCCCCHHHHHHHHHCCHHHH
LHHEISTEVEDIPSRLYGIPNTSPRESYIKAKTTYTNEENRTVYLSNATTAASSKVFFVR
HHHHHHHHHHHHHHHHCCCCCCCCCHHHEEEEEEEECCCCCEEEEECCCCCCCCEEEEEE
HKEENVMSEPHILLTRVDNRLVHGQVGVTWTKTLGANLILVANDQAAQDILQQKLMKSTA
ECCCCCCCCCCEEEEECCCEEEECCCCEEEECCCCCCEEEEECCHHHHHHHHHHHHHHHH
ESSGAQIRFFTLQKTIDVIQKAADRQKIFIVVKTPEDALTLIKGNVPIKELNVGNMHFAP
HCCCCEEEEEEHHHHHHHHHHCCCCCEEEEEEECCCCCEEEEECCCCEEEECCCCEECCC
GKEEITKKVYVDQSDKDALMGAVNMGVNVYIQDVPDDHKTEVNF
CHHHHHHEEECCCCCCHHHHHHEECCEEEEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10931310; 9278503; 8932697 [H]