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The map label for this gene is pdxJ [H]

Identifier: 116328567

GI number: 116328567

Start: 2243607

End: 2244359

Strand: Direct

Name: pdxJ [H]

Synonym: LBL_1924

Alternate gene names: 116328567

Gene position: 2243607-2244359 (Clockwise)

Preceding gene: 116328558

Following gene: 116328569

Centisome position: 62.07

GC content: 42.9

Gene sequence:

>753_bases
TTGAAAATCAAACTGAGCGTAAATATCAACAAAATCGCCACCCTCCGAAATTCGAGAGGCGGAAACATTCCGGATCTTTT
GTATTTCGCGGATTTGGTTCTCCGAGCGGGAGCGGAAGGAATTACAGTTCATCCCAGAGAAGACGAAAGGCATATTCGAA
AAGACGACGTGTTTTCTTTAAAAGAATTCATCGATTCTTACAATTATAAGAACAATACAAAAATCGAATATAACATGGAA
GGAGAACCCTCTCCCCGTTTTTTAGATTTGCTCCTCAATATAAGACCCGATCAGGCGACCCTTGTTCCCGTAACTCCCGG
AGAAATCACCTCTGATCACGGATTCGACTTTAAAAAGGACTTAACGACCCTTCAAGAATATTCTAAAATTCTAAAGAAAG
AAAAAATCCGCACTTCCCTTTTTGTGGAAACCGATCCGGAAAATCTGAAACTCGCCTCTCTTACGGGAGCCGACCGTGTG
GAATTTTATACGGGGCCTTTTGCAGAAAAATTCGATCGTTCTCCCCAAATCGGACAAGAATGTTTTGAATCCTTATACAT
CCCTGCCGCAAAGGCCGTACTGAGCCAAAAGATGGGAATCAATGCGGGACACGATTTGGACCATGACAATCTGAAAATTT
TTTCTCGTCTTCCGGGACTTCAGGAAGTTTCCATCGGTCACAGACTGATTTCCAGAGCTTTGGAAACCGGGATCGATCAA
AGTGTTAAGGACTATCTTCAAGCTCTTTCGTGA

Upstream 100 bases:

>100_bases
TTCCAAAAAAAGGCAAGGAAAGAATCTTCGATTTTTTCAGATTCCCAGAAAAGCCGAAATTTTTCTTCTTAGTGAAAAGT
CCATTTCGGGAGTCGAGTTT

Downstream 100 bases:

>100_bases
GATATCGAAATCCTTCAAAACTCGGATCTCCTTGAATCAGATAAAACGCGGCTTTTTTTAGATGCAGCGCCAATTTTTTC
GCGTTCTGGTTTTTTTGTGA

Product: pyridoxine 5'-phosphate synthase

Products: NA

Alternate protein names: PNP synthase [H]

Number of amino acids: Translated: 250; Mature: 250

Protein sequence:

>250_residues
MKIKLSVNINKIATLRNSRGGNIPDLLYFADLVLRAGAEGITVHPREDERHIRKDDVFSLKEFIDSYNYKNNTKIEYNME
GEPSPRFLDLLLNIRPDQATLVPVTPGEITSDHGFDFKKDLTTLQEYSKILKKEKIRTSLFVETDPENLKLASLTGADRV
EFYTGPFAEKFDRSPQIGQECFESLYIPAAKAVLSQKMGINAGHDLDHDNLKIFSRLPGLQEVSIGHRLISRALETGIDQ
SVKDYLQALS

Sequences:

>Translated_250_residues
MKIKLSVNINKIATLRNSRGGNIPDLLYFADLVLRAGAEGITVHPREDERHIRKDDVFSLKEFIDSYNYKNNTKIEYNME
GEPSPRFLDLLLNIRPDQATLVPVTPGEITSDHGFDFKKDLTTLQEYSKILKKEKIRTSLFVETDPENLKLASLTGADRV
EFYTGPFAEKFDRSPQIGQECFESLYIPAAKAVLSQKMGINAGHDLDHDNLKIFSRLPGLQEVSIGHRLISRALETGIDQ
SVKDYLQALS
>Mature_250_residues
MKIKLSVNINKIATLRNSRGGNIPDLLYFADLVLRAGAEGITVHPREDERHIRKDDVFSLKEFIDSYNYKNNTKIEYNME
GEPSPRFLDLLLNIRPDQATLVPVTPGEITSDHGFDFKKDLTTLQEYSKILKKEKIRTSLFVETDPENLKLASLTGADRV
EFYTGPFAEKFDRSPQIGQECFESLYIPAAKAVLSQKMGINAGHDLDHDNLKIFSRLPGLQEVSIGHRLISRALETGIDQ
SVKDYLQALS

Specific function: Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate [H]

COG id: COG0854

COG function: function code H; Pyridoxal phosphate biosynthesis protein

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the PNP synthase family [H]

Homologues:

Organism=Escherichia coli, GI1788917, Length=242, Percent_Identity=34.297520661157, Blast_Score=140, Evalue=1e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR004569 [H]

Pfam domain/function: PF03740 PdxJ [H]

EC number: =2.6.99.2 [H]

Molecular weight: Translated: 28270; Mature: 28270

Theoretical pI: Translated: 6.26; Mature: 6.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIKLSVNINKIATLRNSRGGNIPDLLYFADLVLRAGAEGITVHPREDERHIRKDDVFSL
CEEEEEECHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCEECCCCCHHHCCHHHHHHH
KEFIDSYNYKNNTKIEYNMEGEPSPRFLDLLLNIRPDQATLVPVTPGEITSDHGFDFKKD
HHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCHHHH
LTTLQEYSKILKKEKIRTSLFVETDPENLKLASLTGADRVEFYTGPFAEKFDRSPQIGQE
HHHHHHHHHHHHHHHHHHEEEEEECCCCEEEEEECCCCCEEEECCCCHHHHCCCCCHHHH
CFESLYIPAAKAVLSQKMGINAGHDLDHDNLKIFSRLPGLQEVSIGHRLISRALETGIDQ
HHHHHCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHCCCH
SVKDYLQALS
HHHHHHHHCC
>Mature Secondary Structure
MKIKLSVNINKIATLRNSRGGNIPDLLYFADLVLRAGAEGITVHPREDERHIRKDDVFSL
CEEEEEECHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCEECCCCCHHHCCHHHHHHH
KEFIDSYNYKNNTKIEYNMEGEPSPRFLDLLLNIRPDQATLVPVTPGEITSDHGFDFKKD
HHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCHHHH
LTTLQEYSKILKKEKIRTSLFVETDPENLKLASLTGADRVEFYTGPFAEKFDRSPQIGQE
HHHHHHHHHHHHHHHHHHEEEEEECCCCEEEEEECCCCCEEEECCCCHHHHCCCCCHHHH
CFESLYIPAAKAVLSQKMGINAGHDLDHDNLKIFSRLPGLQEVSIGHRLISRALETGIDQ
HHHHHCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHCCCH
SVKDYLQALS
HHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA