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The map label for this gene is ysgA [H]

Identifier: 116328938

GI number: 116328938

Start: 2759223

End: 2760056

Strand: Direct

Name: ysgA [H]

Synonym: LBL_2334

Alternate gene names: 116328938

Gene position: 2759223-2760056 (Clockwise)

Preceding gene: 116328937

Following gene: 116328939

Centisome position: 76.34

GC content: 41.61

Gene sequence:

>834_bases
TTGAACGAAGAAAAAGAAATCTCGTTTTTAGAGATCACCAGTTTTTCGAACGAGAAACTGAAACATATTTCCAATCTCAA
AGAAAAAAAACACAGGGAAACTTCGGGTCTTTTTTTTATCGAAGGGTACCGTGAAATTTCCAGGGCGCAAAAATCGGGCA
AGGTTCGGTTTCAAAACGTACTCTATTCTCCCGAATGTTTCCTTGGTGAAAATGAATTTTCTCTCATCCGTTCGATCGGA
GTTAAAAACATCAAAGTTCCGAAAAAGGTCTTCGAAAAAATTTCCTATAGAGATAGACCGGACGGACTTATCGCAACCGC
ACACTTTTTTCCGATAGGACTGGATTTCTTTGAGAAAAAATCAGAAACATTCAAAAAATTGAAACCGATTTTAGTCATAG
AAGGCGTGGAAAAACCGGGAAATCTCGGAACGATCCTTCGAACCGCGGAAGGCGCGGGGTTCCATACGGTAATCGTATCC
GACCCAAAGTTGGATTTGTTTAATCCGAACGTGATCCGCGCTTCCACCGGAGCTTTGTTCACTTTGGACGTTTATCTCGG
AGAAATCGAAACGATCTACGGGATTTTGAAAAAAAATCATTACAGAACATTAGCCGTAACACCGGAGGCAAAAAAATTCT
ATTTTGACGCGGACCTCAAAGGGAAGATCGCTCTCGTCTTTGGATCGGAACAATACGGACTTTCTTCTTACGCAAGAAAT
CATTCCGACGAATATCTTTCTCTTCCGATGCTCGGGGAAGCGGATTCTCTCAATCTCGCAATGTCTGCAGGAATCTTAAT
GTACGAAGTTATTCGACAGGGTTTCGAAAAATGA

Upstream 100 bases:

>100_bases
AAGGTCGTTTTTATCTTGGAGAACTTTCCATTCCGGAAGAAAGCGGAAAACTTTACCCCGCCGGTTCGAATTGTATCTAT
GTTTCAGAGAGACTTTCGCT

Downstream 100 bases:

>100_bases
AAATCACATATTACGTAAGCGGCCACGGATTTGGTCATATTAGCCGATCCATGGAAATCATTCTCCATCTTCTCCGTAGT
TTTCCCGATTTGGAAATCGA

Product: rRNA methylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 277; Mature: 277

Protein sequence:

>277_residues
MNEEKEISFLEITSFSNEKLKHISNLKEKKHRETSGLFFIEGYREISRAQKSGKVRFQNVLYSPECFLGENEFSLIRSIG
VKNIKVPKKVFEKISYRDRPDGLIATAHFFPIGLDFFEKKSETFKKLKPILVIEGVEKPGNLGTILRTAEGAGFHTVIVS
DPKLDLFNPNVIRASTGALFTLDVYLGEIETIYGILKKNHYRTLAVTPEAKKFYFDADLKGKIALVFGSEQYGLSSYARN
HSDEYLSLPMLGEADSLNLAMSAGILMYEVIRQGFEK

Sequences:

>Translated_277_residues
MNEEKEISFLEITSFSNEKLKHISNLKEKKHRETSGLFFIEGYREISRAQKSGKVRFQNVLYSPECFLGENEFSLIRSIG
VKNIKVPKKVFEKISYRDRPDGLIATAHFFPIGLDFFEKKSETFKKLKPILVIEGVEKPGNLGTILRTAEGAGFHTVIVS
DPKLDLFNPNVIRASTGALFTLDVYLGEIETIYGILKKNHYRTLAVTPEAKKFYFDADLKGKIALVFGSEQYGLSSYARN
HSDEYLSLPMLGEADSLNLAMSAGILMYEVIRQGFEK
>Mature_277_residues
MNEEKEISFLEITSFSNEKLKHISNLKEKKHRETSGLFFIEGYREISRAQKSGKVRFQNVLYSPECFLGENEFSLIRSIG
VKNIKVPKKVFEKISYRDRPDGLIATAHFFPIGLDFFEKKSETFKKLKPILVIEGVEKPGNLGTILRTAEGAGFHTVIVS
DPKLDLFNPNVIRASTGALFTLDVYLGEIETIYGILKKNHYRTLAVTPEAKKFYFDADLKGKIALVFGSEQYGLSSYARN
HSDEYLSLPMLGEADSLNLAMSAGILMYEVIRQGFEK

Specific function: Unknown

COG id: COG0566

COG function: function code J; rRNA methylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family [H]

Homologues:

Organism=Escherichia coli, GI1790623, Length=145, Percent_Identity=31.0344827586207, Blast_Score=95, Evalue=5e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001537
- InterPro:   IPR013123 [H]

Pfam domain/function: PF00588 SpoU_methylase; PF08032 SpoU_sub_bind [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 31369; Mature: 31369

Theoretical pI: Translated: 9.08; Mature: 9.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNEEKEISFLEITSFSNEKLKHISNLKEKKHRETSGLFFIEGYREISRAQKSGKVRFQNV
CCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCHHCCEEEEECHHHHHHHHHCCCEEEEEE
LYSPECFLGENEFSLIRSIGVKNIKVPKKVFEKISYRDRPDGLIATAHFFPIGLDFFEKK
EECCCEEECCCHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCEEEEEEEEECCHHHHHHH
SETFKKLKPILVIEGVEKPGNLGTILRTAEGAGFHTVIVSDPKLDLFNPNVIRASTGALF
HHHHHHCCCEEEEECCCCCCCCEEEEEECCCCCEEEEEEECCCEECCCCCEEEECCCCEE
TLDVYLGEIETIYGILKKNHYRTLAVTPEAKKFYFDADLKGKIALVFGSEQYGLSSYARN
EEEEEHHHHHHHHHHHHCCCEEEEEECCCCCEEEECCCCCCEEEEEECCCCCCHHHHHCC
HSDEYLSLPMLGEADSLNLAMSAGILMYEVIRQGFEK
CCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNEEKEISFLEITSFSNEKLKHISNLKEKKHRETSGLFFIEGYREISRAQKSGKVRFQNV
CCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCHHCCEEEEECHHHHHHHHHCCCEEEEEE
LYSPECFLGENEFSLIRSIGVKNIKVPKKVFEKISYRDRPDGLIATAHFFPIGLDFFEKK
EECCCEEECCCHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCEEEEEEEEECCHHHHHHH
SETFKKLKPILVIEGVEKPGNLGTILRTAEGAGFHTVIVSDPKLDLFNPNVIRASTGALF
HHHHHHCCCEEEEECCCCCCCCEEEEEECCCCCEEEEEEECCCEECCCCCEEEECCCCEE
TLDVYLGEIETIYGILKKNHYRTLAVTPEAKKFYFDADLKGKIALVFGSEQYGLSSYARN
EEEEEHHHHHHHHHHHHCCCEEEEEECCCCCEEEECCCCCCEEEEEECCCCCCHHHHHCC
HSDEYLSLPMLGEADSLNLAMSAGILMYEVIRQGFEK
CCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]