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The map label for this gene is exbD [H]

Identifier: 116332552

GI number: 116332552

Start: 136895

End: 137299

Strand: Reverse

Name: exbD [H]

Synonym: LBJ_4118

Alternate gene names: 116332552

Gene position: 137299-136895 (Counterclockwise)

Preceding gene: 116332553

Following gene: 116332551

Centisome position: 45.8

GC content: 42.47

Gene sequence:

>405_bases
ATGGCAGGTTCTGCTCCCTCCGGCGACGGAGAAGAAATAGGTAATATTAATATCACTCCGATGGTGGATGTGATTCTAGT
TCTTTTAGTGATCTTTATGGTGACCGCTAACTTCTTAAAAAAAGAATCCATCAACATCAATCTTCCCAAGGTTGCGGCGG
CAGATCCGAACGTAGCTCAATCGGTTCAAGTCGCTTTGACCAAGGACGGAAAAATTCTGATAGAAGGAGCGGAAGCTTCT
ATAGAAAAACTACAAGCTCAACTTGAAAGAGATTCTAAAATTAAACCGAATATGCGTCTGACTCTTTCAGCCGACTCTTC
TCTTTCGTATGGGAAAATCGCGGAAACGATGGGAGTGATTCGTAAAGCTGGAGTTACTAGAATTGCGCTTTCGGTAAAAC
GTTAA

Upstream 100 bases:

>100_bases
CGTAAATTAAAGGTCATTCAGGCAAATTTGGAAATTCTTTCCAAAGAGTTTCTTGCAAGTCTTTCCCGTAAGAAATAAAC
TTATAAGGAGAAGGTAAAAC

Downstream 100 bases:

>100_bases
GGGAAACGGGACAGTAGAATGGTAAGCGTTTCTGAAATTAAACAAAAGATCATTCGATTCGGCTTGTTCCGATTTTGCCT
GATCGCGTCTTTTACTTTGC

Product: ExbD-related biopolymer transport protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 134; Mature: 133

Protein sequence:

>134_residues
MAGSAPSGDGEEIGNINITPMVDVILVLLVIFMVTANFLKKESININLPKVAAADPNVAQSVQVALTKDGKILIEGAEAS
IEKLQAQLERDSKIKPNMRLTLSADSSLSYGKIAETMGVIRKAGVTRIALSVKR

Sequences:

>Translated_134_residues
MAGSAPSGDGEEIGNINITPMVDVILVLLVIFMVTANFLKKESININLPKVAAADPNVAQSVQVALTKDGKILIEGAEAS
IEKLQAQLERDSKIKPNMRLTLSADSSLSYGKIAETMGVIRKAGVTRIALSVKR
>Mature_133_residues
AGSAPSGDGEEIGNINITPMVDVILVLLVIFMVTANFLKKESININLPKVAAADPNVAQSVQVALTKDGKILIEGAEASI
EKLQAQLERDSKIKPNMRLTLSADSSLSYGKIAETMGVIRKAGVTRIALSVKR

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

Organism=Escherichia coli, GI1789380, Length=123, Percent_Identity=29.2682926829268, Blast_Score=60, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 14232; Mature: 14101

Theoretical pI: Translated: 9.69; Mature: 9.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGSAPSGDGEEIGNINITPMVDVILVLLVIFMVTANFLKKESININLPKVAAADPNVAQ
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHH
SVQVALTKDGKILIEGAEASIEKLQAQLERDSKIKPNMRLTLSADSSLSYGKIAETMGVI
HEEEEEECCCEEEEECCHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHH
RKAGVTRIALSVKR
HHCCCEEEEEEECC
>Mature Secondary Structure 
AGSAPSGDGEEIGNINITPMVDVILVLLVIFMVTANFLKKESININLPKVAAADPNVAQ
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHH
SVQVALTKDGKILIEGAEASIEKLQAQLERDSKIKPNMRLTLSADSSLSYGKIAETMGVI
HEEEEEECCCEEEEECCHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHH
RKAGVTRIALSVKR
HHCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9781885; 10952301 [H]