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The map label for this gene is degT [H]

Identifier: 116329188

GI number: 116329188

Start: 3095567

End: 3096691

Strand: Reverse

Name: degT [H]

Synonym: LBL_2616

Alternate gene names: 116329188

Gene position: 3096691-3095567 (Counterclockwise)

Preceding gene: 116329189

Following gene: 116329187

Centisome position: 85.68

GC content: 43.29

Gene sequence:

>1125_bases
ATGGGCGTTCCATTTATCGATATCAAAAGGTTTGAGTCGGGGTTGTTGGAAGAATGGGAAGAAAAGGTCAAAATTCTCAG
TAAGAATGCAAGTTTTATCGGCGGAGAAGAAGTTTCTCTTTTAGAAAGAAATCTCGCGTCTCAAGCGGAAACTAAATATT
CCGTGGCTTGCGCGAATGGAACGGATGCTCTTCAGTTGGCGCTTCGTGCGTTAGGAGTCGGAAAGGGAGACGCTGTTTTG
CTTCCTGATTCCACCTTTTGGGCGACATTTGAATCGGTCGTAAACGTAGGAGCCGATCCTTACACTGTCGATACCGATCC
GAATGATCTTCAGATGGACTTTACCGTGTTTGAGAAAGCGTTGGAAAAGGTCAAACCTAAGGCGGCGATAATCGTTCACC
TTTACGGTTGGGGTTCCGCCCGTCTTGAGGATTTTCGTAAGCTTTGTAGATCGAAAGAAATTCCCTTATTGGAAGACGGC
GCTCAGTGTTACGGTGTTAAATACAAAGGGACGTCTATCTACAAAGATGCGTTGATTGCAACTACTTCCTTTTATCCGGC
TAAAGTTTTAGGCGGCGCCGGTGATGGAGGTGCGGTCTTTACGAACGACGAAAAACTCGCGAACAAGGTGAGAATGCTTG
CCAATCATGGAAGGATTTCTCATTACGCATACGGAGACGTGGGTTGGAATTCTAGATTGGATACTTTACAAGCCGCCTTT
CTTAATATTAACTTGAAACATCTTGAAGCCAGAATTGTTTCGCGTAGAAAAATCGCACAAAAATATTATGAAATACTCCC
GAACCTTGGGGTCCAAGTAATTCATCCGCCTAAAGATTACGAAGAGAACGGATATTGTAATGTGACTCTTGCCGCTCCGG
AAGAACGTTCTGTGATTCAAGAAGTTCTAAAAGAAAAAGAGATCGGTTTCGGCAATATTTATCCCGGCGCTATGAGTGAT
CAACCGGGGGCAAAACCTTATATCAAAGAAAAATTCGGAGATAGACACACGACTGGAAAAATTTGCGCTTCGGTTCTCAA
CTATCCTTTGTTCCCTTATATGAAAGAAGAGGAGTTGGAAGAAATTTTCTCTGCGATTCGTGTGTATAATTCTAAAAAGA
AGTAA

Upstream 100 bases:

>100_bases
CCAAAAAAAGAACGACTTCTTCGAAGTAGAGGGTCGACTCGAAAAGAGTGACATATTTTAGAATGTTATTATATACAAAT
TTAGAATTCAGGAGAGCCGA

Downstream 100 bases:

>100_bases
ATTTGAGCGGTGATCCATTGCTCTTTTGCATTTTGAGTCTGAAGAAAAATATCTTTAAACGATCCGGCAAGTTTTTAAAA
AACGTGGGAGTTCCCACAGA

Product: pyridoxal-phosphate-dependent aminotransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 374; Mature: 373

Protein sequence:

>374_residues
MGVPFIDIKRFESGLLEEWEEKVKILSKNASFIGGEEVSLLERNLASQAETKYSVACANGTDALQLALRALGVGKGDAVL
LPDSTFWATFESVVNVGADPYTVDTDPNDLQMDFTVFEKALEKVKPKAAIIVHLYGWGSARLEDFRKLCRSKEIPLLEDG
AQCYGVKYKGTSIYKDALIATTSFYPAKVLGGAGDGGAVFTNDEKLANKVRMLANHGRISHYAYGDVGWNSRLDTLQAAF
LNINLKHLEARIVSRRKIAQKYYEILPNLGVQVIHPPKDYEENGYCNVTLAAPEERSVIQEVLKEKEIGFGNIYPGAMSD
QPGAKPYIKEKFGDRHTTGKICASVLNYPLFPYMKEEELEEIFSAIRVYNSKKK

Sequences:

>Translated_374_residues
MGVPFIDIKRFESGLLEEWEEKVKILSKNASFIGGEEVSLLERNLASQAETKYSVACANGTDALQLALRALGVGKGDAVL
LPDSTFWATFESVVNVGADPYTVDTDPNDLQMDFTVFEKALEKVKPKAAIIVHLYGWGSARLEDFRKLCRSKEIPLLEDG
AQCYGVKYKGTSIYKDALIATTSFYPAKVLGGAGDGGAVFTNDEKLANKVRMLANHGRISHYAYGDVGWNSRLDTLQAAF
LNINLKHLEARIVSRRKIAQKYYEILPNLGVQVIHPPKDYEENGYCNVTLAAPEERSVIQEVLKEKEIGFGNIYPGAMSD
QPGAKPYIKEKFGDRHTTGKICASVLNYPLFPYMKEEELEEIFSAIRVYNSKKK
>Mature_373_residues
GVPFIDIKRFESGLLEEWEEKVKILSKNASFIGGEEVSLLERNLASQAETKYSVACANGTDALQLALRALGVGKGDAVLL
PDSTFWATFESVVNVGADPYTVDTDPNDLQMDFTVFEKALEKVKPKAAIIVHLYGWGSARLEDFRKLCRSKEIPLLEDGA
QCYGVKYKGTSIYKDALIATTSFYPAKVLGGAGDGGAVFTNDEKLANKVRMLANHGRISHYAYGDVGWNSRLDTLQAAFL
NINLKHLEARIVSRRKIAQKYYEILPNLGVQVIHPPKDYEENGYCNVTLAAPEERSVIQEVLKEKEIGFGNIYPGAMSDQ
PGAKPYIKEKFGDRHTTGKICASVLNYPLFPYMKEEELEEIFSAIRVYNSKKK

Specific function: This membrane protein may function as a sensor protein and may transfer the signal of environmental stimuli to the regulatory region of target genes to activate or repress transcription of the genes [H]

COG id: COG0399

COG function: function code M; Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the degT/dnrJ/eryC1 family [H]

Homologues:

Organism=Escherichia coli, GI145693159, Length=368, Percent_Identity=26.9021739130435, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI2367285, Length=305, Percent_Identity=26.2295081967213, Blast_Score=92, Evalue=5e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000653
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF01041 DegT_DnrJ_EryC1 [H]

EC number: NA

Molecular weight: Translated: 41597; Mature: 41466

Theoretical pI: Translated: 6.53; Mature: 6.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGVPFIDIKRFESGLLEEWEEKVKILSKNASFIGGEEVSLLERNLASQAETKYSVACANG
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCC
TDALQLALRALGVGKGDAVLLPDSTFWATFESVVNVGADPYTVDTDPNDLQMDFTVFEKA
CHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHCCCCCEEECCCCCCEEEHHHHHHHH
LEKVKPKAAIIVHLYGWGSARLEDFRKLCRSKEIPLLEDGAQCYGVKYKGTSIYKDALIA
HHHHCCCEEEEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCHHHHHHHHH
TTSFYPAKVLGGAGDGGAVFTNDEKLANKVRMLANHGRISHYAYGDVGWNSRLDTLQAAF
CCCCCCHHHCCCCCCCCCEEECCHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHH
LNINLKHLEARIVSRRKIAQKYYEILPNLGVQVIHPPKDYEENGYCNVTLAAPEERSVIQ
HCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCEEEEEEECCCHHHHHH
EVLKEKEIGFGNIYPGAMSDQPGAKPYIKEKFGDRHTTGKICASVLNYPLFPYMKEEELE
HHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHCCCCCCCCCHHHHH
EIFSAIRVYNSKKK
HHHHHHHHHCCCCC
>Mature Secondary Structure 
GVPFIDIKRFESGLLEEWEEKVKILSKNASFIGGEEVSLLERNLASQAETKYSVACANG
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCC
TDALQLALRALGVGKGDAVLLPDSTFWATFESVVNVGADPYTVDTDPNDLQMDFTVFEKA
CHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHCCCCCEEECCCCCCEEEHHHHHHHH
LEKVKPKAAIIVHLYGWGSARLEDFRKLCRSKEIPLLEDGAQCYGVKYKGTSIYKDALIA
HHHHCCCEEEEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCHHHHHHHHH
TTSFYPAKVLGGAGDGGAVFTNDEKLANKVRMLANHGRISHYAYGDVGWNSRLDTLQAAF
CCCCCCHHHCCCCCCCCCEEECCHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHH
LNINLKHLEARIVSRRKIAQKYYEILPNLGVQVIHPPKDYEENGYCNVTLAAPEERSVIQ
HCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCEEEEEEECCCHHHHHH
EVLKEKEIGFGNIYPGAMSDQPGAKPYIKEKFGDRHTTGKICASVLNYPLFPYMKEEELE
HHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHCCCCCCCCCHHHHH
EIFSAIRVYNSKKK
HHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2104607 [H]