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The map label for this gene is ydhD [H]

Identifier: 116328870

GI number: 116328870

Start: 2662475

End: 2663872

Strand: Reverse

Name: ydhD [H]

Synonym: LBL_2257

Alternate gene names: 116328870

Gene position: 2663872-2662475 (Counterclockwise)

Preceding gene: 116328871

Following gene: 116328867

Centisome position: 73.7

GC content: 38.34

Gene sequence:

>1398_bases
TTGAAACTTAAGCTTATTTTTATTTCGATCCTAAGTATTGCGATAGCGGCCATACTGTCGTTACGCCTCAACCAAAGACC
TTTAAAAAAAGAGGTTCTGATTTCGGAGAATTATGGCTCCGAGCTTCAAAATTTAAAATACTTTGCGGGGGAAACTTGGG
AGTTGATAAACGACCGATTTCATTTGCCTAAAGGTATCTTAGAAATATTAATTTTTTTTAATAGTGCCGAAGACGGAAAT
CAAAAAAAGGAATTTCTTGCTTCCACTTGGTCTTCGGATATCGTCGCGATGACACAAAACATACGATTATACGACGAGAT
ACATCCTTTTCTTTATACCTTGGAAGGCGGTAGAAGTAATACGGGTAATATCAAATCAGTTTGGAATCCCCGGGCGCAAG
AAGTTTACATTTGGGCTTTGAGAACGATCTCTCCTAAAACCAAAATTATACCTACCATATTTCGTTGGGAAAACGATTTT
GAAAAAGTATCGGATGCGATCGGGTTCAAAGGAAATACGAAGGTCCGCGATTATCACATACGACAAATCATAAAAGAGAT
CGAAATTTACGGTTATGATGGAATCGATATCGACTACGAGGGAATGACCTGTGATAAGAGGGATAGTTTTGAGAATTTTT
TATCCCTATTATCCGAGGAATTGAAAAAGAAGAAGAAAATTTTATCAGTTGCGATTCATCCGAAAACCTTTGCAGAAAAG
ACTTCCGAGTATTATTGCAAAGAAAACGGAAAGAAGATACAGGTGGATTTTTATGAGACTTATCGAGGGCAACTTTCTCA
TGACTATGAATTTTTGGGAAAGGTCGCGGATAAGGTCAAAATTATGGCGTATGAATTGCATCCTAGGAAAAACGCATTTC
CTGGGCCGGGACCTCAGGCTCCGACCTGGTGGATTGAAAGAATATTAGAATATTCTACAAAACAAATTCCTAATTCAAAA
TTATATATGGCCATTCCGACTTACGGGTATGATTGGTCTCTGAACTGTGATATCCCTTCCAAAGCGGTATTCTATTCCAG
AGCGCAATATATTAAAATGAATTGGAATCCAAGATATGAAGAGCCGACCGATGTGTCTAAAATTTTCAAGGAAATTAAGA
AATCCGGAGATTGGATCTATCTGCGACCCTATTTATACCGCCACGAAGGGCGGATTTATGACGATCCTTCTCTTTGGTAT
ACTCTGGGAGGTTGCGATCGAGTTGCCTTTTATATGAACAAACGATCCTTCGAAACGAAGATGAATCTGTTAAAGAAGTA
TAAAATTCGAGGATTTTCTTTTTGGCAACTGATTCAGGATAACGATCCCGAAATTCATTCTTATCTAAAGGCAATGGCTG
AAAATAAACGCGAGGATCGGAAAGCTTCCTTCTTTTGA

Upstream 100 bases:

>100_bases
GGATTTCCTGTGAATAAAAGAAAATTGGAATTCACTTTTCAGTGTGTAATCCTCAAATTAGATTGGTTCAAAATTATAGT
TCATTCCAAAAATCATCGCC

Downstream 100 bases:

>100_bases
AAAGGATCAATGTTTAGTGATAGTGAATTCTAACATGAGATCGGCGTAAAGGATTACAAGTTTCTGTTTGTAAAGAATAT
TCTGATTTTATTATGTATTC

Product: glycosyl hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 465; Mature: 465

Protein sequence:

>465_residues
MKLKLIFISILSIAIAAILSLRLNQRPLKKEVLISENYGSELQNLKYFAGETWELINDRFHLPKGILEILIFFNSAEDGN
QKKEFLASTWSSDIVAMTQNIRLYDEIHPFLYTLEGGRSNTGNIKSVWNPRAQEVYIWALRTISPKTKIIPTIFRWENDF
EKVSDAIGFKGNTKVRDYHIRQIIKEIEIYGYDGIDIDYEGMTCDKRDSFENFLSLLSEELKKKKKILSVAIHPKTFAEK
TSEYYCKENGKKIQVDFYETYRGQLSHDYEFLGKVADKVKIMAYELHPRKNAFPGPGPQAPTWWIERILEYSTKQIPNSK
LYMAIPTYGYDWSLNCDIPSKAVFYSRAQYIKMNWNPRYEEPTDVSKIFKEIKKSGDWIYLRPYLYRHEGRIYDDPSLWY
TLGGCDRVAFYMNKRSFETKMNLLKKYKIRGFSFWQLIQDNDPEIHSYLKAMAENKREDRKASFF

Sequences:

>Translated_465_residues
MKLKLIFISILSIAIAAILSLRLNQRPLKKEVLISENYGSELQNLKYFAGETWELINDRFHLPKGILEILIFFNSAEDGN
QKKEFLASTWSSDIVAMTQNIRLYDEIHPFLYTLEGGRSNTGNIKSVWNPRAQEVYIWALRTISPKTKIIPTIFRWENDF
EKVSDAIGFKGNTKVRDYHIRQIIKEIEIYGYDGIDIDYEGMTCDKRDSFENFLSLLSEELKKKKKILSVAIHPKTFAEK
TSEYYCKENGKKIQVDFYETYRGQLSHDYEFLGKVADKVKIMAYELHPRKNAFPGPGPQAPTWWIERILEYSTKQIPNSK
LYMAIPTYGYDWSLNCDIPSKAVFYSRAQYIKMNWNPRYEEPTDVSKIFKEIKKSGDWIYLRPYLYRHEGRIYDDPSLWY
TLGGCDRVAFYMNKRSFETKMNLLKKYKIRGFSFWQLIQDNDPEIHSYLKAMAENKREDRKASFF
>Mature_465_residues
MKLKLIFISILSIAIAAILSLRLNQRPLKKEVLISENYGSELQNLKYFAGETWELINDRFHLPKGILEILIFFNSAEDGN
QKKEFLASTWSSDIVAMTQNIRLYDEIHPFLYTLEGGRSNTGNIKSVWNPRAQEVYIWALRTISPKTKIIPTIFRWENDF
EKVSDAIGFKGNTKVRDYHIRQIIKEIEIYGYDGIDIDYEGMTCDKRDSFENFLSLLSEELKKKKKILSVAIHPKTFAEK
TSEYYCKENGKKIQVDFYETYRGQLSHDYEFLGKVADKVKIMAYELHPRKNAFPGPGPQAPTWWIERILEYSTKQIPNSK
LYMAIPTYGYDWSLNCDIPSKAVFYSRAQYIKMNWNPRYEEPTDVSKIFKEIKKSGDWIYLRPYLYRHEGRIYDDPSLWY
TLGGCDRVAFYMNKRSFETKMNLLKKYKIRGFSFWQLIQDNDPEIHSYLKAMAENKREDRKASFF

Specific function: Unknown

COG id: COG3858

COG function: function code R; Predicted glycosyl hydrolase

Gene ontology:

Cell location: Spore wall (Probable). Note=Probably localized either on the surface of the outer spore membrane and/or in the inner spore coat [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 2 LysM repeats [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011583
- InterPro:   IPR001223
- InterPro:   IPR017853
- InterPro:   IPR013781
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF00704 Glyco_hydro_18; PF01476 LysM [H]

EC number: NA

Molecular weight: Translated: 54893; Mature: 54893

Theoretical pI: Translated: 9.32; Mature: 9.32

Prosite motif: PS01095 CHITINASE_18

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLKLIFISILSIAIAAILSLRLNQRPLKKEVLISENYGSELQNLKYFAGETWELINDRF
CEEEEHHHHHHHHHHHHHHHHHCCCCCCCHHEEEECCCCCHHHHHHHHCCCHHHHHHCCC
HLPKGILEILIFFNSAEDGNQKKEFLASTWSSDIVAMTQNIRLYDEIHPFLYTLEGGRSN
CCCHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCEEHHCCCCHHHHHCCEEEEEECCCCC
TGNIKSVWNPRAQEVYIWALRTISPKTKIIPTIFRWENDFEKVSDAIGFKGNTKVRDYHI
CCCCHHCCCCCCCEEEEEEEEECCCCCCCCHHHHHCCCHHHHHHHHHCCCCCCCHHHHHH
RQIIKEIEIYGYDGIDIDYEGMTCDKRDSFENFLSLLSEELKKKKKILSVAIHPKTFAEK
HHHHHHHHEECCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHEEEEECCHHHHHH
TSEYYCKENGKKIQVDFYETYRGQLSHDYEFLGKVADKVKIMAYELHPRKNAFPGPGPQA
HHHHHHHCCCCEEEEEEEEHHCCCCCCCHHHHHHHHHHEEEEEEEECCCCCCCCCCCCCC
PTWWIERILEYSTKQIPNSKLYMAIPTYGYDWSLNCDIPSKAVFYSRAQYIKMNWNPRYE
CHHHHHHHHHHHHHCCCCCEEEEEECCCCCCEEEECCCCCHHHHHCCEEEEEECCCCCCC
EPTDVSKIFKEIKKSGDWIYLRPYLYRHEGRIYDDPSLWYTLGGCDRVAFYMNKRSFETK
CCCCHHHHHHHHHHCCCEEEECCEEEECCCCEECCCCEEEEECCCCEEEEECCCHHHHHH
MNLLKKYKIRGFSFWQLIQDNDPEIHSYLKAMAENKREDRKASFF
HHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHCCHHHHHCCCC
>Mature Secondary Structure
MKLKLIFISILSIAIAAILSLRLNQRPLKKEVLISENYGSELQNLKYFAGETWELINDRF
CEEEEHHHHHHHHHHHHHHHHHCCCCCCCHHEEEECCCCCHHHHHHHHCCCHHHHHHCCC
HLPKGILEILIFFNSAEDGNQKKEFLASTWSSDIVAMTQNIRLYDEIHPFLYTLEGGRSN
CCCHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCEEHHCCCCHHHHHCCEEEEEECCCCC
TGNIKSVWNPRAQEVYIWALRTISPKTKIIPTIFRWENDFEKVSDAIGFKGNTKVRDYHI
CCCCHHCCCCCCCEEEEEEEEECCCCCCCCHHHHHCCCHHHHHHHHHCCCCCCCHHHHHH
RQIIKEIEIYGYDGIDIDYEGMTCDKRDSFENFLSLLSEELKKKKKILSVAIHPKTFAEK
HHHHHHHHEECCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHEEEEECCHHHHHH
TSEYYCKENGKKIQVDFYETYRGQLSHDYEFLGKVADKVKIMAYELHPRKNAFPGPGPQA
HHHHHHHCCCCEEEEEEEEHHCCCCCCCHHHHHHHHHHEEEEEEEECCCCCCCCCCCCCC
PTWWIERILEYSTKQIPNSKLYMAIPTYGYDWSLNCDIPSKAVFYSRAQYIKMNWNPRYE
CHHHHHHHHHHHHHCCCCCEEEEEECCCCCCEEEECCCCCHHHHHCCEEEEEECCCCCCC
EPTDVSKIFKEIKKSGDWIYLRPYLYRHEGRIYDDPSLWYTLGGCDRVAFYMNKRSFETK
CCCCHHHHHHHHHHCCCEEEECCEEEECCCCEECCCCEEEEECCCCEEEEECCCHHHHHH
MNLLKKYKIRGFSFWQLIQDNDPEIHSYLKAMAENKREDRKASFF
HHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHCCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377; 12177332 [H]