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The map label for this gene is ompA [C]

Identifier: 116329456

GI number: 116329456

Start: 3476471

End: 3477058

Strand: Direct

Name: ompA [C]

Synonym: LBL_2925

Alternate gene names: 116329456

Gene position: 3476471-3477058 (Clockwise)

Preceding gene: 116329454

Following gene: 116329458

Centisome position: 96.18

GC content: 45.58

Gene sequence:

>588_bases
ATGGTCAAAAAAATTTTGAATCTGATTCTGCTCGGTGCAATTGCATTTTCATTCACTCTTTGCTCCTCTGCTGAAAAAAA
AGAGGAATCTGCAGCTCCTGAGCCGTCAGCCCAAGAGCAATCCGCTGCTGCAAATAGAAGTGTCGACGTTAACTCTCCGG
AAGCGATTGCCGATTCCTTAAACGAAAAATTGAAAGACTTTAGATATCCCGATGGAATAACTCGCCCAGGATTCAGCTAC
AAAAAAGCGGATGTCAATCCGGGTGATTTCAGTGGATGGTCTAAGGTAAACGTTCCAGTGATCAAAGAAGGTCTTGGAAA
ACTTCCCGATAGCTACGCTCTTGAAATTACCGGACACACCGATGCCGTCGGACCCGAGCAAGCTGAAGGAGCTAAAAAGG
GAAATATTTTCTATTCCGAACTTCGTGCAAATGCCGTTAAACAGGCTTTGATCAAACAAGGAATCCCCGCAAATCGTATT
ATTGCGAAAGGCGCCGGCTCCTCAGAACCTGTTTCCGGACTCGATGCCAAAGACGCTAAAAACAGAAGGGTCACTTTCCG
TTTTGCGACTTCCGCTCCACAACAATAA

Upstream 100 bases:

>100_bases
GTTTTTAGCATTCTAAAAAAAAGTTTCCATTTTACTTCCTAAACCTTAGTGTGACACATTGAAACCAAAACCCCTTAAGA
TTCTAAGGAAGGAAAGAAAC

Downstream 100 bases:

>100_bases
TTCCAAATAAATTTCCCTGATACTGTTTTTCATCAATTACGGTATCAGGGATAAAAATATCTAATCTACTTCATGTCTTC
TTCGATTATTATTTTCATAC

Product: OmpA-family lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 195; Mature: 195

Protein sequence:

>195_residues
MVKKILNLILLGAIAFSFTLCSSAEKKEESAAPEPSAQEQSAAANRSVDVNSPEAIADSLNEKLKDFRYPDGITRPGFSY
KKADVNPGDFSGWSKVNVPVIKEGLGKLPDSYALEITGHTDAVGPEQAEGAKKGNIFYSELRANAVKQALIKQGIPANRI
IAKGAGSSEPVSGLDAKDAKNRRVTFRFATSAPQQ

Sequences:

>Translated_195_residues
MVKKILNLILLGAIAFSFTLCSSAEKKEESAAPEPSAQEQSAAANRSVDVNSPEAIADSLNEKLKDFRYPDGITRPGFSY
KKADVNPGDFSGWSKVNVPVIKEGLGKLPDSYALEITGHTDAVGPEQAEGAKKGNIFYSELRANAVKQALIKQGIPANRI
IAKGAGSSEPVSGLDAKDAKNRRVTFRFATSAPQQ
>Mature_195_residues
MVKKILNLILLGAIAFSFTLCSSAEKKEESAAPEPSAQEQSAAANRSVDVNSPEAIADSLNEKLKDFRYPDGITRPGFSY
KKADVNPGDFSGWSKVNVPVIKEGLGKLPDSYALEITGHTDAVGPEQAEGAKKGNIFYSELRANAVKQALIKQGIPANRI
IAKGAGSSEPVSGLDAKDAKNRRVTFRFATSAPQQ

Specific function: Required For The Action Of Colicins K And L And For The Stabilization Of Mating Aggregates In Conjugation. Serves As A Receptor For A Number Of T-Even Like Phages. Also Acts As A Porin With Low Permeability That Allows Slow Penetration Of Small Solutes.

COG id: COG1360

COG function: function code N; Flagellar motor protein

Gene ontology:

Cell location: Integral Membrane Protein. Outer Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 140 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 2300 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 3380 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1480 Molecules/Cell In: Growth Phase, Mi

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20793; Mature: 20793

Theoretical pI: Translated: 9.37; Mature: 9.37

Prosite motif: PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVKKILNLILLGAIAFSFTLCSSAEKKEESAAPEPSAQEQSAAANRSVDVNSPEAIADSL
CHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCCHHHHHHHCCCCCCCCHHHHHHHH
NEKLKDFRYPDGITRPGFSYKKADVNPGDFSGWSKVNVPVIKEGLGKLPDSYALEITGHT
HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEEECCCC
DAVGPEQAEGAKKGNIFYSELRANAVKQALIKQGIPANRIIAKGAGSSEPVSGLDAKDAK
CCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHEEECCCCCCCCCCCCCCCCCC
NRRVTFRFATSAPQQ
CCEEEEEECCCCCCC
>Mature Secondary Structure
MVKKILNLILLGAIAFSFTLCSSAEKKEESAAPEPSAQEQSAAANRSVDVNSPEAIADSL
CHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCCHHHHHHHCCCCCCCCHHHHHHHH
NEKLKDFRYPDGITRPGFSYKKADVNPGDFSGWSKVNVPVIKEGLGKLPDSYALEITGHT
HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEEECCCC
DAVGPEQAEGAKKGNIFYSELRANAVKQALIKQGIPANRIIAKGAGSSEPVSGLDAKDAK
CCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHEEECCCCCCCCCCCCCCCCCC
NRRVTFRFATSAPQQ
CCEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA