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The map label for this gene is choB [H]

Identifier: 116329355

GI number: 116329355

Start: 3330490

End: 3332214

Strand: Direct

Name: choB [H]

Synonym: LBL_2806

Alternate gene names: 116329355

Gene position: 3330490-3332214 (Clockwise)

Preceding gene: 116329354

Following gene: 116329356

Centisome position: 92.14

GC content: 43.71

Gene sequence:

>1725_bases
ATGAAAAAATACGAAGCGGTTGTGATTGGTACCGGATTCGGCGGGGCCGTAAACGGATGTAGACTGAGCAAAAAGTGGCC
GGGCCGGGTTTTGATTTTGGAACGTGGAAAACGTTACCCCAAAGGTTCCTTTCCCCGTTCTCCCCACGATATGTCCAAAA
ATTTTTGGAACGTTCCCGAAGAGGATAGTTCCAAAACTCGTCCAAAAAAACTTTCCAAATTGAATCAAACTGGTTTATTC
GACATTCGAAACTACAAAAACATGGACGTAGTTATTTCCGCAGGACTCGGCGGCGGATCTTTGATTTACGCGAACGTTTT
CCTGGAACCCCCGGATCACATCTTCGACGAACGCTGGCCTGCGAATGTGAAAAAGAAAAGCCTAACTTCATATTATAAAA
TCGTTAAAGAGATTTTGGGTTCCAGGCCAATTCCGACAAATAACGATCCTCGAAGAAAAATCGTTCGAACCGAACTCTAT
CAAAAATTTGCGAAGTCCGTCGGCCGAGAATCCAAACTCGCGGATATCAACGTGTTTTTCGGAAACGATTTTAAGAAACC
GATACCGATAGGGCTTCAGGAAAAAAATCGTTACGGAGCCGTCCAAACCTCCTGCACGTATTGTGCGGAATGTGATATCG
GATGTAATACACATTCCAAAAACACTTTGGATCTAAATTACCTTTTTGTGGCGGAAAATAAATATAAGGCGGACGTAAGA
ACCGAACATCTAGTTCAAAAGATCGTTCCTCTCGGACCGGATGGAAGCGACAATTCTTCTTATCACGGTGAAAACGGTTA
TCGAATTTATTTTAGGGATCTTTCCGCACATTCCAGGGATTTGATTTCCGTCATCACAAAACGAGTCGTAGTTTCCGCGG
GAACATTAGGAAGTACTGAACTTCTTTTAAGATGTAAGGAGGAATTCAAAACCCTTCCCGATATATCAAATCACCTGGGA
AAACAATTCTCTGGCAACGGCGACTTTTTATCCTTTGCCATTAAAGGGAAAGAACCTGCAAATCCGAACTACGGCCCGGT
AATTACACAATATACGGACTATAACTTGTTCAAAAGTTATGATCCTAAAAAAGCTTTTATTCTTCAAGACGCCAGTTATC
CCGTCTTTGCTTCTTACTTTGCCGAGGCGTCCGTTCCCTGGTTTTTAAGAATCGGGTTTTTCTTTCATATGCTCGGAGAA
CTTTTCAAAAAATTTTTAAACGGTAAAATTTTCGGTAAGGTCGGTTACCTAATGAGCGAATTAATGAAAGGCGACCTTTC
TTACACTTCGGCGGTATTGTTGTGTATGGGAATCGATCGCGCGGATGGTGAAATGATTTTGGATCGTAAAAGAAGTTTTG
AGATTCAATGGCCTCAAAAGAACAGTATGTCGCTTTATGAAGCGATTCTCGGCGTGATGAAAGCCTTTGCTTCGTTTATC
AAAACGGATTTTTACTTTCCGCTCCCGACCTGGTCCTGGCCGGTTCGCAATAACGTCTCCGTACATCCGTTAGGCGGCTG
TATCCTCGGAAATTCGATAACTCACGCGGTAACTTCTGCGGATTCAAAAACTTTCGGGCAGGTTTTTTCCTACCAAGGGC
TTTATGTGGCCGATGGAAGTCTTTCCCCGACCGCAATCGGCGCAAACCCATCTATGACGATCGCCGCTCTTGCCGAAAAA
ATCGCGGAAGGAATTACGGGAATAAAACCGACGGCGAATCTCTGA

Upstream 100 bases:

>100_bases
GTTTGTCTCTTTTTTGGGAGCCCTGCTCATCGGCATCTATCTCTTAAATCGTCTTGAATTTAGTTTATTTTAATACACGA
ATATACTCTTTGGGGTTGTA

Downstream 100 bases:

>100_bases
TAAAAAATACGTTATTGCAAGTATGAAGACGAGTTCAGTCAAAAATTCCTATCTAAACAAGCTTGCAGAATTAAACACAG
GAAAATAATATTCGTTTTTA

Product: flavoprotein

Products: NA

Alternate protein names: CHOD [H]

Number of amino acids: Translated: 574; Mature: 574

Protein sequence:

>574_residues
MKKYEAVVIGTGFGGAVNGCRLSKKWPGRVLILERGKRYPKGSFPRSPHDMSKNFWNVPEEDSSKTRPKKLSKLNQTGLF
DIRNYKNMDVVISAGLGGGSLIYANVFLEPPDHIFDERWPANVKKKSLTSYYKIVKEILGSRPIPTNNDPRRKIVRTELY
QKFAKSVGRESKLADINVFFGNDFKKPIPIGLQEKNRYGAVQTSCTYCAECDIGCNTHSKNTLDLNYLFVAENKYKADVR
TEHLVQKIVPLGPDGSDNSSYHGENGYRIYFRDLSAHSRDLISVITKRVVVSAGTLGSTELLLRCKEEFKTLPDISNHLG
KQFSGNGDFLSFAIKGKEPANPNYGPVITQYTDYNLFKSYDPKKAFILQDASYPVFASYFAEASVPWFLRIGFFFHMLGE
LFKKFLNGKIFGKVGYLMSELMKGDLSYTSAVLLCMGIDRADGEMILDRKRSFEIQWPQKNSMSLYEAILGVMKAFASFI
KTDFYFPLPTWSWPVRNNVSVHPLGGCILGNSITHAVTSADSKTFGQVFSYQGLYVADGSLSPTAIGANPSMTIAALAEK
IAEGITGIKPTANL

Sequences:

>Translated_574_residues
MKKYEAVVIGTGFGGAVNGCRLSKKWPGRVLILERGKRYPKGSFPRSPHDMSKNFWNVPEEDSSKTRPKKLSKLNQTGLF
DIRNYKNMDVVISAGLGGGSLIYANVFLEPPDHIFDERWPANVKKKSLTSYYKIVKEILGSRPIPTNNDPRRKIVRTELY
QKFAKSVGRESKLADINVFFGNDFKKPIPIGLQEKNRYGAVQTSCTYCAECDIGCNTHSKNTLDLNYLFVAENKYKADVR
TEHLVQKIVPLGPDGSDNSSYHGENGYRIYFRDLSAHSRDLISVITKRVVVSAGTLGSTELLLRCKEEFKTLPDISNHLG
KQFSGNGDFLSFAIKGKEPANPNYGPVITQYTDYNLFKSYDPKKAFILQDASYPVFASYFAEASVPWFLRIGFFFHMLGE
LFKKFLNGKIFGKVGYLMSELMKGDLSYTSAVLLCMGIDRADGEMILDRKRSFEIQWPQKNSMSLYEAILGVMKAFASFI
KTDFYFPLPTWSWPVRNNVSVHPLGGCILGNSITHAVTSADSKTFGQVFSYQGLYVADGSLSPTAIGANPSMTIAALAEK
IAEGITGIKPTANL
>Mature_574_residues
MKKYEAVVIGTGFGGAVNGCRLSKKWPGRVLILERGKRYPKGSFPRSPHDMSKNFWNVPEEDSSKTRPKKLSKLNQTGLF
DIRNYKNMDVVISAGLGGGSLIYANVFLEPPDHIFDERWPANVKKKSLTSYYKIVKEILGSRPIPTNNDPRRKIVRTELY
QKFAKSVGRESKLADINVFFGNDFKKPIPIGLQEKNRYGAVQTSCTYCAECDIGCNTHSKNTLDLNYLFVAENKYKADVR
TEHLVQKIVPLGPDGSDNSSYHGENGYRIYFRDLSAHSRDLISVITKRVVVSAGTLGSTELLLRCKEEFKTLPDISNHLG
KQFSGNGDFLSFAIKGKEPANPNYGPVITQYTDYNLFKSYDPKKAFILQDASYPVFASYFAEASVPWFLRIGFFFHMLGE
LFKKFLNGKIFGKVGYLMSELMKGDLSYTSAVLLCMGIDRADGEMILDRKRSFEIQWPQKNSMSLYEAILGVMKAFASFI
KTDFYFPLPTWSWPVRNNVSVHPLGGCILGNSITHAVTSADSKTFGQVFSYQGLYVADGSLSPTAIGANPSMTIAALAEK
IAEGITGIKPTANL

Specific function: Unknown

COG id: COG2303

COG function: function code E; Choline dehydrogenase and related flavoproteins

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GMC oxidoreductase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000172
- InterPro:   IPR007867
- InterPro:   IPR006311 [H]

Pfam domain/function: PF05199 GMC_oxred_C; PF00732 GMC_oxred_N [H]

EC number: =1.1.3.6 [H]

Molecular weight: Translated: 64096; Mature: 64096

Theoretical pI: Translated: 9.72; Mature: 9.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKYEAVVIGTGFGGAVNGCRLSKKWPGRVLILERGKRYPKGSFPRSPHDMSKNFWNVPE
CCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHCCCCC
EDSSKTRPKKLSKLNQTGLFDIRNYKNMDVVISAGLGGGSLIYANVFLEPPDHIFDERWP
CCCCCCCHHHHHHHCCCCCEEECCCCCCEEEEEECCCCCEEEEEEEEECCCHHHHCCCCC
ANVKKKSLTSYYKIVKEILGSRPIPTNNDPRRKIVRTELYQKFAKSVGRESKLADINVFF
CCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEE
GNDFKKPIPIGLQEKNRYGAVQTSCTYCAECDIGCNTHSKNTLDLNYLFVAENKYKADVR
CCCCCCCCCCCCCCCCCCCCEECCCEEEEECCCCCCCCCCCEEEEEEEEEECCCCCCHHH
TEHLVQKIVPLGPDGSDNSSYHGENGYRIYFRDLSAHSRDLISVITKRVVVSAGTLGSTE
HHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCHH
LLLRCKEEFKTLPDISNHLGKQFSGNGDFLSFAIKGKEPANPNYGPVITQYTDYNLFKSY
HHHHHHHHHHCCCHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEECCCCHHHCC
DPKKAFILQDASYPVFASYFAEASVPWFLRIGFFFHMLGELFKKFLNGKIFGKVGYLMSE
CCCEEEEEECCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCEEEHHHHHHHHH
LMKGDLSYTSAVLLCMGIDRADGEMILDRKRSFEIQWPQKNSMSLYEAILGVMKAFASFI
HHHCCCHHHHHHHHHCCCCCCCCCEEEECCCCEEEECCCCCCHHHHHHHHHHHHHHHHHH
KTDFYFPLPTWSWPVRNNVSVHPLGGCILGNSITHAVTSADSKTFGQVFSYQGLYVADGS
HCCCEECCCCCCCCCCCCCEECCCCCEEECCCHHHHHHCCCCHHHHHHHCCCCEEEECCC
LSPTAIGANPSMTIAALAEKIAEGITGIKPTANL
CCCCEECCCCCHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MKKYEAVVIGTGFGGAVNGCRLSKKWPGRVLILERGKRYPKGSFPRSPHDMSKNFWNVPE
CCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHCCCCC
EDSSKTRPKKLSKLNQTGLFDIRNYKNMDVVISAGLGGGSLIYANVFLEPPDHIFDERWP
CCCCCCCHHHHHHHCCCCCEEECCCCCCEEEEEECCCCCEEEEEEEEECCCHHHHCCCCC
ANVKKKSLTSYYKIVKEILGSRPIPTNNDPRRKIVRTELYQKFAKSVGRESKLADINVFF
CCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEE
GNDFKKPIPIGLQEKNRYGAVQTSCTYCAECDIGCNTHSKNTLDLNYLFVAENKYKADVR
CCCCCCCCCCCCCCCCCCCCEECCCEEEEECCCCCCCCCCCEEEEEEEEEECCCCCCHHH
TEHLVQKIVPLGPDGSDNSSYHGENGYRIYFRDLSAHSRDLISVITKRVVVSAGTLGSTE
HHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCHH
LLLRCKEEFKTLPDISNHLGKQFSGNGDFLSFAIKGKEPANPNYGPVITQYTDYNLFKSY
HHHHHHHHHHCCCHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEECCCCHHHCC
DPKKAFILQDASYPVFASYFAEASVPWFLRIGFFFHMLGELFKKFLNGKIFGKVGYLMSE
CCCEEEEEECCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCEEEHHHHHHHHH
LMKGDLSYTSAVLLCMGIDRADGEMILDRKRSFEIQWPQKNSMSLYEAILGVMKAFASFI
HHHCCCHHHHHHHHHCCCCCCCCCEEEECCCCEEEECCCCCCHHHHHHHHHHHHHHHHHH
KTDFYFPLPTWSWPVRNNVSVHPLGGCILGNSITHAVTSADSKTFGQVFSYQGLYVADGS
HCCCEECCCCCCCCCCCCCEECCCCCEEECCCHHHHHHCCCCHHHHHHHCCCCEEEECCC
LSPTAIGANPSMTIAALAEKIAEGITGIKPTANL
CCCCEECCCCCHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1879703; 2271066; 2051487 [H]