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The map label for this gene is ylcD [C]

Identifier: 116328431

GI number: 116328431

Start: 2066291

End: 2067283

Strand: Reverse

Name: ylcD [C]

Synonym: LBL_1772

Alternate gene names: 116328431

Gene position: 2067283-2066291 (Counterclockwise)

Preceding gene: 116328432

Following gene: 116328430

Centisome position: 57.2

GC content: 46.73

Gene sequence:

>993_bases
ATGAAGATACATTTTACTAGAAGAACACTTTTAATCGCCGGAGCGGCCGCAGTCATCGCAATCGTTTCCATTGCAATCTT
GGCTTTGTCCAAAAAAAATAAGCAATCGATCTTGCCTCCGAGTAAAGCGATCGTTCACGACAAAGGGGAATGGATCGAGT
TTAAGGAAAACAGCCCGGGCCTCGAAATCATCAAAACTTCACAAATCGGAAAAGAAGGCGAGTTCGTCGAGGTGGAAGCT
CCCGCGCGTTTGATCGCTTCGACTTCTCCTTCCATGTCGGGTGGAGAAAAAATCATACTTTTCGAATCCGCGGATTTGAA
CGACCTCTACGTAGGCTATATTCATTCTAAGAATAGCTTGAATCGTTCCAGAAAGAATCTCGAGCGTATCAAGGATATGT
TCAAACACCGCGTCGCGACGGAAAAGGATTTGATCGAAGCGGAAACCAACGCGGCCGAACTTGCCGAGTTCGAAGGAAAA
CTCAGAGCGGTCGGTTTGAATCCGAACGAACTTAGGGGGGCGGGCGCTCAGAGCGCTTGGATCATCTGCGACGTTCCCGA
ATCCCAACTTCAAAGTTTGAAAAAAGGAAAAAAGGTAAACCTGAAATTCTCCAGTTTTCCGGAAGCGAATTGGGTCGGAG
TCGCGGAAGCTCTCGGCGATAACGTGGATCCGATGACCAGAACGGTTAAGGTTAGAATTCTCATTCGAAACGAAAATTAC
GTTTTAAAACCGGGTATGTTCGCGACGGTACGTTTTCCGGAAGATCGTAAAGGCGACACGGTCATCGTTCCGTTTACTTC
CATCATTACCGTGGAAGGTAAAAATTACGTTTTTGTGGAAGAAGCTCCGAGAGAATTTTACAAACGGGAAGTCGTTCTCG
GAACCTCCGGCGAAGATCGTGTAACCATTGTCGAAGGTCTGACAAAGGGTGATAAGGTCGTCGTTGAAAGGAACCATCTT
ACTCAAAGGACTCAGCTTCGGTTTTTAACATGA

Upstream 100 bases:

>100_bases
CGAATGGACGCGATAGAAGGAGTTAATTTCTCCGTAGGGCAGGGAGTTCTTATTCCGAAATTCTCTGATCCTGTTACGGA
AGAAAAGTGAGGAAGCCGAT

Downstream 100 bases:

>100_bases
AACAATTCAAATTCTTAGTCCTACTCATACTATTAGGGTTTTTGAATGTTTCGATTTTGGCGCAGAGTCAGAATCCGAAA
TACGATTCGAATTCCAAGGA

Product: AcrA-related membrane protein

Products: NA

Alternate protein names: RND Family Efflux Transporter MFP Subunit; Secretion Protein HlyD; Cation Efflux System Protein; Cation Efflux System Protein CzcB; HlyD Family Secretion Protein; Membrane-Fusion Protein; Cation Efflux System Transmembrane Protein; Metal Transport-Related Exported Protein; Cation Efflux Protein; CzcB Family Heavy Metal RND Efflux Membrane Fusion Protein; Chemiosmotic Efflux System C Protein B; Heavy Metal Efflux Pump; Cation Efflux System Protein CusB; CzcB Family Heavy Metal Efflux Protein; Efflux Transporter Rnd Family Mfp Subunit; RND Efflux Membrane Fusion Protein; Heavy Metal Efflux Transporter RND Family MFP Subunit; Heavy Metal Resistance Protein Czcb; Cation Efflux System Protein CzcB-Like Protein; H+-Transporting Two-Sector ATPase Delta Subunit; Acriflavine Resistance Protein A; AcrA-Related Membrane Protein; Chemiosmotic Efflux System B Protein B; Silver Efflux Protein; Cation Eflux System Protein; Cation Efflux Transmembrane Protein; Copper/Silver Resistance Periplasmic Protein; Heavy Metal Efflux System Membrane Fusion Protein; Heavy Metal Efflux Pump Czcb Family; Cation/Multidrug Efflux System Mebrane-Fusion Component; Efflux System Protein; Secretion Protein HlyD Family Protein; Heavy Metal Cation Tricomponent Efflux Protein HmxB; Cobalt-Zinc-Cadmium Resistance Protein CzcB; Copper/Silver Efflux System Protein Cusb; Membrane-Fusion Protein RND-Like Efflux System Component; Membrane Fusion Protein; Cobalt-Zinc-Cadmium Resistance Membrane-Fusion Protein; Cation Efflux System; RND Family Efflux Pump Membrane Fusion Protein; Co/Zn/Cd Efflux System Membrane Fusion Protein; Chemiosmotic Efflux System Protein B-Like Protein; Heavy Metal Efflux System Protein; Auxiliary Transport Protein MFP Family; Cation Efflux System Membrane Protein; Multidrug Efflux Transporter Membrane Fusion Protein; Heavy Metal Efflux System Periplasmic Protein; Cation Transporter Transmembrane Protein; Cd(II)/Pb(II)-Responsive Transcriptional Regulator; Heavy Metal RND Efflux Membrane Fusion Protein; Membrane Fusion Protein SilB; RND-Type Efflux Transporter Membrane Fusion Protein; Copper/Silver Efflux System Protein CusB; Copper/Silver Efflux System Membrane Fusion Protein; Multidrug Efflux Pump; RND Efflux Membrane-Fusionprotein; Nickel-Cobalt Resistance Protein; Copper Efflux System Protein

Number of amino acids: Translated: 330; Mature: 330

Protein sequence:

>330_residues
MKIHFTRRTLLIAGAAAVIAIVSIAILALSKKNKQSILPPSKAIVHDKGEWIEFKENSPGLEIIKTSQIGKEGEFVEVEA
PARLIASTSPSMSGGEKIILFESADLNDLYVGYIHSKNSLNRSRKNLERIKDMFKHRVATEKDLIEAETNAAELAEFEGK
LRAVGLNPNELRGAGAQSAWIICDVPESQLQSLKKGKKVNLKFSSFPEANWVGVAEALGDNVDPMTRTVKVRILIRNENY
VLKPGMFATVRFPEDRKGDTVIVPFTSIITVEGKNYVFVEEAPREFYKREVVLGTSGEDRVTIVEGLTKGDKVVVERNHL
TQRTQLRFLT

Sequences:

>Translated_330_residues
MKIHFTRRTLLIAGAAAVIAIVSIAILALSKKNKQSILPPSKAIVHDKGEWIEFKENSPGLEIIKTSQIGKEGEFVEVEA
PARLIASTSPSMSGGEKIILFESADLNDLYVGYIHSKNSLNRSRKNLERIKDMFKHRVATEKDLIEAETNAAELAEFEGK
LRAVGLNPNELRGAGAQSAWIICDVPESQLQSLKKGKKVNLKFSSFPEANWVGVAEALGDNVDPMTRTVKVRILIRNENY
VLKPGMFATVRFPEDRKGDTVIVPFTSIITVEGKNYVFVEEAPREFYKREVVLGTSGEDRVTIVEGLTKGDKVVVERNHL
TQRTQLRFLT
>Mature_330_residues
MKIHFTRRTLLIAGAAAVIAIVSIAILALSKKNKQSILPPSKAIVHDKGEWIEFKENSPGLEIIKTSQIGKEGEFVEVEA
PARLIASTSPSMSGGEKIILFESADLNDLYVGYIHSKNSLNRSRKNLERIKDMFKHRVATEKDLIEAETNAAELAEFEGK
LRAVGLNPNELRGAGAQSAWIICDVPESQLQSLKKGKKVNLKFSSFPEANWVGVAEALGDNVDPMTRTVKVRILIRNENY
VLKPGMFATVRFPEDRKGDTVIVPFTSIITVEGKNYVFVEEAPREFYKREVVLGTSGEDRVTIVEGLTKGDKVVVERNHL
TQRTQLRFLT

Specific function: Possible component of copper transport system [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 36717; Mature: 36717

Theoretical pI: Translated: 9.64; Mature: 9.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIHFTRRTLLIAGAAAVIAIVSIAILALSKKNKQSILPPSKAIVHDKGEWIEFKENSPG
CEEEEEEEEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCEEEEECCCCC
LEIIKTSQIGKEGEFVEVEAPARLIASTSPSMSGGEKIILFESADLNDLYVGYIHSKNSL
EEEEEECCCCCCCCEEEEECCCEEEECCCCCCCCCCEEEEEECCCCCCEEEEEEECCCHH
NRSRKNLERIKDMFKHRVATEKDLIEAETNAAELAEFEGKLRAVGLNPNELRGAGAQSAW
HHHHHHHHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHCCCEEEECCCHHHHCCCCCCCEE
IICDVPESQLQSLKKGKKVNLKFSSFPEANWVGVAEALGDNVDPMTRTVKVRILIRNENY
EEEECCHHHHHHHHCCCEEEEEECCCCCCCCEEHHHHHCCCCCCCEEEEEEEEEEECCCE
VLKPGMFATVRFPEDRKGDTVIVPFTSIITVEGKNYVFVEEAPREFYKREVVLGTSGEDR
EECCCEEEEEECCCCCCCCEEEEEEEEEEEECCCCEEEEECCHHHHHCEEEEEECCCCCC
VTIVEGLTKGDKVVVERNHLTQRTQLRFLT
EEEEECCCCCCEEEEECCCCCCCCEEEECC
>Mature Secondary Structure
MKIHFTRRTLLIAGAAAVIAIVSIAILALSKKNKQSILPPSKAIVHDKGEWIEFKENSPG
CEEEEEEEEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCEEEEECCCCC
LEIIKTSQIGKEGEFVEVEAPARLIASTSPSMSGGEKIILFESADLNDLYVGYIHSKNSL
EEEEEECCCCCCCCEEEEECCCEEEECCCCCCCCCCEEEEEECCCCCCEEEEEEECCCHH
NRSRKNLERIKDMFKHRVATEKDLIEAETNAAELAEFEGKLRAVGLNPNELRGAGAQSAW
HHHHHHHHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHCCCEEEECCCHHHHCCCCCCCEE
IICDVPESQLQSLKKGKKVNLKFSSFPEANWVGVAEALGDNVDPMTRTVKVRILIRNENY
EEEECCHHHHHHHHCCCEEEEEECCCCCCCCEEHHHHHCCCCCCCEEEEEEEEEEECCCE
VLKPGMFATVRFPEDRKGDTVIVPFTSIITVEGKNYVFVEEAPREFYKREVVLGTSGEDR
EECCCEEEEEECCCCCCCCEEEEEEEEEEEECCCCEEEEECCHHHHHCEEEEEECCCCCC
VTIVEGLTKGDKVVVERNHLTQRTQLRFLT
EEEEECCCCCCEEEEECCCCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA