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The map label for this gene is sbcD

Identifier: 116329016

GI number: 116329016

Start: 2869200

End: 2870285

Strand: Direct

Name: sbcD

Synonym: LBL_2420

Alternate gene names: NA

Gene position: 2869200-2870285 (Clockwise)

Preceding gene: 116329015

Following gene: 116329017

Centisome position: 79.38

GC content: 43.28

Gene sequence:

>1086_bases
ATGATTCGATTTTTACACACAGCAGACCTACACCTAAGCCAAAAGGAAAAGGATTATTCTCTCTCCGTCTTAAAAGAAAT
TGTTTCCAATGCAAACGTAGAAGGATGTACTCACATACTTTTCTGTGGAGATCTTTTCGACCGTAACTCGGATATAGCGG
CACTCAAAGTTGAAGTGAAAGAGATTTTAACGGAGTTTCCGGGAAAAATTTTCTTTATCCCGGGAAATCACGAAGAATTA
GGCATTCCCGAAGGAACTTATCCGATCTCGGCCGACCTTTCCCCGATGTTGTATCCGCAAAAAACCGACAACTTTAAACT
TTGGATCGAGGAAATAGACGGCGTCGAAGCGGAATTTTTCGGCTTTCCGTTTCACAGAACTTTAGATTATGCGAATATTC
AATTCAACGAAAAAAAGGTTCACTATCGGATCGCCCTTTTACACGGAACCGATACAAAGCTGGTGGAATACCTGGGTCCG
TCCCCGGAAGAAACGGATTCCATCCTGGATTCGAAACCGTTTTTGGATGCAAAGTTCGACTATCTTGCTCTCGGTCACAT
TCATCGAGAACGCTCCGAAAAATCCGGTATTCTTCTCAAAGCCTATCCCGGTTCTCCAAGAGTCGTTTCCTCGGGAGAAT
TCGGGCCCCGTACAGTCAACATCGTAACTCTTGGAAAAAGCGGAACTCCGATTCTTGAAAAAAAAATCATCACCTGCGCC
GGAGAATTCAAAGAATTCTCCGTTGCAGCCAACCTTTCCGGAGAAATTCCGGAACTTTCCAACATACCTCCTCTCGTATC
TAAACAAGATTCCGTTCGAATCAACGTTTCCGGAATCGTGGAAGACGAACACATCGTTTCGGAAATCCTGGACCGTTTCT
CCAAGTCTCTCGTTTGCAGAAAATTAGAATTCAAAACGGGCGATCTCAAAACCTCTTCGCTTTTGATCGACAATCCTATC
GCTAAACTATTTTACGATAAATTAATGTTCAAAAAGAGGAATTGGAACACTCCGGACGCTCCCGATTGGAACGAAATTTT
GGTCTTAGGCCTTGAACAAATTGAAGAACATTCGGGGAGAAATTAA

Upstream 100 bases:

>100_bases
GCTTGCAGACGGAAAAACCCCGAAAAAATCTTCAAAGATATCCGAACCTTTTAAATATTGTCCGAGGATACGGATAAACT
CCTACGGCAGGAATTACATC

Downstream 100 bases:

>100_bases
AATGATCTCGGGAATTCAATTGAACCGATTCGGCAAATTTGTCCGAAAAGAATTTAATCTTTCGGACACAGTCACCGTCT
TTTTCGGCAAAAACGAATCC

Product: DNA repair exonuclease

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 361; Mature: 361

Protein sequence:

>361_residues
MIRFLHTADLHLSQKEKDYSLSVLKEIVSNANVEGCTHILFCGDLFDRNSDIAALKVEVKEILTEFPGKIFFIPGNHEEL
GIPEGTYPISADLSPMLYPQKTDNFKLWIEEIDGVEAEFFGFPFHRTLDYANIQFNEKKVHYRIALLHGTDTKLVEYLGP
SPEETDSILDSKPFLDAKFDYLALGHIHRERSEKSGILLKAYPGSPRVVSSGEFGPRTVNIVTLGKSGTPILEKKIITCA
GEFKEFSVAANLSGEIPELSNIPPLVSKQDSVRINVSGIVEDEHIVSEILDRFSKSLVCRKLEFKTGDLKTSSLLIDNPI
AKLFYDKLMFKKRNWNTPDAPDWNEILVLGLEQIEEHSGRN

Sequences:

>Translated_361_residues
MIRFLHTADLHLSQKEKDYSLSVLKEIVSNANVEGCTHILFCGDLFDRNSDIAALKVEVKEILTEFPGKIFFIPGNHEEL
GIPEGTYPISADLSPMLYPQKTDNFKLWIEEIDGVEAEFFGFPFHRTLDYANIQFNEKKVHYRIALLHGTDTKLVEYLGP
SPEETDSILDSKPFLDAKFDYLALGHIHRERSEKSGILLKAYPGSPRVVSSGEFGPRTVNIVTLGKSGTPILEKKIITCA
GEFKEFSVAANLSGEIPELSNIPPLVSKQDSVRINVSGIVEDEHIVSEILDRFSKSLVCRKLEFKTGDLKTSSLLIDNPI
AKLFYDKLMFKKRNWNTPDAPDWNEILVLGLEQIEEHSGRN
>Mature_361_residues
MIRFLHTADLHLSQKEKDYSLSVLKEIVSNANVEGCTHILFCGDLFDRNSDIAALKVEVKEILTEFPGKIFFIPGNHEEL
GIPEGTYPISADLSPMLYPQKTDNFKLWIEEIDGVEAEFFGFPFHRTLDYANIQFNEKKVHYRIALLHGTDTKLVEYLGP
SPEETDSILDSKPFLDAKFDYLALGHIHRERSEKSGILLKAYPGSPRVVSSGEFGPRTVNIVTLGKSGTPILEKKIITCA
GEFKEFSVAANLSGEIPELSNIPPLVSKQDSVRINVSGIVEDEHIVSEILDRFSKSLVCRKLEFKTGDLKTSSLLIDNPI
AKLFYDKLMFKKRNWNTPDAPDWNEILVLGLEQIEEHSGRN

Specific function: Unknown

COG id: COG0420

COG function: function code L; DNA repair exonuclease

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 40681; Mature: 40681

Theoretical pI: Translated: 5.20; Mature: 5.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRFLHTADLHLSQKEKDYSLSVLKEIVSNANVEGCTHILFCGDLFDRNSDIAALKVEVK
CEEEEEECCCEECCCCCCCHHHHHHHHHHCCCCCCEEEEEEECHHHCCCCCEEEEEEHHH
EILTEFPGKIFFIPGNHEELGIPEGTYPISADLSPMLYPQKTDNFKLWIEEIDGVEAEFF
HHHHHCCCEEEEEECCCCCCCCCCCCCEECCCCCCCCCCCCCCCEEEEEEHHCCCCEEHC
GFPFHRTLDYANIQFNEKKVHYRIALLHGTDTKLVEYLGPSPEETDSILDSKPFLDAKFD
CCCHHHEECEEEEEECCCEEEEEEEEEECCCHHHHHHCCCCCCHHHHHHCCCCCCCCCCC
YLALGHIHRERSEKSGILLKAYPGSPRVVSSGEFGPRTVNIVTLGKSGTPILEKKIITCA
EEEHHHHHHHCCCCCCEEEEECCCCCCEEECCCCCCEEEEEEEECCCCCCHHHHHHHHHC
GEFKEFSVAANLSGEIPELSNIPPLVSKQDSVRINVSGIVEDEHIVSEILDRFSKSLVCR
CCCEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEECHHHHHHHHHHHHHHHHHHH
KLEFKTGDLKTSSLLIDNPIAKLFYDKLMFKKRNWNTPDAPDWNEILVLGLEQIEEHSGR
HEECCCCCCEECEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEHHHHHHHCCC
N
C
>Mature Secondary Structure
MIRFLHTADLHLSQKEKDYSLSVLKEIVSNANVEGCTHILFCGDLFDRNSDIAALKVEVK
CEEEEEECCCEECCCCCCCHHHHHHHHHHCCCCCCEEEEEEECHHHCCCCCEEEEEEHHH
EILTEFPGKIFFIPGNHEELGIPEGTYPISADLSPMLYPQKTDNFKLWIEEIDGVEAEFF
HHHHHCCCEEEEEECCCCCCCCCCCCCEECCCCCCCCCCCCCCCEEEEEEHHCCCCEEHC
GFPFHRTLDYANIQFNEKKVHYRIALLHGTDTKLVEYLGPSPEETDSILDSKPFLDAKFD
CCCHHHEECEEEEEECCCEEEEEEEEEECCCHHHHHHCCCCCCHHHHHHCCCCCCCCCCC
YLALGHIHRERSEKSGILLKAYPGSPRVVSSGEFGPRTVNIVTLGKSGTPILEKKIITCA
EEEHHHHHHHCCCCCCEEEEECCCCCCEEECCCCCCEEEEEEEECCCCCCHHHHHHHHHC
GEFKEFSVAANLSGEIPELSNIPPLVSKQDSVRINVSGIVEDEHIVSEILDRFSKSLVCR
CCCEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEECHHHHHHHHHHHHHHHHHHH
KLEFKTGDLKTSSLLIDNPIAKLFYDKLMFKKRNWNTPDAPDWNEILVLGLEQIEEHSGR
HEECCCCCCEECEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEHHHHHHHCCC
N
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA