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The map label for this gene is yafV [H]

Identifier: 116329454

GI number: 116329454

Start: 3474587

End: 3475429

Strand: Direct

Name: yafV [H]

Synonym: LBL_2923

Alternate gene names: 116329454

Gene position: 3474587-3475429 (Clockwise)

Preceding gene: 116329453

Following gene: 116329456

Centisome position: 96.13

GC content: 42.7

Gene sequence:

>843_bases
TTGAACCTAGGTGAACTGAATATTGCTCTTGTACAATGTGATCTTTCCTGGGAAAACCGGGAAACAAACTACGAACACGT
TCGCGAACTTATCCATTCCGCCCTTGAAAAACAGACGGACAAAAATCCTGATTTGATTTTGCTTCCGGAAACTTTTGCGA
CCGGATTTACGATGAGATCGGAAAGAACCGCGGAACCGGACGAAGGTCCGACCGAAACGTTCTTAAAGGAAATAGCAAAA
GACGCCAAAACAACGATCTGCGGCGGTTGGATTCAAAAAAACCCGAAAGGAAAGCCCTTTAATACGGTAAGTGTTGTAAA
TCCAAAAGGAGAAATCATATTACGTTACTCTAAAATTCATCCATTTACTTTCGGAGGTGAAGATCGACATTACAGTTCCG
GTTCGGAAATCGTCAGTTATGATCTCAACGGTTTTAGGATTACCCCTTTTATCTGCTACGATATTCGTTTTCCGGAAATT
TTTCGAAGACTTGCGGGAGAAACGGATATTTTTACCGTTCACGCAAACTGGCCGACTCCGAGAATCCATCACTGGGAATT
GATCCTAAAAACAAGGGCGATCGAAAATCAGGCTTACGTTTTCGGAATCAATCGGATCGGAATCGCCGGGCATAATAAAA
GTATTCATCACAACGGCCATTCTCTCGCTGTAGCACCTAATGGAGATTTTATGGACGTCGGCGAAGGAATAGAAACCGTT
CTATTCTACAATGCTCGTAAAAGATTAATTCTGGATTATAGGGAGAATTTCCCGGTTCTCTCCGATCGTAAGGACCAAAG
TTTGATCCGAGTCAGAACAGTGGAGCATTCTTCTCAAATCTAA

Upstream 100 bases:

>100_bases
GATCCGCCCGAAATACCATCGAGTTTCGAAAAAATCAATCCGAAACGTTTCTTCGGAAGAATGAAGACGATATGAAATTG
TTCGAGGAGGAAAAACAAAA

Downstream 100 bases:

>100_bases
GAAACCTTTCACTGAGCGCAAGAGTCGCTTCGATCATCTCCCCCGTAAACGGGTCTTTAAATTTAAGATAATAAGATAAA
AGTTGCAATCCGTACGATTC

Product: amidohydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 280; Mature: 280

Protein sequence:

>280_residues
MNLGELNIALVQCDLSWENRETNYEHVRELIHSALEKQTDKNPDLILLPETFATGFTMRSERTAEPDEGPTETFLKEIAK
DAKTTICGGWIQKNPKGKPFNTVSVVNPKGEIILRYSKIHPFTFGGEDRHYSSGSEIVSYDLNGFRITPFICYDIRFPEI
FRRLAGETDIFTVHANWPTPRIHHWELILKTRAIENQAYVFGINRIGIAGHNKSIHHNGHSLAVAPNGDFMDVGEGIETV
LFYNARKRLILDYRENFPVLSDRKDQSLIRVRTVEHSSQI

Sequences:

>Translated_280_residues
MNLGELNIALVQCDLSWENRETNYEHVRELIHSALEKQTDKNPDLILLPETFATGFTMRSERTAEPDEGPTETFLKEIAK
DAKTTICGGWIQKNPKGKPFNTVSVVNPKGEIILRYSKIHPFTFGGEDRHYSSGSEIVSYDLNGFRITPFICYDIRFPEI
FRRLAGETDIFTVHANWPTPRIHHWELILKTRAIENQAYVFGINRIGIAGHNKSIHHNGHSLAVAPNGDFMDVGEGIETV
LFYNARKRLILDYRENFPVLSDRKDQSLIRVRTVEHSSQI
>Mature_280_residues
MNLGELNIALVQCDLSWENRETNYEHVRELIHSALEKQTDKNPDLILLPETFATGFTMRSERTAEPDEGPTETFLKEIAK
DAKTTICGGWIQKNPKGKPFNTVSVVNPKGEIILRYSKIHPFTFGGEDRHYSSGSEIVSYDLNGFRITPFICYDIRFPEI
FRRLAGETDIFTVHANWPTPRIHHWELILKTRAIENQAYVFGINRIGIAGHNKSIHHNGHSLAVAPNGDFMDVGEGIETV
LFYNARKRLILDYRENFPVLSDRKDQSLIRVRTVEHSSQI

Specific function: Unknown

COG id: COG0388

COG function: function code R; Predicted amidohydrolase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CN hydrolase domain [H]

Homologues:

Organism=Homo sapiens, GI9910460, Length=274, Percent_Identity=26.6423357664234, Blast_Score=89, Evalue=3e-18,
Organism=Escherichia coli, GI1786412, Length=258, Percent_Identity=32.5581395348837, Blast_Score=132, Evalue=2e-32,
Organism=Caenorhabditis elegans, GI17556280, Length=268, Percent_Identity=27.2388059701493, Blast_Score=77, Evalue=8e-15,
Organism=Saccharomyces cerevisiae, GI6323383, Length=278, Percent_Identity=28.0575539568345, Blast_Score=92, Evalue=6e-20,
Organism=Drosophila melanogaster, GI17933642, Length=228, Percent_Identity=28.5087719298246, Blast_Score=82, Evalue=4e-16,
Organism=Drosophila melanogaster, GI21355835, Length=274, Percent_Identity=25.9124087591241, Blast_Score=80, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003010
- InterPro:   IPR001110 [H]

Pfam domain/function: PF00795 CN_hydrolase [H]

EC number: 3.5.-.- [C]

Molecular weight: Translated: 32049; Mature: 32049

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: PS50263 CN_HYDROLASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLGELNIALVQCDLSWENRETNYEHVRELIHSALEKQTDKNPDLILLPETFATGFTMRS
CCCCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCHHCCCEEECC
ERTAEPDEGPTETFLKEIAKDAKTTICGGWIQKNPKGKPFNTVSVVNPKGEIILRYSKIH
CCCCCCCCCCHHHHHHHHHHHHCCEEECCHHCCCCCCCCCCEEEEECCCCCEEEEEECCC
PFTFGGEDRHYSSGSEIVSYDLNGFRITPFICYDIRFPEIFRRLAGETDIFTVHANWPTP
CEEECCCCCCCCCCCCEEEEECCCEEEEEEEEEECCCHHHHHHHCCCCEEEEEECCCCCC
RIHHWELILKTRAIENQAYVFGINRIGIAGHNKSIHHNGHSLAVAPNGDFMDVGEGIETV
CEEEEEEEEEEHEECCCEEEEEEEEEEEECCCCCEEECCCEEEEECCCCEEECCCCCEEE
LFYNARKRLILDYRENFPVLSDRKDQSLIRVRTVEHSSQI
EEECCCCEEEEEECCCCCCCCCCCCCCEEEEEEECCCCCC
>Mature Secondary Structure
MNLGELNIALVQCDLSWENRETNYEHVRELIHSALEKQTDKNPDLILLPETFATGFTMRS
CCCCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCHHCCCEEECC
ERTAEPDEGPTETFLKEIAKDAKTTICGGWIQKNPKGKPFNTVSVVNPKGEIILRYSKIH
CCCCCCCCCCHHHHHHHHHHHHCCEEECCHHCCCCCCCCCCEEEEECCCCCEEEEEECCC
PFTFGGEDRHYSSGSEIVSYDLNGFRITPFICYDIRFPEIFRRLAGETDIFTVHANWPTP
CEEECCCCCCCCCCCCEEEEECCCEEEEEEEEEECCCHHHHHHHCCCCEEEEEECCCCCC
RIHHWELILKTRAIENQAYVFGINRIGIAGHNKSIHHNGHSLAVAPNGDFMDVGEGIETV
CEEEEEEEEEEHEECCCEEEEEEEEEEEECCCCCEEECCCEEEEECCCCEEECCCCCEEE
LFYNARKRLILDYRENFPVLSDRKDQSLIRVRTVEHSSQI
EEECCCCEEEEEECCCCCCCCCCCCCCEEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]