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The map label for this gene is cbiD

Identifier: 116332607

GI number: 116332607

Start: 209268

End: 210377

Strand: Direct

Name: cbiD

Synonym: LBJ_4180

Alternate gene names: 116332607

Gene position: 209268-210377 (Clockwise)

Preceding gene: 116332606

Following gene: 116332608

Centisome position: 69.81

GC content: 45.86

Gene sequence:

>1110_bases
ATGTCTACGAAAGAGTTAAGAGAAGGATTTACGACAGGGGCTTGTTCCGCTGCTGCTGCAAAGGCTGCGACTCGTCTTCT
CCTAAAGGGAGAACCCGTTTTGGAAATCGAAACAACTCTTCCGAACGACAGACAAGTCCTTTTTCCTGTCAAACGCTGTC
AACTCGAAGGAGAAGTCGCAATTTGTAGCGTCGTCAAAGACGCCGGAGATGATCCGGATTGTACACACGGAGCGGAACTT
ACAGCGCGAGTTCGCTTAACAAAAGAGAGCAAAATCGTCTTAAAAGGCGGAGACGGAGTCGCCACCGTCACAAAGACGGG
ACTCGGTATAGAAGTGGGAGAACCCGCGATCAATCCGATCCCTAGAAAAAACATCAGCGAGATGATCTTGGAGGAATTGA
AAGGGAGTTCATTCAACGGCGCGGAAGTGGAGATCAGCGTTCCGGGCGGTCAAGAAATGGCAAAAAAAACGATGAACAAA
CGTCTCGGCCTAATCGGAGGAATTTCCATCATAGGAACCACCGGTATCGTCAAGCCGTTTTCCACAGCCGCATTTAAAGC
GAGCGTTATCCAAGCGATTCGTATGGCAAGAGAATACGAAGTTGATACCGTCATTCTCACGACGGGCGGAAAATCCGAAA
AGTTTGCTATGAATCTATTTCCGAATCTGAAAGAACTTTCTTTTATTCAAGCCGGAGATTTTATCGGGACAGGAATTAAA
ACCTCCGTTAAGGAATTTATACGTCATGTGATCGTCGTTGGTATGATCGGGAAGTTATCCAAGATGGCCGACGGCGTAAT
GATGACTCATAGGGGCGGTTCTTCCGTGAACACTAAAATGTTATCAGATATCGCAAGATCCGTGGGAATCCCCGAACCAA
TTGCGATCGATATCCAAAACGCAAATACCGCAAGACATGCATTAGAAATTTGTAAAGAAAACGGATACGAAATTATCACG
ACCAAAATCTGCGAAATCGTCGCGAGAAACTGCTCTAAACACGCGGGAACGAATATGTCGATTTCCTGTTATATGGTGGA
CTTTGACGGAACACTCTTGGGCAAATTCGAAAATTTCTCGCAAAAATCGAAACTACGAAAGGGAATTTGA

Upstream 100 bases:

>100_bases
CTAATGCGAGGTATGAACGAAGAAGACATTGGCATGGAAACGTTCTTCAACTCCATTGGAAGATCGGAGAATTAACCTAA
CGGCCATCAGACGATTTACT

Downstream 100 bases:

>100_bases
CACATGAATGATATGAGGCAAATGACGTTCCTCGGCAGAGAAATCGAAGACAAATCCTTTTCGATCATAGACGAAGAAGC
GGGTCCACATCCTTTTTCCA

Product: cobalt-precorrin-6A synthase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 369; Mature: 368

Protein sequence:

>369_residues
MSTKELREGFTTGACSAAAAKAATRLLLKGEPVLEIETTLPNDRQVLFPVKRCQLEGEVAICSVVKDAGDDPDCTHGAEL
TARVRLTKESKIVLKGGDGVATVTKTGLGIEVGEPAINPIPRKNISEMILEELKGSSFNGAEVEISVPGGQEMAKKTMNK
RLGLIGGISIIGTTGIVKPFSTAAFKASVIQAIRMAREYEVDTVILTTGGKSEKFAMNLFPNLKELSFIQAGDFIGTGIK
TSVKEFIRHVIVVGMIGKLSKMADGVMMTHRGGSSVNTKMLSDIARSVGIPEPIAIDIQNANTARHALEICKENGYEIIT
TKICEIVARNCSKHAGTNMSISCYMVDFDGTLLGKFENFSQKSKLRKGI

Sequences:

>Translated_369_residues
MSTKELREGFTTGACSAAAAKAATRLLLKGEPVLEIETTLPNDRQVLFPVKRCQLEGEVAICSVVKDAGDDPDCTHGAEL
TARVRLTKESKIVLKGGDGVATVTKTGLGIEVGEPAINPIPRKNISEMILEELKGSSFNGAEVEISVPGGQEMAKKTMNK
RLGLIGGISIIGTTGIVKPFSTAAFKASVIQAIRMAREYEVDTVILTTGGKSEKFAMNLFPNLKELSFIQAGDFIGTGIK
TSVKEFIRHVIVVGMIGKLSKMADGVMMTHRGGSSVNTKMLSDIARSVGIPEPIAIDIQNANTARHALEICKENGYEIIT
TKICEIVARNCSKHAGTNMSISCYMVDFDGTLLGKFENFSQKSKLRKGI
>Mature_368_residues
STKELREGFTTGACSAAAAKAATRLLLKGEPVLEIETTLPNDRQVLFPVKRCQLEGEVAICSVVKDAGDDPDCTHGAELT
ARVRLTKESKIVLKGGDGVATVTKTGLGIEVGEPAINPIPRKNISEMILEELKGSSFNGAEVEISVPGGQEMAKKTMNKR
LGLIGGISIIGTTGIVKPFSTAAFKASVIQAIRMAREYEVDTVILTTGGKSEKFAMNLFPNLKELSFIQAGDFIGTGIKT
SVKEFIRHVIVVGMIGKLSKMADGVMMTHRGGSSVNTKMLSDIARSVGIPEPIAIDIQNANTARHALEICKENGYEIITT
KICEIVARNCSKHAGTNMSISCYMVDFDGTLLGKFENFSQKSKLRKGI

Specific function: May catalyze the methylation of C-1 in cobalt-precorrin- 5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A

COG id: COG1903

COG function: function code H; Cobalamin biosynthesis protein CbiD

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CbiD family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CBID_LEPBJ (Q04NF4)

Other databases:

- EMBL:   CP000351
- RefSeq:   YP_802324.1
- ProteinModelPortal:   Q04NF4
- SMR:   Q04NF4
- STRING:   Q04NF4
- GeneID:   4412250
- GenomeReviews:   CP000351_GR
- KEGG:   lbj:LBJ_4180
- eggNOG:   COG1903
- HOGENOM:   HBG705387
- OMA:   RRGWTTG
- ProtClustDB:   PRK00075
- BioCyc:   LBOR355277:LBJ_4180-MONOMER
- HAMAP:   MF_00787
- InterPro:   IPR002748
- PIRSF:   PIRSF026782
- TIGRFAMs:   TIGR00312

Pfam domain/function: PF01888 CbiD; SSF111342 Cbl_biosynth_CbiD

EC number: NA

Molecular weight: Translated: 39526; Mature: 39394

Theoretical pI: Translated: 8.74; Mature: 8.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTKELREGFTTGACSAAAAKAATRLLLKGEPVLEIETTLPNDRQVLFPVKRCQLEGEVA
CCHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCEEEEEHHHCCCCCCEE
ICSVVKDAGDDPDCTHGAELTARVRLTKESKIVLKGGDGVATVTKTGLGIEVGEPAINPI
EEEHHHHCCCCCCCCCCCCEEEEEEEECCCEEEEECCCCEEEEEECCCCEEECCCCCCCC
PRKNISEMILEELKGSSFNGAEVEISVPGGQEMAKKTMNKRLGLIGGISIIGTTGIVKPF
CCCCHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHCCHHCCHHEEECCCCCCCC
STAAFKASVIQAIRMAREYEVDTVILTTGGKSEKFAMNLFPNLKELSFIQAGDFIGTGIK
HHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCCCHHHHHHHHCCCCCCCCHH
TSVKEFIRHVIVVGMIGKLSKMADGVMMTHRGGSSVNTKMLSDIARSVGIPEPIAIDIQN
HHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEEC
ANTARHALEICKENGYEIITTKICEIVARNCSKHAGTNMSISCYMVDFDGTLLGKFENFS
CCHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCEEEECHHHHH
QKSKLRKGI
HHHHHHCCC
>Mature Secondary Structure 
STKELREGFTTGACSAAAAKAATRLLLKGEPVLEIETTLPNDRQVLFPVKRCQLEGEVA
CHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCEEEEEHHHCCCCCCEE
ICSVVKDAGDDPDCTHGAELTARVRLTKESKIVLKGGDGVATVTKTGLGIEVGEPAINPI
EEEHHHHCCCCCCCCCCCCEEEEEEEECCCEEEEECCCCEEEEEECCCCEEECCCCCCCC
PRKNISEMILEELKGSSFNGAEVEISVPGGQEMAKKTMNKRLGLIGGISIIGTTGIVKPF
CCCCHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHCCHHCCHHEEECCCCCCCC
STAAFKASVIQAIRMAREYEVDTVILTTGGKSEKFAMNLFPNLKELSFIQAGDFIGTGIK
HHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCCCHHHHHHHHCCCCCCCCHH
TSVKEFIRHVIVVGMIGKLSKMADGVMMTHRGGSSVNTKMLSDIARSVGIPEPIAIDIQN
HHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEEC
ANTARHALEICKENGYEIITTKICEIVARNCSKHAGTNMSISCYMVDFDGTLLGKFENFS
CCHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCEEEECHHHHH
QKSKLRKGI
HHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA