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The map label for this gene is rsmE [H]

Identifier: 116328412

GI number: 116328412

Start: 2039095

End: 2039784

Strand: Reverse

Name: rsmE [H]

Synonym: LBL_1752

Alternate gene names: 116328412

Gene position: 2039784-2039095 (Counterclockwise)

Preceding gene: 116328413

Following gene: 116328410

Centisome position: 56.43

GC content: 38.99

Gene sequence:

>690_bases
TTGGAAGAAGCGATTCTTTTCAGAAGAGAATTTCTCTGCGAACCGCAGTTTTGTTTGAATAAAGAGGAGGTTTCTCATTT
AAAGGCTCTTCGGATTTTTTCCGAGGATAAAAATCTTAGAATATTAAACGGAATCGGATCGGAATGGATCTACGAAGTAA
AGGGAAATTCACGACAAGGAATTCTCAAAAAAACCGAGGTTCACGTAAAACCGGAATCTATTTCCGCGATCGCGACGGCG
ATTCCTAAAGGGAATCGTTTGGAATGGCTTTTACAAAAAGGAACCGAGCTGGGTTTAAGTCGTTTTTATTTTTTAAACTT
TGAACAATCGGATCGAAGGGATTTTAATTTGAGTCGAGCTCAAAAGATCGTGGAAGAGGCGTCGATCCAATCGAAAAGAA
TTTTTCTTCCCGAAGTATTTGTTCCGGTTTCCTTAAATGAATTTTTAAATTTGCAGGAAAACCTAAATCTTTCCATTTAT
CAATTCGATCCGAAGGGAAAATCGGAACCGAAACCGGAATTTTTTCAAAATTCGATTTGGATTGTGGGGCCGGAAGGCGG
ATTTCGTGAAAAGGAAATTCGTTTATTACGAGAAAAGAATATACTCGGGGTTAAAGCGGGAAACGCTATTTTAAAAATCG
AGACCGCGGGAATTTTTGCGGCCTCGTTGTTTCGCTATTTTAACGATTGA

Upstream 100 bases:

>100_bases
CGGATCTATTAGTGTATTGGAATATACGGAAATAGATGAGGAAGTAAAACCGGGTTCTTCCTTATTCGAACTTGCGAACT
TGAATCGATAAGGACTTATT

Downstream 100 bases:

>100_bases
GGTTGCTCAATTGAAGATACAAACCGAGAACGTTGCAGTTTGTTGTACAAGCGCTTGTACAGGAAGTCAGCGCTTGTAAA
TTCGCATTTGTTGCGTTTGT

Product: 16S ribosomal RNA methyltransferase RsmE

Products: NA

Alternate protein names: 16S rRNA m3U1498 methyltransferase [H]

Number of amino acids: Translated: 229; Mature: 229

Protein sequence:

>229_residues
MEEAILFRREFLCEPQFCLNKEEVSHLKALRIFSEDKNLRILNGIGSEWIYEVKGNSRQGILKKTEVHVKPESISAIATA
IPKGNRLEWLLQKGTELGLSRFYFLNFEQSDRRDFNLSRAQKIVEEASIQSKRIFLPEVFVPVSLNEFLNLQENLNLSIY
QFDPKGKSEPKPEFFQNSIWIVGPEGGFREKEIRLLREKNILGVKAGNAILKIETAGIFAASLFRYFND

Sequences:

>Translated_229_residues
MEEAILFRREFLCEPQFCLNKEEVSHLKALRIFSEDKNLRILNGIGSEWIYEVKGNSRQGILKKTEVHVKPESISAIATA
IPKGNRLEWLLQKGTELGLSRFYFLNFEQSDRRDFNLSRAQKIVEEASIQSKRIFLPEVFVPVSLNEFLNLQENLNLSIY
QFDPKGKSEPKPEFFQNSIWIVGPEGGFREKEIRLLREKNILGVKAGNAILKIETAGIFAASLFRYFND
>Mature_229_residues
MEEAILFRREFLCEPQFCLNKEEVSHLKALRIFSEDKNLRILNGIGSEWIYEVKGNSRQGILKKTEVHVKPESISAIATA
IPKGNRLEWLLQKGTELGLSRFYFLNFEQSDRRDFNLSRAQKIVEEASIQSKRIFLPEVFVPVSLNEFLNLQENLNLSIY
QFDPKGKSEPKPEFFQNSIWIVGPEGGFREKEIRLLREKNILGVKAGNAILKIETAGIFAASLFRYFND

Specific function: Specifically methylates the uridine in position 1498 of 16S rRNA in the fully assembled 30S ribosomal subunit [H]

COG id: COG1385

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase RsmE family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006700 [H]

Pfam domain/function: PF04452 Methyltrans_RNA [H]

EC number: =2.1.1.193 [H]

Molecular weight: Translated: 26458; Mature: 26458

Theoretical pI: Translated: 8.67; Mature: 8.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEEAILFRREFLCEPQFCLNKEEVSHLKALRIFSEDKNLRILNGIGSEWIYEVKGNSRQG
CCCHHHHHHHHCCCCHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCEEEEECCCCCCC
ILKKTEVHVKPESISAIATAIPKGNRLEWLLQKGTELGLSRFYFLNFEQSDRRDFNLSRA
CEEEEEEEECCHHHHHHHHHCCCCCCHHHHHHCCCCCCCEEEEEEECCCCCCCCCCHHHH
QKIVEEASIQSKRIFLPEVFVPVSLNEFLNLQENLNLSIYQFDPKGKSEPKPEFFQNSIW
HHHHHHHCCCCCEEECCEEEEEECHHHHHCHHHCCCEEEEEECCCCCCCCCCHHHCCCEE
IVGPEGGFREKEIRLLREKNILGVKAGNAILKIETAGIFAASLFRYFND
EECCCCCCCHHHHHHHHHCCEEEEECCCEEEEEEECHHHHHHHHHHHCC
>Mature Secondary Structure
MEEAILFRREFLCEPQFCLNKEEVSHLKALRIFSEDKNLRILNGIGSEWIYEVKGNSRQG
CCCHHHHHHHHCCCCHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCEEEEECCCCCCC
ILKKTEVHVKPESISAIATAIPKGNRLEWLLQKGTELGLSRFYFLNFEQSDRRDFNLSRA
CEEEEEEEECCHHHHHHHHHCCCCCCHHHHHHCCCCCCCEEEEEEECCCCCCCCCCHHHH
QKIVEEASIQSKRIFLPEVFVPVSLNEFLNLQENLNLSIYQFDPKGKSEPKPEFFQNSIW
HHHHHHHCCCCCEEECCEEEEEECHHHHHCHHHCCCEEEEEECCCCCCCCCCHHHCCCEE
IVGPEGGFREKEIRLLREKNILGVKAGNAILKIETAGIFAASLFRYFND
EECCCCCCCHHHHHHHHHCCEEEEECCCEEEEEEECHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9729120 [H]