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The map label for this gene is flhF [H]

Identifier: 116328493

GI number: 116328493

Start: 2143910

End: 2145211

Strand: Reverse

Name: flhF [H]

Synonym: LBL_1841

Alternate gene names: 116328493

Gene position: 2145211-2143910 (Counterclockwise)

Preceding gene: 116328494

Following gene: 116328492

Centisome position: 59.35

GC content: 42.63

Gene sequence:

>1302_bases
ATGGAATTCGCTAAAATCCGTGGTAAAAGTTACCAAGACTGTTTGATGGAAATGAAAATGAAATACGGTTCGGAAGCGAC
CGTGATCTCTCAAACCGTAGTTACCGAAGGTGGAGTGATGGGAACGGGGCTTCTTGCTAAGAAAATGATCGAAATTCAGA
TTGGGATTCCGGAAAAACAGGCTTCTCGTGAAAAGATAGAACGTAAACTTCAGGATCTAAAGTATCTTTTAAAACAAAAG
TCTTATGTTGCTCCGGAGAAAAAGAAAACACTCCAAACTTTAAAACCTCTTTCCAGGGCTTTGGAAGAAAAGGAAACGAC
TACTACCCCTGAGGATTCTTGGGAACTTGAAGAAGTCATAACTGAACCGGAAAGAGTCATCGGGCTTTCCTTTGAAAAGG
AACTTTTTGAAAGGAATCCCCTCTCTAAAAAAGAGACTTTCATTGTTCGAGGGAAAAAAGATTCTCCTTTGAGCAGATTG
GGAGAACGATTGGTTCGGGAAGGAATGAGCCAGGGTTATGTGGAAGAAGTTCTTTCTAAGATCGAAGAAAGGCTTTCTCC
GATTGATCAAGGACGTAATCACTCTGTTTCCGAAAGGGCAACTCAAGTGCTTGTCGAAAGGGTCAGTGTGGATCCGGACC
TTTTTCAAGGGACCGGGAAAAATCAAAGAAAAGTGGTTTTTCTCGTAGGACCTACAGGCTCCGGTAAAACGACAAGTATC
GCAAAACTCGCCGCAAAATATTTCCTACACATGGGGAGATCCGTGTCGCTTTATACGACGGATAATTATAGAATCGCCGC
GATCGAACAGCTCAAACGTTACGCAGACACAATGGGAATGCCGTTTTATCCGGTTAAAGACATAAAAAAATTCAAGGAAA
CTTTGGCCCGGGACGGTTCGGAATTGATCCTTATCGACACCGCGGGTTACAGTCATAGAAATCTCGAACAACTGGAAAGA
ATGCATTCGTTTCATTCTTGTTTCGGAGAAAGGGATTCGGTGGAAAATCTTCTTGTCCTTTCCGCTATTTCTTCCTACCA
TCATACGAACACGGTATTGAAAGCCTACGAGTCTTTAAACTATCGAAGAATTCTTCTCACAAAATTAGATGAGGCGGATT
TTTTAGGTAGTTTTCTCGAATTGGCCGATACATACTCTAAGAGTTTCACATACTTCAGCGTGGGTCAGGAAGTTCCTTTT
GACATTCTTCCTGCCGATAAAAATTTGATGGCTGAATGTGTGGTAGCTTCGGAGAAAATTGCTGAGCTGAGAGGAGAAGT
TTTCACCGTCACGGGGAGCTGA

Upstream 100 bases:

>100_bases
ACTCAAACTTCCTCAAACACAAACCGTGGGAGTAGAGGAAGAAGCATGAAATTATTGGAATATTCGATCTTTCTAAAGGG
AAAGGATCAGGGAGTTGAAA

Downstream 100 bases:

>100_bases
TCCGAAGCTCTGGAAGAGGTAAAGAATGGATCAGGCGGCTCATTTACGGAAACTCACCGAGGGAAATACGAGTCTAAAAG
TTCTGTCATCCAGAAAGCCC

Product: flagellar biosynthesis regulator FlhF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 433; Mature: 433

Protein sequence:

>433_residues
MEFAKIRGKSYQDCLMEMKMKYGSEATVISQTVVTEGGVMGTGLLAKKMIEIQIGIPEKQASREKIERKLQDLKYLLKQK
SYVAPEKKKTLQTLKPLSRALEEKETTTTPEDSWELEEVITEPERVIGLSFEKELFERNPLSKKETFIVRGKKDSPLSRL
GERLVREGMSQGYVEEVLSKIEERLSPIDQGRNHSVSERATQVLVERVSVDPDLFQGTGKNQRKVVFLVGPTGSGKTTSI
AKLAAKYFLHMGRSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSELILIDTAGYSHRNLEQLER
MHSFHSCFGERDSVENLLVLSAISSYHHTNTVLKAYESLNYRRILLTKLDEADFLGSFLELADTYSKSFTYFSVGQEVPF
DILPADKNLMAECVVASEKIAELRGEVFTVTGS

Sequences:

>Translated_433_residues
MEFAKIRGKSYQDCLMEMKMKYGSEATVISQTVVTEGGVMGTGLLAKKMIEIQIGIPEKQASREKIERKLQDLKYLLKQK
SYVAPEKKKTLQTLKPLSRALEEKETTTTPEDSWELEEVITEPERVIGLSFEKELFERNPLSKKETFIVRGKKDSPLSRL
GERLVREGMSQGYVEEVLSKIEERLSPIDQGRNHSVSERATQVLVERVSVDPDLFQGTGKNQRKVVFLVGPTGSGKTTSI
AKLAAKYFLHMGRSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSELILIDTAGYSHRNLEQLER
MHSFHSCFGERDSVENLLVLSAISSYHHTNTVLKAYESLNYRRILLTKLDEADFLGSFLELADTYSKSFTYFSVGQEVPF
DILPADKNLMAECVVASEKIAELRGEVFTVTGS
>Mature_433_residues
MEFAKIRGKSYQDCLMEMKMKYGSEATVISQTVVTEGGVMGTGLLAKKMIEIQIGIPEKQASREKIERKLQDLKYLLKQK
SYVAPEKKKTLQTLKPLSRALEEKETTTTPEDSWELEEVITEPERVIGLSFEKELFERNPLSKKETFIVRGKKDSPLSRL
GERLVREGMSQGYVEEVLSKIEERLSPIDQGRNHSVSERATQVLVERVSVDPDLFQGTGKNQRKVVFLVGPTGSGKTTSI
AKLAAKYFLHMGRSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSELILIDTAGYSHRNLEQLER
MHSFHSCFGERDSVENLLVLSAISSYHHTNTVLKAYESLNYRRILLTKLDEADFLGSFLELADTYSKSFTYFSVGQEVPF
DILPADKNLMAECVVASEKIAELRGEVFTVTGS

Specific function: Necessary for flagellar biosynthesis. May be involved in translocation of the flagellum [H]

COG id: COG1419

COG function: function code N; Flagellar GTP-binding protein

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein; Cytoplasmic side [H]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GTP-binding SRP family [H]

Homologues:

Organism=Escherichia coli, GI1788963, Length=180, Percent_Identity=28.3333333333333, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1789874, Length=211, Percent_Identity=27.9620853080569, Blast_Score=69, Evalue=8e-13,
Organism=Caenorhabditis elegans, GI17539958, Length=199, Percent_Identity=26.6331658291457, Blast_Score=67, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6325345, Length=191, Percent_Identity=28.7958115183246, Blast_Score=68, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR000897
- InterPro:   IPR020006 [H]

Pfam domain/function: PF00448 SRP54 [H]

EC number: NA

Molecular weight: Translated: 49038; Mature: 49038

Theoretical pI: Translated: 7.61; Mature: 7.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEFAKIRGKSYQDCLMEMKMKYGSEATVISQTVVTEGGVMGTGLLAKKMIEIQIGIPEKQ
CCCHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHEEEEEECCCHHH
ASREKIERKLQDLKYLLKQKSYVAPEKKKTLQTLKPLSRALEEKETTTTPEDSWELEEVI
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH
TEPERVIGLSFEKELFERNPLSKKETFIVRGKKDSPLSRLGERLVREGMSQGYVEEVLSK
CCHHHHCCCCHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCHHHHHHHHH
IEERLSPIDQGRNHSVSERATQVLVERVSVDPDLFQGTGKNQRKVVFLVGPTGSGKTTSI
HHHHHCHHHCCCCCCHHHHHHHHHHHHHCCCHHHHCCCCCCCCEEEEEECCCCCCCHHHH
AKLAAKYFLHMGRSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGS
HHHHHHHHHHCCCEEEEEECCCEEHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCC
ELILIDTAGYSHRNLEQLERMHSFHSCFGERDSVENLLVLSAISSYHHTNTVLKAYESLN
CEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
YRRILLTKLDEADFLGSFLELADTYSKSFTYFSVGQEVPFDILPADKNLMAECVVASEKI
CEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCEECCCCHHHHHHHHHHHHHH
AELRGEVFTVTGS
HHHCCCEEEEECC
>Mature Secondary Structure
MEFAKIRGKSYQDCLMEMKMKYGSEATVISQTVVTEGGVMGTGLLAKKMIEIQIGIPEKQ
CCCHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHEEEEEECCCHHH
ASREKIERKLQDLKYLLKQKSYVAPEKKKTLQTLKPLSRALEEKETTTTPEDSWELEEVI
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH
TEPERVIGLSFEKELFERNPLSKKETFIVRGKKDSPLSRLGERLVREGMSQGYVEEVLSK
CCHHHHCCCCHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCHHHHHHHHH
IEERLSPIDQGRNHSVSERATQVLVERVSVDPDLFQGTGKNQRKVVFLVGPTGSGKTTSI
HHHHHCHHHCCCCCCHHHHHHHHHHHHHCCCHHHHCCCCCCCCEEEEEECCCCCCCHHHH
AKLAAKYFLHMGRSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGS
HHHHHHHHHHCCCEEEEEECCCEEHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCC
ELILIDTAGYSHRNLEQLERMHSFHSCFGERDSVENLLVLSAISSYHHTNTVLKAYESLN
CEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
YRRILLTKLDEADFLGSFLELADTYSKSFTYFSVGQEVPFDILPADKNLMAECVVASEKI
CEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCEECCCCHHHHHHHHHHHHHH
AELRGEVFTVTGS
HHHCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9252185 [H]