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The map label for this gene is tolC

Identifier: 116328432

GI number: 116328432

Start: 2067294

End: 2068691

Strand: Reverse

Name: tolC

Synonym: LBL_1773

Alternate gene names: NA

Gene position: 2068691-2067294 (Counterclockwise)

Preceding gene: 116328433

Following gene: 116328431

Centisome position: 57.23

GC content: 43.78

Gene sequence:

>1398_bases
ATGAGAAAGATTTTTACGTTTTTACTTCTTTTATGGATGGTTCCGATTCTATCGGAAGGGGGCAAGACCGGAGCCGATCC
GGGATTGGGAATTCCCGAATCTCCGAACCAGTCTGAAAATCCGATCCAACGCGAAGTGGTTGCAACACCAGACAAAGAAA
GAACCCTGGATTTGAAAACCGCGGAGGAGAAACTCTGGAAAAACAACTTACTTCTCCTTGCTTCACGCTTTAACATAGAC
GCCCGCAAGGCCGGAATCGAACAAGCCGGACTTTATGCGAATCCGAACATCTTCATCGATCAGAGTATTTATGCGGAGCC
GACGCAACGTTATTTCGATTTTACCCGCTCGGGTCAAACCGTCGTTCAGATCCAACAGTTATTTTTGCTCGGAGGTAAGA
TCGGGAAAAGAGTTCGAGTCGCCGAACTCAACGCGAGAATGGGGGAACAGGAGTTTTATGATCTTGCGCGGGAACTCGTA
ACGAAACTCAGAAAACTTTTCTATGCGATCTACTACTATAGACAAGCGATTTCCTTTTACGATCAGAGTTTGGAAGCCTT
GGGAAGAACGGTTACTTCCGCGGAAATGGGTTATAAAAGAAGGGCGATTCTTCAAGCGGAAGTACTTCGTCTAAAAGCCC
TTTACTTCTTTCTTAAAAAAGAAAGAGAAGAATTGAATATTCGAATTTTGGAAAGAGAAGCTGATCTTCGTGTTTTGTTA
AACGACGATTCGTTCCGAAGCTCGGACGTGAAAATCGTTCCGATGATCGTTGAAAATCAACTCGACAATCTGGAACCGGG
AAAGTTGAAAAGGGACGAACTCTTGGAACTTGCCCGTAATAAAAGGCCGGATCTTAAAAAAGCGATTCAGGCTCTTCGAT
ACGAAGAAGCCAACTTGGAATTACAACACGCAAATGCGATTCCTGATCTTGCTTTCGGTCCGATGTACAATAGAGGAGGA
ACGGCCTTCCAAAACTATTGGGGAATCACTGCTCAGTTGAATATTCCGATCTTTGATAGAAACCAGGGAAACATCAAAGC
GTCGGAAAAAGCCATTCTTTCCAGAAAACAGGAACTCAAAAACACTCTTTTGGAAGTGGAGAACGAAGTCGCCGTTTCCA
TCGAAACCGCGAGACTCAAGGACGAACTTTACAAAAAGTTCAGAAACACGTATACGAAGGAATACACGGATCTTTCCAAG
GACATGATTCTCAGTTACGAAAAACGTTATATTACGATATCGGAATTTACGGATTTTTTCGAAACCTACTGTTCCAGCGT
TGTGGAAATGCTAAAACTGCAAACCGATCGAATGGACGCGATAGAAGGAGTTAATTTCTCCGTAGGGCAGGGAGTTCTTA
TTCCGAAATTCTCTGATCCTGTTACGGAAGAAAAGTGA

Upstream 100 bases:

>100_bases
TTTCGTCACGAATTGGATTCGTACGCAAGGAAAAGGGAAAATAAATGCAAACGCGTAGAATTGTACACTGGACCAGCAAA
CAATCATTCTTGAGAAGCCT

Downstream 100 bases:

>100_bases
GGAAGCCGATATGAAGATACATTTTACTAGAAGAACACTTTTAATCGCCGGAGCGGCCGCAGTCATCGCAATCGTTTCCA
TTGCAATCTTGGCTTTGTCC

Product: TolC Outer membrane protein

Products: NA

Alternate protein names: Cation Efflux System Protein CzcC; Outer Membrane Protein; Cation Efflux-Related Outer Membrane Exported Protein; Heavy Metal Efflux Pump; Outer Membrane Protein lC; Cation Efflux System Protein; LC-Related Efflux Protein; LC Outer Membrane Protein

Number of amino acids: Translated: 465; Mature: 465

Protein sequence:

>465_residues
MRKIFTFLLLLWMVPILSEGGKTGADPGLGIPESPNQSENPIQREVVATPDKERTLDLKTAEEKLWKNNLLLLASRFNID
ARKAGIEQAGLYANPNIFIDQSIYAEPTQRYFDFTRSGQTVVQIQQLFLLGGKIGKRVRVAELNARMGEQEFYDLARELV
TKLRKLFYAIYYYRQAISFYDQSLEALGRTVTSAEMGYKRRAILQAEVLRLKALYFFLKKEREELNIRILEREADLRVLL
NDDSFRSSDVKIVPMIVENQLDNLEPGKLKRDELLELARNKRPDLKKAIQALRYEEANLELQHANAIPDLAFGPMYNRGG
TAFQNYWGITAQLNIPIFDRNQGNIKASEKAILSRKQELKNTLLEVENEVAVSIETARLKDELYKKFRNTYTKEYTDLSK
DMILSYEKRYITISEFTDFFETYCSSVVEMLKLQTDRMDAIEGVNFSVGQGVLIPKFSDPVTEEK

Sequences:

>Translated_465_residues
MRKIFTFLLLLWMVPILSEGGKTGADPGLGIPESPNQSENPIQREVVATPDKERTLDLKTAEEKLWKNNLLLLASRFNID
ARKAGIEQAGLYANPNIFIDQSIYAEPTQRYFDFTRSGQTVVQIQQLFLLGGKIGKRVRVAELNARMGEQEFYDLARELV
TKLRKLFYAIYYYRQAISFYDQSLEALGRTVTSAEMGYKRRAILQAEVLRLKALYFFLKKEREELNIRILEREADLRVLL
NDDSFRSSDVKIVPMIVENQLDNLEPGKLKRDELLELARNKRPDLKKAIQALRYEEANLELQHANAIPDLAFGPMYNRGG
TAFQNYWGITAQLNIPIFDRNQGNIKASEKAILSRKQELKNTLLEVENEVAVSIETARLKDELYKKFRNTYTKEYTDLSK
DMILSYEKRYITISEFTDFFETYCSSVVEMLKLQTDRMDAIEGVNFSVGQGVLIPKFSDPVTEEK
>Mature_465_residues
MRKIFTFLLLLWMVPILSEGGKTGADPGLGIPESPNQSENPIQREVVATPDKERTLDLKTAEEKLWKNNLLLLASRFNID
ARKAGIEQAGLYANPNIFIDQSIYAEPTQRYFDFTRSGQTVVQIQQLFLLGGKIGKRVRVAELNARMGEQEFYDLARELV
TKLRKLFYAIYYYRQAISFYDQSLEALGRTVTSAEMGYKRRAILQAEVLRLKALYFFLKKEREELNIRILEREADLRVLL
NDDSFRSSDVKIVPMIVENQLDNLEPGKLKRDELLELARNKRPDLKKAIQALRYEEANLELQHANAIPDLAFGPMYNRGG
TAFQNYWGITAQLNIPIFDRNQGNIKASEKAILSRKQELKNTLLEVENEVAVSIETARLKDELYKKFRNTYTKEYTDLSK
DMILSYEKRYITISEFTDFFETYCSSVVEMLKLQTDRMDAIEGVNFSVGQGVLIPKFSDPVTEEK

Specific function: Unknown

COG id: COG1538

COG function: function code MU; Outer membrane protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 53645; Mature: 53645

Theoretical pI: Translated: 7.33; Mature: 7.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKIFTFLLLLWMVPILSEGGKTGADPGLGIPESPNQSENPIQREVVATPDKERTLDLKT
CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEECHHH
AEEKLWKNNLLLLASRFNIDARKAGIEQAGLYANPNIFIDQSIYAEPTQRYFDFTRSGQT
HHHHHHCCCEEEEEECCCCHHHHCCHHHCCCCCCCCEEECCCCCCCHHHHHHHHHCCCCH
VVQIQQLFLLGGKIGKRVRVAELNARMGEQEFYDLARELVTKLRKLFYAIYYYRQAISFY
HHHHHHHHHHHHHCCCEEEEEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DQSLEALGRTVTSAEMGYKRRAILQAEVLRLKALYFFLKKEREELNIRILEREADLRVLL
HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEEE
NDDSFRSSDVKIVPMIVENQLDNLEPGKLKRDELLELARNKRPDLKKAIQALRYEEANLE
CCCCCCCCCCEEEEEEHHCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHCCCE
LQHANAIPDLAFGPMYNRGGTAFQNYWGITAQLNIPIFDRNQGNIKASEKAILSRKQELK
EEECCCCCCCCCCCCCCCCCCHHHHHCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHH
NTLLEVENEVAVSIETARLKDELYKKFRNTYTKEYTDLSKDMILSYEKRYITISEFTDFF
HHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEHHHHHHHH
ETYCSSVVEMLKLQTDRMDAIEGVNFSVGQGVLIPKFSDPVTEEK
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCC
>Mature Secondary Structure
MRKIFTFLLLLWMVPILSEGGKTGADPGLGIPESPNQSENPIQREVVATPDKERTLDLKT
CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEECHHH
AEEKLWKNNLLLLASRFNIDARKAGIEQAGLYANPNIFIDQSIYAEPTQRYFDFTRSGQT
HHHHHHCCCEEEEEECCCCHHHHCCHHHCCCCCCCCEEECCCCCCCHHHHHHHHHCCCCH
VVQIQQLFLLGGKIGKRVRVAELNARMGEQEFYDLARELVTKLRKLFYAIYYYRQAISFY
HHHHHHHHHHHHHCCCEEEEEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DQSLEALGRTVTSAEMGYKRRAILQAEVLRLKALYFFLKKEREELNIRILEREADLRVLL
HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEEE
NDDSFRSSDVKIVPMIVENQLDNLEPGKLKRDELLELARNKRPDLKKAIQALRYEEANLE
CCCCCCCCCCEEEEEEHHCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHCCCE
LQHANAIPDLAFGPMYNRGGTAFQNYWGITAQLNIPIFDRNQGNIKASEKAILSRKQELK
EEECCCCCCCCCCCCCCCCCCHHHHHCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHH
NTLLEVENEVAVSIETARLKDELYKKFRNTYTKEYTDLSKDMILSYEKRYITISEFTDFF
HHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEHHHHHHHH
ETYCSSVVEMLKLQTDRMDAIEGVNFSVGQGVLIPKFSDPVTEEK
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA