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The map label for this gene is caiB [H]

Identifier: 116329093

GI number: 116329093

Start: 2979309

End: 2980481

Strand: Reverse

Name: caiB [H]

Synonym: LBL_2513

Alternate gene names: 116329093

Gene position: 2980481-2979309 (Counterclockwise)

Preceding gene: 116329094

Following gene: 116329092

Centisome position: 82.46

GC content: 42.8

Gene sequence:

>1173_bases
ATGAACAAAGGTCCACTTTCCGGAGTAAAAGTAATCGACTTAAGTTTATTACTTCCAGGTCCGCTTTGCTCCATGTATTT
GGGAGATATGGGAGCGGATGTGATTAAGGTTGAAAATCCGAGAGCGATGGATGCCACCCGGGTTATGTTTAAAAAAGCGA
ACGGGGCCCCTTCTTTATTTTTGATGCTCAATCGAAATAAGAAAGCGATTACCCTCAATTTAAAAAAGGAAAAGTCGAGG
GAAATATTTTTTAAACTATTAGAAGACGCTGATATACTTTTGGAAGGTTTTCGACCGGACGGACTTGCCAAGATGGGAAT
CGGTTACGAGGATCTAAAAGAGCGTTTCCCGCGTTTGATTTACTGCGGCATCTACGGATACGGAGCGGAAGGAAAATATA
GGGACTTTGCCGGACACGATGTGAACTATCTTTCACTTTCGGGAGTTCTTTCACAAACCGGTAAAACTCCGCAGATTCCC
GGTTATCAGCTTGCGGATATAGGAGGAGGAACGATGACGGCTCTTGCTTCGATCTTGGCGGCTCTGTATGCGAGGGAAAA
GACGGGGAAAGGACAGAAGATCGCGATTTCTATGATGGATTCTTCCCTTCCGTTTTTATCTTTGTATGCGGGAATATTCG
CGGCTACCGGGAAAAATCCGGAAGGGGGAAACGAACTTCTATCTGGTAAATTACCGAATTATAATATATATCAAACTAAG
GAAGGGCGTTGGGTTGCGTTAGGCGCACTTGAGGATATGTTTTTTAAGACCTTTTTACGTCAGTCGGGATTAGATGGACA
TTTGGGGGAATTACCGACGGAAGAGAAAAACTTTTCCAAGTGGAAAGAAATTCTTACCGCTTACTTTGCATCCAAGACGT
TTGAAGATTTGAACTTTTTATTTGAGAATGAGGATTCTTGTCTGACCCCCGTTAAGACGATGGAAGAAGTCAGTAAAGAT
CCGGTCTTAAGGGAAAGGGGAATGATTCTAGATAAAAAACATCCCGAATATGGTGATTACTTTCAGTTTGGAGCTCCTTT
TCCGTTTTCCGCAACCCCGATTACATATCGGTTGGATCCCCCGAATCATGGGGAACATAATACGTCGATTTACCGATCTC
TCGGATATACTTTGGAAGAAATCGAAACGATGAAAAAGGAAAAAGTGATTTGA

Upstream 100 bases:

>100_bases
TGAATTTTTGGATTCTCAAGAATGGAAATAAAAAAAGGTATCTCAATTTATTCTTTTTTTCTCTATGGGGAAAGATTCTT
TTTGAAGAGGTTTTGATTCG

Downstream 100 bases:

>100_bases
TTTCGTCTGAAAACGTTTAGGACATTGAAATATTTCCAGACTTTAAATCTCTAAATACTAAAAACAGAACGTTCGTTCTT
TGAAATTGAAAAGAATGGCA

Product: Acyl-CoA transferases/carnitine dehydratase

Products: NA

Alternate protein names: Formyl-CoA transferase [H]

Number of amino acids: Translated: 390; Mature: 390

Protein sequence:

>390_residues
MNKGPLSGVKVIDLSLLLPGPLCSMYLGDMGADVIKVENPRAMDATRVMFKKANGAPSLFLMLNRNKKAITLNLKKEKSR
EIFFKLLEDADILLEGFRPDGLAKMGIGYEDLKERFPRLIYCGIYGYGAEGKYRDFAGHDVNYLSLSGVLSQTGKTPQIP
GYQLADIGGGTMTALASILAALYAREKTGKGQKIAISMMDSSLPFLSLYAGIFAATGKNPEGGNELLSGKLPNYNIYQTK
EGRWVALGALEDMFFKTFLRQSGLDGHLGELPTEEKNFSKWKEILTAYFASKTFEDLNFLFENEDSCLTPVKTMEEVSKD
PVLRERGMILDKKHPEYGDYFQFGAPFPFSATPITYRLDPPNHGEHNTSIYRSLGYTLEEIETMKKEKVI

Sequences:

>Translated_390_residues
MNKGPLSGVKVIDLSLLLPGPLCSMYLGDMGADVIKVENPRAMDATRVMFKKANGAPSLFLMLNRNKKAITLNLKKEKSR
EIFFKLLEDADILLEGFRPDGLAKMGIGYEDLKERFPRLIYCGIYGYGAEGKYRDFAGHDVNYLSLSGVLSQTGKTPQIP
GYQLADIGGGTMTALASILAALYAREKTGKGQKIAISMMDSSLPFLSLYAGIFAATGKNPEGGNELLSGKLPNYNIYQTK
EGRWVALGALEDMFFKTFLRQSGLDGHLGELPTEEKNFSKWKEILTAYFASKTFEDLNFLFENEDSCLTPVKTMEEVSKD
PVLRERGMILDKKHPEYGDYFQFGAPFPFSATPITYRLDPPNHGEHNTSIYRSLGYTLEEIETMKKEKVI
>Mature_390_residues
MNKGPLSGVKVIDLSLLLPGPLCSMYLGDMGADVIKVENPRAMDATRVMFKKANGAPSLFLMLNRNKKAITLNLKKEKSR
EIFFKLLEDADILLEGFRPDGLAKMGIGYEDLKERFPRLIYCGIYGYGAEGKYRDFAGHDVNYLSLSGVLSQTGKTPQIP
GYQLADIGGGTMTALASILAALYAREKTGKGQKIAISMMDSSLPFLSLYAGIFAATGKNPEGGNELLSGKLPNYNIYQTK
EGRWVALGALEDMFFKTFLRQSGLDGHLGELPTEEKNFSKWKEILTAYFASKTFEDLNFLFENEDSCLTPVKTMEEVSKD
PVLRERGMILDKKHPEYGDYFQFGAPFPFSATPITYRLDPPNHGEHNTSIYRSLGYTLEEIETMKKEKVI

Specific function: Catalyzes the transfer of the CoA moiety from formyl-CoA to oxalate [H]

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI42794625, Length=394, Percent_Identity=34.2639593908629, Blast_Score=206, Evalue=2e-53,
Organism=Homo sapiens, GI266456254, Length=394, Percent_Identity=34.2639593908629, Blast_Score=206, Evalue=3e-53,
Organism=Homo sapiens, GI300863128, Length=386, Percent_Identity=32.6424870466321, Blast_Score=180, Evalue=2e-45,
Organism=Homo sapiens, GI300863124, Length=412, Percent_Identity=30.5825242718447, Blast_Score=166, Evalue=3e-41,
Organism=Homo sapiens, GI266458393, Length=264, Percent_Identity=36.3636363636364, Blast_Score=161, Evalue=1e-39,
Organism=Homo sapiens, GI266458397, Length=261, Percent_Identity=36.3984674329502, Blast_Score=160, Evalue=3e-39,
Organism=Homo sapiens, GI300863126, Length=383, Percent_Identity=29.5039164490862, Blast_Score=147, Evalue=1e-35,
Organism=Homo sapiens, GI13376042, Length=412, Percent_Identity=27.4271844660194, Blast_Score=120, Evalue=2e-27,
Organism=Homo sapiens, GI42822893, Length=169, Percent_Identity=34.3195266272189, Blast_Score=106, Evalue=3e-23,
Organism=Homo sapiens, GI266458395, Length=169, Percent_Identity=34.3195266272189, Blast_Score=106, Evalue=4e-23,
Organism=Escherichia coli, GI1788717, Length=426, Percent_Identity=30.9859154929577, Blast_Score=156, Evalue=2e-39,
Organism=Escherichia coli, GI87082093, Length=223, Percent_Identity=37.6681614349776, Blast_Score=152, Evalue=3e-38,
Organism=Escherichia coli, GI1786222, Length=403, Percent_Identity=26.0545905707196, Blast_Score=97, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI32564160, Length=317, Percent_Identity=33.4384858044164, Blast_Score=151, Evalue=6e-37,
Organism=Caenorhabditis elegans, GI115535051, Length=355, Percent_Identity=29.8591549295775, Blast_Score=150, Evalue=8e-37,
Organism=Drosophila melanogaster, GI24648431, Length=401, Percent_Identity=31.1720698254364, Blast_Score=182, Evalue=4e-46,
Organism=Drosophila melanogaster, GI24585488, Length=323, Percent_Identity=32.8173374613003, Blast_Score=167, Evalue=8e-42,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673
- InterPro:   IPR017659 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: =2.8.3.16 [H]

Molecular weight: Translated: 43470; Mature: 43470

Theoretical pI: Translated: 7.05; Mature: 7.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKGPLSGVKVIDLSLLLPGPLCSMYLGDMGADVIKVENPRAMDATRVMFKKANGAPSLF
CCCCCCCCEEEEEEEEECCCHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCCCEEE
LMLNRNKKAITLNLKKEKSREIFFKLLEDADILLEGFRPDGLAKMGIGYEDLKERFPRLI
EEEECCCEEEEEEECCHHHHHHHHHHHHCCHHHHCCCCCCCCHHHCCCHHHHHHHCCCEE
YCGIYGYGAEGKYRDFAGHDVNYLSLSGVLSQTGKTPQIPGYQLADIGGGTMTALASILA
EEEEEEECCCCCCCCCCCCCCCEEEHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHH
ALYAREKTGKGQKIAISMMDSSLPFLSLYAGIFAATGKNPEGGNELLSGKLPNYNIYQTK
HHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCEEEEC
EGRWVALGALEDMFFKTFLRQSGLDGHLGELPTEEKNFSKWKEILTAYFASKTFEDLNFL
CCCEEEEHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
FENEDSCLTPVKTMEEVSKDPVLRERGMILDKKHPEYGDYFQFGAPFPFSATPITYRLDP
CCCCCCCCCHHHHHHHHHCCCCHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCEEEEECC
PNHGEHNTSIYRSLGYTLEEIETMKKEKVI
CCCCCCCHHHHHHHCCCHHHHHHHHHHCCC
>Mature Secondary Structure
MNKGPLSGVKVIDLSLLLPGPLCSMYLGDMGADVIKVENPRAMDATRVMFKKANGAPSLF
CCCCCCCCEEEEEEEEECCCHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCCCEEE
LMLNRNKKAITLNLKKEKSREIFFKLLEDADILLEGFRPDGLAKMGIGYEDLKERFPRLI
EEEECCCEEEEEEECCHHHHHHHHHHHHCCHHHHCCCCCCCCHHHCCCHHHHHHHCCCEE
YCGIYGYGAEGKYRDFAGHDVNYLSLSGVLSQTGKTPQIPGYQLADIGGGTMTALASILA
EEEEEEECCCCCCCCCCCCCCCEEEHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHH
ALYAREKTGKGQKIAISMMDSSLPFLSLYAGIFAATGKNPEGGNELLSGKLPNYNIYQTK
HHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCEEEEC
EGRWVALGALEDMFFKTFLRQSGLDGHLGELPTEEKNFSKWKEILTAYFASKTFEDLNFL
CCCEEEEHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
FENEDSCLTPVKTMEEVSKDPVLRERGMILDKKHPEYGDYFQFGAPFPFSATPITYRLDP
CCCCCCCCCHHHHHHHHHCCCCHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCEEEEECC
PNHGEHNTSIYRSLGYTLEEIETMKKEKVI
CCCCCCCHHHHHHHCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12000953 [H]