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The map label for this gene is yoaA [H]

Identifier: 116328483

GI number: 116328483

Start: 2134156

End: 2136132

Strand: Direct

Name: yoaA [H]

Synonym: LBL_1831

Alternate gene names: 116328483

Gene position: 2134156-2136132 (Clockwise)

Preceding gene: 116328482

Following gene: 116328484

Centisome position: 59.05

GC content: 44.56

Gene sequence:

>1977_bases
TTGAATCGTTCATTAGAATACTTTGATAAACTTTCCGCGACCTGGAACGATTTCGAACCCAGAAAAGGCCAGATTCAACT
TTCCCAAAAGATAGAAGATTCCCTCTTTCAAGGAACCCATTTGATTGCAGAAGCGGGAACGGGAGTCGGTAAGTCTCTCG
CGTATCTGATTCCCGCAGCGCTTGCCTCGATCGAAACAGAAGAACCCGTCGTCATTTCCACAGAAACTAAATCCCTTCAA
CAGCAACTCTTTTTAAAAGACATTCCGCTGGTTTCCAAAATCTTAGGAACGGATCTAAAAGCGGAAATCGCAATGGGCTC
CTCCAACTATGTGTGCAAAAGAAAGATGAATCATGTGTTGCGGGACGGAACCTTCGGCCCGGAGATGATTCCTCATTTGG
ATTCTTTCAACCGATGGATTAAAACCACAGAGTCCGGAAGAAAACAGGAATTTATGGGAACGGCTTCCTACGATTTTTGG
AACAAAGTCACGAGAGAGGCGGATAATTGCCTCGGAAGAAATTGTCCCAACTTTTCTCATTCCTATTACTTTTTAGAAAG
GGAAAAATGGAAACGTTGTAACATTCTAATCGTAAACCATCACCTTTTGGCGGCGCATATCGCGAGTGACTTCAATATTC
TTCCCGAATTCAATCGAGTGATTTTGGACGAAGCGCATAACTTTCCTGACATCATCGGTTCTTCTTTTCGCCGAGAAGTT
CGTTCTCAGGAAATCCAAAAACTTCTACAACAGATCTGGCTTCCGAATAAAAATACGGGGGTTGCAGTTTCGATTTCCTC
GAACATTCTCAAGGATTTAGCGACAAAGGCGGGTGAAACTCTAACCGCTTTTTTCAACGCACTTTCCGGGGAAGTCCCTC
TGAATTTTTATAGTCCTCAAAGGATCAAACGACCTCTAAAGTTGGATCGAGGCGAATTTGCCGCGGTACTTGCCGAGATC
GCCGAAATTCTTCAGAAACATCTTTCCAAATTATCCAAGGATAACGAAGATATCGCGGAAAGAGAATCCGCCCTCGCCTT
AGAGATGTTAGCCGGAAGGATCAACGAAATTGCAACCGGTCTCGAAACTTTTCGCCAAGTGGACGATCCGAATCTTGTGT
ATTGGATCGAACCTCCCGATCAGAGTTCAAAAGAGATCTATTATAAAATTTGCATGGAACCTTTAAGTCCGAGCGAGATT
ATTCGCGACCTATTCGCCTCTCGGATGGAGTCGATCGTGTTTACGTCGGCAACCCTTTCCACATCCGGAAACGATTTTAA
ATACTTTCAAAAAAAAATCGGGGACTTACAGGCTTCTAATCTTACGGTTCCTTCTCCTTTTCCGTATCAAAAGAACGCTC
TTTTGTACGTACCGAAGGAAATTCGGGATCCGGTAGGAGATCCGGACGGCTATCATGCGGATCTTGCTAAACAAATCCTT
TGGCTCATCGAACTGACGCGGGGGAATACATTTGTTCTGTTTACTTCTTTTAAGTCCTTAAAACTGGTTTACGAAGCGAT
TTGTCCCCATACCACTCTTCCACTATTCTCCCAATCCGATCTGGGACCGGACGGGGCCAAACAAATGTATCTCGAAACCC
CCAACAGTGTACTTTTCGGAGTTTCTACGTTTTGGCAGGGAATCGACATCCGAGGAGACAAACTCAAATCCGTCGTCATC
GCCAAACTTCCGTTTCAGGTTCCGAACGATCCGGTCTTGGAAACCAAAAGCGAACGACTAAAAGAATCCGGCGGGAATCC
TTTTGCGGAGTTACAACTTCCATACGCTTGCACGGTTCTCAAACAAGGATTCGGACGTTTGATCCGTTCCGGTACGGACA
CAGGGATCGTTTCTATTTTGGATCCTAGAATGTTCACAAAATCTTATGGAAAGGATCTTTTGAAATCCCTTCCTCCCGCT
AAATTGATTCAGAACCGGGAAGATTTAAAGAGAGAATTCGCTAATCTGCCGAAATAA

Upstream 100 bases:

>100_bases
GTTTGACTTGGCAAGGTGTTTCGATCATGACTATTTCTCTGCTTTTGGTGAGTAGCCTTACCGTATTCTGCATTTTTAAA
CTTTTTAAAACCAGAAACCA

Downstream 100 bases:

>100_bases
ATAGAAGACGTACTTCCGTTTCTTGAGAATCTAAATGAATTTCACAGTCCGATTTTTCCCACTCCTTCTTTTTTGGATCC
CCATTCAAAACCCGTTCTCT

Product: DNA helicase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 658; Mature: 658

Protein sequence:

>658_residues
MNRSLEYFDKLSATWNDFEPRKGQIQLSQKIEDSLFQGTHLIAEAGTGVGKSLAYLIPAALASIETEEPVVISTETKSLQ
QQLFLKDIPLVSKILGTDLKAEIAMGSSNYVCKRKMNHVLRDGTFGPEMIPHLDSFNRWIKTTESGRKQEFMGTASYDFW
NKVTREADNCLGRNCPNFSHSYYFLEREKWKRCNILIVNHHLLAAHIASDFNILPEFNRVILDEAHNFPDIIGSSFRREV
RSQEIQKLLQQIWLPNKNTGVAVSISSNILKDLATKAGETLTAFFNALSGEVPLNFYSPQRIKRPLKLDRGEFAAVLAEI
AEILQKHLSKLSKDNEDIAERESALALEMLAGRINEIATGLETFRQVDDPNLVYWIEPPDQSSKEIYYKICMEPLSPSEI
IRDLFASRMESIVFTSATLSTSGNDFKYFQKKIGDLQASNLTVPSPFPYQKNALLYVPKEIRDPVGDPDGYHADLAKQIL
WLIELTRGNTFVLFTSFKSLKLVYEAICPHTTLPLFSQSDLGPDGAKQMYLETPNSVLFGVSTFWQGIDIRGDKLKSVVI
AKLPFQVPNDPVLETKSERLKESGGNPFAELQLPYACTVLKQGFGRLIRSGTDTGIVSILDPRMFTKSYGKDLLKSLPPA
KLIQNREDLKREFANLPK

Sequences:

>Translated_658_residues
MNRSLEYFDKLSATWNDFEPRKGQIQLSQKIEDSLFQGTHLIAEAGTGVGKSLAYLIPAALASIETEEPVVISTETKSLQ
QQLFLKDIPLVSKILGTDLKAEIAMGSSNYVCKRKMNHVLRDGTFGPEMIPHLDSFNRWIKTTESGRKQEFMGTASYDFW
NKVTREADNCLGRNCPNFSHSYYFLEREKWKRCNILIVNHHLLAAHIASDFNILPEFNRVILDEAHNFPDIIGSSFRREV
RSQEIQKLLQQIWLPNKNTGVAVSISSNILKDLATKAGETLTAFFNALSGEVPLNFYSPQRIKRPLKLDRGEFAAVLAEI
AEILQKHLSKLSKDNEDIAERESALALEMLAGRINEIATGLETFRQVDDPNLVYWIEPPDQSSKEIYYKICMEPLSPSEI
IRDLFASRMESIVFTSATLSTSGNDFKYFQKKIGDLQASNLTVPSPFPYQKNALLYVPKEIRDPVGDPDGYHADLAKQIL
WLIELTRGNTFVLFTSFKSLKLVYEAICPHTTLPLFSQSDLGPDGAKQMYLETPNSVLFGVSTFWQGIDIRGDKLKSVVI
AKLPFQVPNDPVLETKSERLKESGGNPFAELQLPYACTVLKQGFGRLIRSGTDTGIVSILDPRMFTKSYGKDLLKSLPPA
KLIQNREDLKREFANLPK
>Mature_658_residues
MNRSLEYFDKLSATWNDFEPRKGQIQLSQKIEDSLFQGTHLIAEAGTGVGKSLAYLIPAALASIETEEPVVISTETKSLQ
QQLFLKDIPLVSKILGTDLKAEIAMGSSNYVCKRKMNHVLRDGTFGPEMIPHLDSFNRWIKTTESGRKQEFMGTASYDFW
NKVTREADNCLGRNCPNFSHSYYFLEREKWKRCNILIVNHHLLAAHIASDFNILPEFNRVILDEAHNFPDIIGSSFRREV
RSQEIQKLLQQIWLPNKNTGVAVSISSNILKDLATKAGETLTAFFNALSGEVPLNFYSPQRIKRPLKLDRGEFAAVLAEI
AEILQKHLSKLSKDNEDIAERESALALEMLAGRINEIATGLETFRQVDDPNLVYWIEPPDQSSKEIYYKICMEPLSPSEI
IRDLFASRMESIVFTSATLSTSGNDFKYFQKKIGDLQASNLTVPSPFPYQKNALLYVPKEIRDPVGDPDGYHADLAKQIL
WLIELTRGNTFVLFTSFKSLKLVYEAICPHTTLPLFSQSDLGPDGAKQMYLETPNSVLFGVSTFWQGIDIRGDKLKSVVI
AKLPFQVPNDPVLETKSERLKESGGNPFAELQLPYACTVLKQGFGRLIRSGTDTGIVSILDPRMFTKSYGKDLLKSLPPA
KLIQNREDLKREFANLPK

Specific function: Unknown

COG id: COG1199

COG function: function code KL; Rad3-related DNA helicases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 helicase ATP-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788110, Length=633, Percent_Identity=31.911532385466, Blast_Score=310, Evalue=3e-85,
Organism=Escherichia coli, GI1787018, Length=683, Percent_Identity=26.9399707174231, Blast_Score=182, Evalue=8e-47,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014001
- InterPro:   IPR010614
- InterPro:   IPR014013
- InterPro:   IPR006555
- InterPro:   IPR006935 [H]

Pfam domain/function: PF06733 DEAD_2; PF04851 ResIII [H]

EC number: =3.6.4.12 [H]

Molecular weight: Translated: 74218; Mature: 74218

Theoretical pI: Translated: 7.09; Mature: 7.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRSLEYFDKLSATWNDFEPRKGQIQLSQKIEDSLFQGTHLIAEAGTGVGKSLAYLIPAA
CCCCHHHHHHHCCCCCCCCCCCCCEEHHHHHHHHHHHCHHHHHHCCCCCHHHHHHHHHHH
LASIETEEPVVISTETKSLQQQLFLKDIPLVSKILGTDLKAEIAMGSSNYVCKRKMNHVL
HHHCCCCCCEEEECCHHHHHHHHHHHHCHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHH
RDGTFGPEMIPHLDSFNRWIKTTESGRKQEFMGTASYDFWNKVTREADNCLGRNCPNFSH
HCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCC
SYYFLEREKWKRCNILIVNHHLLAAHIASDFNILPEFNRVILDEAHNFPDIIGSSFRREV
CEEEEECCCCCCCCEEEEECHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHH
RSQEIQKLLQQIWLPNKNTGVAVSISSNILKDLATKAGETLTAFFNALSGEVPLNFYSPQ
HHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCHH
RIKRPLKLDRGEFAAVLAEIAEILQKHLSKLSKDNEDIAERESALALEMLAGRINEIATG
HHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
LETFRQVDDPNLVYWIEPPDQSSKEIYYKICMEPLSPSEIIRDLFASRMESIVFTSATLS
HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHEEEEEEC
TSGNDFKYFQKKIGDLQASNLTVPSPFPYQKNALLYVPKEIRDPVGDPDGYHADLAKQIL
CCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCHHHCCCCCCCCCCHHHHHHHHH
WLIELTRGNTFVLFTSFKSLKLVYEAICPHTTLPLFSQSDLGPDGAKQMYLETPNSVLFG
HHHEECCCCEEEEEECHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEE
VSTFWQGIDIRGDKLKSVVIAKLPFQVPNDPVLETKSERLKESGGNPFAELQLPYACTVL
HHHHHCCCCCCCHHHHHEEEEECCCCCCCCCCCCCHHHHHHHCCCCCEEEEECCHHHHHH
KQGFGRLIRSGTDTGIVSILDPRMFTKSYGKDLLKSLPPAKLIQNREDLKREFANLPK
HHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHCCCC
>Mature Secondary Structure
MNRSLEYFDKLSATWNDFEPRKGQIQLSQKIEDSLFQGTHLIAEAGTGVGKSLAYLIPAA
CCCCHHHHHHHCCCCCCCCCCCCCEEHHHHHHHHHHHCHHHHHHCCCCCHHHHHHHHHHH
LASIETEEPVVISTETKSLQQQLFLKDIPLVSKILGTDLKAEIAMGSSNYVCKRKMNHVL
HHHCCCCCCEEEECCHHHHHHHHHHHHCHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHH
RDGTFGPEMIPHLDSFNRWIKTTESGRKQEFMGTASYDFWNKVTREADNCLGRNCPNFSH
HCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCC
SYYFLEREKWKRCNILIVNHHLLAAHIASDFNILPEFNRVILDEAHNFPDIIGSSFRREV
CEEEEECCCCCCCCEEEEECHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHH
RSQEIQKLLQQIWLPNKNTGVAVSISSNILKDLATKAGETLTAFFNALSGEVPLNFYSPQ
HHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCHH
RIKRPLKLDRGEFAAVLAEIAEILQKHLSKLSKDNEDIAERESALALEMLAGRINEIATG
HHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
LETFRQVDDPNLVYWIEPPDQSSKEIYYKICMEPLSPSEIIRDLFASRMESIVFTSATLS
HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHEEEEEEC
TSGNDFKYFQKKIGDLQASNLTVPSPFPYQKNALLYVPKEIRDPVGDPDGYHADLAKQIL
CCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCHHHCCCCCCCCCCHHHHHHHHH
WLIELTRGNTFVLFTSFKSLKLVYEAICPHTTLPLFSQSDLGPDGAKQMYLETPNSVLFG
HHHEECCCCEEEEEECHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEE
VSTFWQGIDIRGDKLKSVVIAKLPFQVPNDPVLETKSERLKESGGNPFAELQLPYACTVL
HHHHHCCCCCCCHHHHHEEEEECCCCCCCCCCCCCHHHHHHHCCCCCEEEEECCHHHHHH
KQGFGRLIRSGTDTGIVSILDPRMFTKSYGKDLLKSLPPAKLIQNREDLKREFANLPK
HHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097040; 9278503 [H]