| Definition | Leptospira borgpetersenii serovar Hardjo-bovis L550 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008508 |
| Length | 3,614,446 |
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The map label for this gene is colA [H]
Identifier: 116328940
GI number: 116328940
Start: 2763961
End: 2766627
Strand: Direct
Name: colA [H]
Synonym: LBL_2336
Alternate gene names: 116328940
Gene position: 2763961-2766627 (Clockwise)
Preceding gene: 116328939
Following gene: 116328943
Centisome position: 76.47
GC content: 37.42
Gene sequence:
>2667_bases ATGATAACGAATATAAAGTGTAAATTAACGTTAAGCGTAATTATAACCTTTTCGTTAGGATGCAACAGCCAAAATAATAA TGGCTTTAAAAACGATCTTAGTTTGTTTGCAACAATGTTTACTCAACCCACACAACAAACTACAATGAGATCGGTAACAA AAAGTGTCGGTTCGTTAAACGAACCAATAGGTTTTAAATCCATTCAAGTAGAAAACGAACAAGACTTTGATAGAATCACA GATGGAAAAAAAAGGATTCTTGTTCCGTCGGTTATGACTTTCGGACCGACTCACTCTTCTTCAAACGGAACCTTACAAAA TGTAACTTCAAACAATTGTACTGGAAGTTACGTTGCGCGTTTAAAACCAAGAGAGTTCGTCAGATTCTTAGAAACACATG ATATAAACTGTGTGGATAAGTTTGTTTGGGATTACGATCAATACTCGAATTATATTTATTCACAAGAGAACATGCTTGAA GTAGTCGATCGGTTGAAAGTTCTTGCTCCTTATTATAGGGGTAACAACGATTTGAACTTTATACAATTGTTCAGAATGTT TTGGGCCGGGTACTATGTAAAACATTCTCACCCTTCCCTCCCATTTGATACAGACCAAATCTCTCAGGCTTTGGAGGCTC CAATGCAGACTTTTGCAAATAGTGCTCATTTCTTAGATGGAACCAACGACGCAGGAAAGGTTTTAGAGTTCTTCTTTACA GTAGCGGATAGTACAGGAAACGGACATATAATTTATCCACGTATCCTTTCCTTTCTTGAAGCTACCTTAAACGATCCACA AAGATTGAGAAACAATTATTCTCAAATCATGGCTTTGGATGCTGTTTTTAGATTGTTCACACGTCATATCAATCCAAACA GCCATGAATTTCTTGCAAAGATCGATTATAAATTGATTGGTAAACTGAGAAGATTTGCTCTTGATACAAGTCTCAACACA GATTCTCTAGTTTGGATCATTAACAATGCGATATTTTGTTTGGATAGGATTTACGAATTTCTTCCTAACTTTCAATCAGC GATCGCTTCAGTTGTGACTGACGTTCTACAAACGTATCCATACATTTCGGAACCGTATCTTTTAGGAGTCAAAGCGTTAA CTCGACATTCAGACTGTGCAAATTTACGGACCGGGAGAATTTGTTTGAGCGATACCAAAGAAGCCGTGAAAAAGACGGTT TTGCCAAATACATATTATTTTGACGATCAAACACAAATCGTACACACATCCCTATCGATCGATGAAATTCAACCTCTTTA TCACGCTCTCAAACAGGTAGAATCTCAGTTTTTCCGTTTGATAGGAATTCACGCTCCCGTATCTGGAGATACTACCGATT CAATTTCCATGTATGTATATGGATCTAGAAAAGATTACGAAACTTTTCATCCTTTTTTATTCGATCTTCCCACGGATAAT GGCGGAATTTATATAGAAGGAGGCAAAGCGCTTTATACGTATCAGCGTACTCCTGCGGAAAGTATATATACTCTGGAAGA ATTACTGCGTCACGAATATACGCATTATCTTGTAGGTAGATTTATAATTCCAGGTTTATGGTCTCAAACTCCGGCTCATG ACAATGAAAGGTTAACTTGGTTTGAAGAAGGAATCGCAGAATTTTTAGTCGGTAGTTCTTCAAGAGAAATTCATCCGCGT AAAAGTTTGATCTCCGAAATTAAAAGAGACGGTTCTTCTAGGATGAACGTTTCAAAAATCCTATCGGCCCGTTATGGAGA TTTCAAATTCTATAGATATTCGGGTAATTTCTTCAATTATCTCTATACCTATAAAAAAGATACCCTGAGAGACTTAATTA GAACATTACGTGATTCAAATATTCAAACATTTGATTACTTAATTGCTCAAATGTCCCAGGACGCGCGACTCAATACTTCG TTTCATGCATATTTAGACTACTTAGTTGGGAACGTAGACAATCTTACGGATCCATCTACGGCCGCTCCGGATTTAGCAAA TTTGTCCACCGACGATCCGAAAGTAATTCGATCTTTCTTTAGAAAGACCAACACCGGATATAAAGCAAAATGTACAACTG CCGCATTCGGACTCAACAGTCGTTTTTCTTGTAGAGGTTTGATATTTGGAAACGCCGCTTATAGTCCAGATTGGAATTCT GCGTGGTCTGATTTCAATTCAAAGATCAACGACCTTATGTCCACCTTGGAAAACAGTGGCGTGAATAACTTTAAGAGTAT GAATTGTAGAATAGGAGAGATTCGTTTTAACAAACATTTAAATCTAGTTCGACCTTTTACAATCTATTCTTGTGAAGGAC CGCTGACATACCGTCCTCGAATTTCTTATAAAAATCCTCAGAGGAGGAGCCAAACTGATTTTCGAAACACAATATCAGGC GTACACTCTACTTGTTTTGCAAATCCATCCACCGGATCGGGTACAACTTGTAATATTCCGATGGCTACGATTGCATTTTC AAATACTGCTACGTATGAAGAAATGTATCAAGACCTAAACGCGAGTTTAAACGAATTGAAATCAGAAATCTATACGATGA GACCTTCGTTCTACAGAAAGCTCGATTGCAATTTCGATTCTATTGATACAGTCAATCTACCAGACGGTAGAAAATACTTA GCCGCAAGTTCAAGTTGTAACCTCTAA
Upstream 100 bases:
>100_bases GAATTTTATAAAACTTTTTATAAAAATTTTTTTTCTTTTATAAAAAGGTGATAACTTTATTTACGGAAACCATAAAATTT AAAAGGAAGGGAATAAAAAA
Downstream 100 bases:
>100_bases ATGATTTCGTCCAGTCCATCCAATCCATTGGGATGGACTGGACATGTTTTCTATTTTTCAAATTTACGAGTTAGGCGTTA ATCATAAAAATCGGATTACT
Product: collagenase
Products: NA
Alternate protein names: 120 kDa collagenase [H]
Number of amino acids: Translated: 888; Mature: 888
Protein sequence:
>888_residues MITNIKCKLTLSVIITFSLGCNSQNNNGFKNDLSLFATMFTQPTQQTTMRSVTKSVGSLNEPIGFKSIQVENEQDFDRIT DGKKRILVPSVMTFGPTHSSSNGTLQNVTSNNCTGSYVARLKPREFVRFLETHDINCVDKFVWDYDQYSNYIYSQENMLE VVDRLKVLAPYYRGNNDLNFIQLFRMFWAGYYVKHSHPSLPFDTDQISQALEAPMQTFANSAHFLDGTNDAGKVLEFFFT VADSTGNGHIIYPRILSFLEATLNDPQRLRNNYSQIMALDAVFRLFTRHINPNSHEFLAKIDYKLIGKLRRFALDTSLNT DSLVWIINNAIFCLDRIYEFLPNFQSAIASVVTDVLQTYPYISEPYLLGVKALTRHSDCANLRTGRICLSDTKEAVKKTV LPNTYYFDDQTQIVHTSLSIDEIQPLYHALKQVESQFFRLIGIHAPVSGDTTDSISMYVYGSRKDYETFHPFLFDLPTDN GGIYIEGGKALYTYQRTPAESIYTLEELLRHEYTHYLVGRFIIPGLWSQTPAHDNERLTWFEEGIAEFLVGSSSREIHPR KSLISEIKRDGSSRMNVSKILSARYGDFKFYRYSGNFFNYLYTYKKDTLRDLIRTLRDSNIQTFDYLIAQMSQDARLNTS FHAYLDYLVGNVDNLTDPSTAAPDLANLSTDDPKVIRSFFRKTNTGYKAKCTTAAFGLNSRFSCRGLIFGNAAYSPDWNS AWSDFNSKINDLMSTLENSGVNNFKSMNCRIGEIRFNKHLNLVRPFTIYSCEGPLTYRPRISYKNPQRRSQTDFRNTISG VHSTCFANPSTGSGTTCNIPMATIAFSNTATYEEMYQDLNASLNELKSEIYTMRPSFYRKLDCNFDSIDTVNLPDGRKYL AASSSCNL
Sequences:
>Translated_888_residues MITNIKCKLTLSVIITFSLGCNSQNNNGFKNDLSLFATMFTQPTQQTTMRSVTKSVGSLNEPIGFKSIQVENEQDFDRIT DGKKRILVPSVMTFGPTHSSSNGTLQNVTSNNCTGSYVARLKPREFVRFLETHDINCVDKFVWDYDQYSNYIYSQENMLE VVDRLKVLAPYYRGNNDLNFIQLFRMFWAGYYVKHSHPSLPFDTDQISQALEAPMQTFANSAHFLDGTNDAGKVLEFFFT VADSTGNGHIIYPRILSFLEATLNDPQRLRNNYSQIMALDAVFRLFTRHINPNSHEFLAKIDYKLIGKLRRFALDTSLNT DSLVWIINNAIFCLDRIYEFLPNFQSAIASVVTDVLQTYPYISEPYLLGVKALTRHSDCANLRTGRICLSDTKEAVKKTV LPNTYYFDDQTQIVHTSLSIDEIQPLYHALKQVESQFFRLIGIHAPVSGDTTDSISMYVYGSRKDYETFHPFLFDLPTDN GGIYIEGGKALYTYQRTPAESIYTLEELLRHEYTHYLVGRFIIPGLWSQTPAHDNERLTWFEEGIAEFLVGSSSREIHPR KSLISEIKRDGSSRMNVSKILSARYGDFKFYRYSGNFFNYLYTYKKDTLRDLIRTLRDSNIQTFDYLIAQMSQDARLNTS FHAYLDYLVGNVDNLTDPSTAAPDLANLSTDDPKVIRSFFRKTNTGYKAKCTTAAFGLNSRFSCRGLIFGNAAYSPDWNS AWSDFNSKINDLMSTLENSGVNNFKSMNCRIGEIRFNKHLNLVRPFTIYSCEGPLTYRPRISYKNPQRRSQTDFRNTISG VHSTCFANPSTGSGTTCNIPMATIAFSNTATYEEMYQDLNASLNELKSEIYTMRPSFYRKLDCNFDSIDTVNLPDGRKYL AASSSCNL >Mature_888_residues MITNIKCKLTLSVIITFSLGCNSQNNNGFKNDLSLFATMFTQPTQQTTMRSVTKSVGSLNEPIGFKSIQVENEQDFDRIT DGKKRILVPSVMTFGPTHSSSNGTLQNVTSNNCTGSYVARLKPREFVRFLETHDINCVDKFVWDYDQYSNYIYSQENMLE VVDRLKVLAPYYRGNNDLNFIQLFRMFWAGYYVKHSHPSLPFDTDQISQALEAPMQTFANSAHFLDGTNDAGKVLEFFFT VADSTGNGHIIYPRILSFLEATLNDPQRLRNNYSQIMALDAVFRLFTRHINPNSHEFLAKIDYKLIGKLRRFALDTSLNT DSLVWIINNAIFCLDRIYEFLPNFQSAIASVVTDVLQTYPYISEPYLLGVKALTRHSDCANLRTGRICLSDTKEAVKKTV LPNTYYFDDQTQIVHTSLSIDEIQPLYHALKQVESQFFRLIGIHAPVSGDTTDSISMYVYGSRKDYETFHPFLFDLPTDN GGIYIEGGKALYTYQRTPAESIYTLEELLRHEYTHYLVGRFIIPGLWSQTPAHDNERLTWFEEGIAEFLVGSSSREIHPR KSLISEIKRDGSSRMNVSKILSARYGDFKFYRYSGNFFNYLYTYKKDTLRDLIRTLRDSNIQTFDYLIAQMSQDARLNTS FHAYLDYLVGNVDNLTDPSTAAPDLANLSTDDPKVIRSFFRKTNTGYKAKCTTAAFGLNSRFSCRGLIFGNAAYSPDWNS AWSDFNSKINDLMSTLENSGVNNFKSMNCRIGEIRFNKHLNLVRPFTIYSCEGPLTYRPRISYKNPQRRSQTDFRNTISG VHSTCFANPSTGSGTTCNIPMATIAFSNTATYEEMYQDLNASLNELKSEIYTMRPSFYRKLDCNFDSIDTVNLPDGRKYL AASSSCNL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PKD domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013510 - InterPro: IPR007280 - InterPro: IPR002169 - InterPro: IPR013661 - InterPro: IPR022409 - InterPro: IPR000601 [H]
Pfam domain/function: PF01752 Peptidase_M9; PF08453 Peptidase_M9_N; PF00801 PKD; PF04151 PPC [H]
EC number: =3.4.24.3 [H]
Molecular weight: Translated: 101398; Mature: 101398
Theoretical pI: Translated: 7.54; Mature: 7.54
Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00142 ZINC_PROTEASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MITNIKCKLTLSVIITFSLGCNSQNNNGFKNDLSLFATMFTQPTQQTTMRSVTKSVGSLN CCCCEEEEEEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC EPIGFKSIQVENEQDFDRITDGKKRILVPSVMTFGPTHSSSNGTLQNVTSNNCTGSYVAR CCCCCCEEEECCCCCHHHHCCCCCEEEECHHHCCCCCCCCCCCCEEECCCCCCCCHHHHH LKPREFVRFLETHDINCVDKFVWDYDQYSNYIYSQENMLEVVDRLKVLAPYYRGNNDLNF CCHHHHHHHHHHCCCCHHHHHHHCHHHHCCEEECCHHHHHHHHHHHHHHHHHCCCCCCHH IQLFRMFWAGYYVKHSHPSLPFDTDQISQALEAPMQTFANSAHFLDGTNDAGKVLEFFFT HHHHHHHHCCEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH VADSTGNGHIIYPRILSFLEATLNDPQRLRNNYSQIMALDAVFRLFTRHINPNSHEFLAK HCCCCCCCCEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH IDYKLIGKLRRFALDTSLNTDSLVWIINNAIFCLDRIYEFLPNFQSAIASVVTDVLQTYP HHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCC YISEPYLLGVKALTRHSDCANLRTGRICLSDTKEAVKKTVLPNTYYFDDQTQIVHTSLSI CCCCCHHHHHHHHHCCCCCCCCCCCCEEEHHHHHHHHHHCCCCEEEECCCCEEEEECCCH DEIQPLYHALKQVESQFFRLIGIHAPVSGDTTDSISMYVYGSRKDYETFHPFLFDLPTDN HHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCEEEEEEECCCCCCCCCCEEEECCCCC GGIYIEGGKALYTYQRTPAESIYTLEELLRHEYTHYLVGRFIIPGLWSQTPAHDNERLTW CCEEEECCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHH FEEGIAEFLVGSSSREIHPRKSLISEIKRDGSSRMNVSKILSARYGDFKFYRYSGNFFNY HHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHCCCCEEEEEECCCCEEH LYTYKKDTLRDLIRTLRDSNIQTFDYLIAQMSQDARLNTSFHAYLDYLVGNVDNLTDPST HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCC AAPDLANLSTDDPKVIRSFFRKTNTGYKAKCTTAAFGLNSRFSCRGLIFGNAAYSPDWNS CCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCEEEEEEECCCCCCCCCH AWSDFNSKINDLMSTLENSGVNNFKSMNCRIGEIRFNKHLNLVRPFTIYSCEGPLTYRPR HHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCEECCEEEEECCCCEEECCC ISYKNPQRRSQTDFRNTISGVHSTCFANPSTGSGTTCNIPMATIAFSNTATYEEMYQDLN CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEECCCEEEEEECCCCCHHHHHHHHH ASLNELKSEIYTMRPSFYRKLDCNFDSIDTVNLPDGRKYLAASSSCNL HHHHHHHHHHHHCCHHHHHEECCCCCCCCEECCCCCCEEEECCCCCCC >Mature Secondary Structure MITNIKCKLTLSVIITFSLGCNSQNNNGFKNDLSLFATMFTQPTQQTTMRSVTKSVGSLN CCCCEEEEEEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC EPIGFKSIQVENEQDFDRITDGKKRILVPSVMTFGPTHSSSNGTLQNVTSNNCTGSYVAR CCCCCCEEEECCCCCHHHHCCCCCEEEECHHHCCCCCCCCCCCCEEECCCCCCCCHHHHH LKPREFVRFLETHDINCVDKFVWDYDQYSNYIYSQENMLEVVDRLKVLAPYYRGNNDLNF CCHHHHHHHHHHCCCCHHHHHHHCHHHHCCEEECCHHHHHHHHHHHHHHHHHCCCCCCHH IQLFRMFWAGYYVKHSHPSLPFDTDQISQALEAPMQTFANSAHFLDGTNDAGKVLEFFFT HHHHHHHHCCEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH VADSTGNGHIIYPRILSFLEATLNDPQRLRNNYSQIMALDAVFRLFTRHINPNSHEFLAK HCCCCCCCCEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH IDYKLIGKLRRFALDTSLNTDSLVWIINNAIFCLDRIYEFLPNFQSAIASVVTDVLQTYP HHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCC YISEPYLLGVKALTRHSDCANLRTGRICLSDTKEAVKKTVLPNTYYFDDQTQIVHTSLSI CCCCCHHHHHHHHHCCCCCCCCCCCCEEEHHHHHHHHHHCCCCEEEECCCCEEEEECCCH DEIQPLYHALKQVESQFFRLIGIHAPVSGDTTDSISMYVYGSRKDYETFHPFLFDLPTDN HHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCEEEEEEECCCCCCCCCCEEEECCCCC GGIYIEGGKALYTYQRTPAESIYTLEELLRHEYTHYLVGRFIIPGLWSQTPAHDNERLTW CCEEEECCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHH FEEGIAEFLVGSSSREIHPRKSLISEIKRDGSSRMNVSKILSARYGDFKFYRYSGNFFNY HHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHCCCCEEEEEECCCCEEH LYTYKKDTLRDLIRTLRDSNIQTFDYLIAQMSQDARLNTSFHAYLDYLVGNVDNLTDPST HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCC AAPDLANLSTDDPKVIRSFFRKTNTGYKAKCTTAAFGLNSRFSCRGLIFGNAAYSPDWNS CCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCEEEEEEECCCCCCCCCH AWSDFNSKINDLMSTLENSGVNNFKSMNCRIGEIRFNKHLNLVRPFTIYSCEGPLTYRPR HHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCEECCEEEEECCCCEEECCC ISYKNPQRRSQTDFRNTISGVHSTCFANPSTGSGTTCNIPMATIAFSNTATYEEMYQDLN CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEECCCEEEEEECCCCCHHHHHHHHH ASLNELKSEIYTMRPSFYRKLDCNFDSIDTVNLPDGRKYLAASSSCNL HHHHHHHHHHHHCCHHHHHEECCCCCCCCEECCCCCCEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8282691; 11792842 [H]