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The map label for this gene is rodA [H]

Identifier: 116328599

GI number: 116328599

Start: 2283702

End: 2285207

Strand: Reverse

Name: rodA [H]

Synonym: LBL_1956

Alternate gene names: 116328599

Gene position: 2285207-2283702 (Counterclockwise)

Preceding gene: 116328600

Following gene: 116328598

Centisome position: 63.22

GC content: 43.03

Gene sequence:

>1506_bases
TTGAAGCCAGATAAGTCCATAGAGAGAATCGATTACTTTTTAGTGATTTCGGTCGTGATTGTCGTTCTTTGTAGCGTGAT
GACCCTATACAGTCAGGAAGTCAACTTCGAAGACGGTCCCGGAAAATGGTATCGCCAGCTGTTTTATTTCGTTATCGGAC
TTGTAATCATGTATTTCGTGTCGAGGATCAACTATCAGTTGTTAGGTGCTTATGCGCTTGTGATTTATGTGTTCACAATT
TTCTTACTGATAATCACGTTAATTCCCGGAATCGGATATTTGCCTTCGGGAAGAGGGGCCCGCTCTTGGATCAAAATTGG
ACCTATTGGGATTCAAACCTCTGAGTTTGCAAAGTTGTCCTCGGTGATTTTATTGGGTCAATTCATGGTCTTAAAGGAAA
AAGATATGAAGAACTTAATTGTTCTTTCGATTCCGTTCGTAATCGTGATCGTTCCGATGGTATTTATTCTACTGCAGCCC
GATTTCGGAACTGCGGTATCTTTTCTGCCGATTTTGTTTACGATGCTCTTTTTCGGAGGAGCGGATATCCTTCACATCGG
ATCCTTATTGGCGTTCGGAGGAATTACTCTCATGGTTCCCATGTTCGTGGAATATTCTAGACTGACTTTGATAAACGACA
TCGCCGACTTTTTACAAAGGACCGGAAAAACGGATCTTTTATCCGTGGTTAATCGACTCGGTGGAAAGATATGGCTCGCG
CTCGACGGAAAAGACGTAAAGACGGCCAATATTACTCCCAAAACGTTAAACTCATTGCGGGAAGCGGTGGATCAGGTTGT
GGAAGTGGAAGGAGGATTTTTCTTTAAGATTTTCTCCAATCAAACTCTGCTTTTGACTTTTGGAGCGATCTTTTTGATCG
CTTGTCTTGTTATGGTGGGAATCCGAATTGCCAGAGGAAGCAGAGCATTAAGACGATATTATATACCTTTGGGGATTTTG
GGAATCAGTTTGATCTCCGCGGTTGTAGTGATGAAAATCGTGCCCTTTAGAGAGAACCAGGTGATTCGATTAACCGCGTT
TTTAAATCCGGAAGAATTCAAACAAGGAGCCGGGTATCAACTCAGGGCTTCGAAACCTGCGGTCGGATCCGGTAGATTTT
TCGGAAAAGGTTTGATGAATGCAGAGATGACGGAAGGAAGAATCCCGCACGTCCCCGAATCGAGCACCGATTTTATTTTC
GCTTCTTGGGCCGAGCAGACCGGGTTTTTAGGGTCCGTATTTTTATTATTCTTTTTATTTTCGATTCCGCTCAGAGGTTT
ACAGATCAGCTACGAGAGTAAGGATAGATTCGGATCTTTACTTGCATCCGGAATCGTCGCGTTACTTTTTTATCACATGG
CGATTAACATAGGTATTGTGATCGGGCTTATGCCCGTAACGGGAATTCCTTTGTCGTTTATGAGTTATGGAGGATCGCAT
TTGATCATGTCCATGACCGCGATAGGAATCATACTTTCGATTAAAAGTAGAAAACACGCGAACTGA

Upstream 100 bases:

>100_bases
GTGGCGAGAGAAATGTTTCATGCCGCGTTTCCTCCGGGAACGTTCAAAAAATCACAGGATATAACGCCGTCTTCTCCTTC
TACGGGACAGGAGGGAACGT

Downstream 100 bases:

>100_bases
ATTCCTGTTTCTCCAAAAAAAATTGAACGATCTTGCGGTTTCTATACGAGGCATAAAACAATTTATATTATAAACTAGGG
TGGCATTCGAGAAGAGGAAG

Product: rod shape-determining protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 501; Mature: 501

Protein sequence:

>501_residues
MKPDKSIERIDYFLVISVVIVVLCSVMTLYSQEVNFEDGPGKWYRQLFYFVIGLVIMYFVSRINYQLLGAYALVIYVFTI
FLLIITLIPGIGYLPSGRGARSWIKIGPIGIQTSEFAKLSSVILLGQFMVLKEKDMKNLIVLSIPFVIVIVPMVFILLQP
DFGTAVSFLPILFTMLFFGGADILHIGSLLAFGGITLMVPMFVEYSRLTLINDIADFLQRTGKTDLLSVVNRLGGKIWLA
LDGKDVKTANITPKTLNSLREAVDQVVEVEGGFFFKIFSNQTLLLTFGAIFLIACLVMVGIRIARGSRALRRYYIPLGIL
GISLISAVVVMKIVPFRENQVIRLTAFLNPEEFKQGAGYQLRASKPAVGSGRFFGKGLMNAEMTEGRIPHVPESSTDFIF
ASWAEQTGFLGSVFLLFFLFSIPLRGLQISYESKDRFGSLLASGIVALLFYHMAINIGIVIGLMPVTGIPLSFMSYGGSH
LIMSMTAIGIILSIKSRKHAN

Sequences:

>Translated_501_residues
MKPDKSIERIDYFLVISVVIVVLCSVMTLYSQEVNFEDGPGKWYRQLFYFVIGLVIMYFVSRINYQLLGAYALVIYVFTI
FLLIITLIPGIGYLPSGRGARSWIKIGPIGIQTSEFAKLSSVILLGQFMVLKEKDMKNLIVLSIPFVIVIVPMVFILLQP
DFGTAVSFLPILFTMLFFGGADILHIGSLLAFGGITLMVPMFVEYSRLTLINDIADFLQRTGKTDLLSVVNRLGGKIWLA
LDGKDVKTANITPKTLNSLREAVDQVVEVEGGFFFKIFSNQTLLLTFGAIFLIACLVMVGIRIARGSRALRRYYIPLGIL
GISLISAVVVMKIVPFRENQVIRLTAFLNPEEFKQGAGYQLRASKPAVGSGRFFGKGLMNAEMTEGRIPHVPESSTDFIF
ASWAEQTGFLGSVFLLFFLFSIPLRGLQISYESKDRFGSLLASGIVALLFYHMAINIGIVIGLMPVTGIPLSFMSYGGSH
LIMSMTAIGIILSIKSRKHAN
>Mature_501_residues
MKPDKSIERIDYFLVISVVIVVLCSVMTLYSQEVNFEDGPGKWYRQLFYFVIGLVIMYFVSRINYQLLGAYALVIYVFTI
FLLIITLIPGIGYLPSGRGARSWIKIGPIGIQTSEFAKLSSVILLGQFMVLKEKDMKNLIVLSIPFVIVIVPMVFILLQP
DFGTAVSFLPILFTMLFFGGADILHIGSLLAFGGITLMVPMFVEYSRLTLINDIADFLQRTGKTDLLSVVNRLGGKIWLA
LDGKDVKTANITPKTLNSLREAVDQVVEVEGGFFFKIFSNQTLLLTFGAIFLIACLVMVGIRIARGSRALRRYYIPLGIL
GISLISAVVVMKIVPFRENQVIRLTAFLNPEEFKQGAGYQLRASKPAVGSGRFFGKGLMNAEMTEGRIPHVPESSTDFIF
ASWAEQTGFLGSVFLLFFLFSIPLRGLQISYESKDRFGSLLASGIVALLFYHMAINIGIVIGLMPVTGIPLSFMSYGGSH
LIMSMTAIGIILSIKSRKHAN

Specific function: This is one of the proteins responsible for the rod shape of the cell [H]

COG id: COG0772

COG function: function code D; Bacterial cell division membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ftsW/rodA/spoVE family [H]

Homologues:

Organism=Escherichia coli, GI1786853, Length=180, Percent_Identity=37.7777777777778, Blast_Score=114, Evalue=2e-26,
Organism=Escherichia coli, GI1786277, Length=182, Percent_Identity=35.1648351648352, Blast_Score=106, Evalue=4e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001182
- InterPro:   IPR018365
- InterPro:   IPR011923 [H]

Pfam domain/function: PF01098 FTSW_RODA_SPOVE [H]

EC number: NA

Molecular weight: Translated: 55484; Mature: 55484

Theoretical pI: Translated: 9.94; Mature: 9.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHEECCCCCCC
>Mature Secondary Structure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HHHHHHHHHHHHEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9665876 [H]