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The map label for this gene is sdhB [H]

Identifier: 116328392

GI number: 116328392

Start: 2014840

End: 2015571

Strand: Direct

Name: sdhB [H]

Synonym: LBL_1729

Alternate gene names: 116328392

Gene position: 2014840-2015571 (Clockwise)

Preceding gene: 116328391

Following gene: 116328398

Centisome position: 55.74

GC content: 47.81

Gene sequence:

>732_bases
ATGGATCTGAAGCTCAAAGTTTGGAGACAAAAAAACGGAGAAACAAAGGGAAAGATTGCAGACTATGATGCAAAAGATAT
TTCCCCGAACATGTCCTTTTTAGAGATGCTCGACGTAGTCAACGAAGAACTCATCACCAAAGGAGAAGATCCTATCGCTT
TCGAACACGATTGCCGCGAAGGGATCTGCGGTTCCTGCAACCTGATGATCAACGGCCAGGCTCACGGACCTCATCAAGGA
GTCACTTCTTGCCAGTTACACATGCGTTCCTTCAAGGACGGAGACACAATTTATATCGAACCGTGGAGAGCCAAAGCTTT
CCCGGTCATCAAAGATCTTGTAGTCGATAGAAGTGCGTTTGATAGAATCATCCAGGCCGGAGGTTTTATCAGCGTGAACA
CCGGCGGAGCTCCCGACGCAAACGCAAACCCGATTTCTAAAGTAGACGCGGACGTAGCAATGGACGCAGCGACTTGTATC
GGGTGTGGCGCTTGTGTCGCTTCCTGCAAAAACGCAAGTGCGATGTTGTTCGTTTCCGCAAAGATCACTCATCTCGGCCT
TTTACCACAAGGTAAAGTGGAGCAAAAGGAGCGCGTGAAAAAGATGATCAACGCAATGGACGCGGAAGGTTTCGGAAACT
GCACCAACCAATACGAGTGTGAGGCGGTTTGTCCTAAATCGATCAAGAAAGATTTTATCCGGACGATGAATCGGGATTAT
ATCCTTTCGTAA

Upstream 100 bases:

>100_bases
CAACCGCTTGGGAATTCAACGGAATCGGTAAAAAACCGACAGAACACAGGGAAAAACTGGAATTCGAAAACGTTCACCTC
GCTACAAGGAGTTATAAATA

Downstream 100 bases:

>100_bases
ACGTAACCGAAAAATTCATCACTCTACCAACCTATCAAACCTCTCGCCTTTTTCAGGAAAAGGCGAGAGGTTCCAGTTCG
AAAATTCATCCCTAAAAAAA

Product: succinate dehydrogenase/fumarate reductase iron-sulfur subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 243; Mature: 243

Protein sequence:

>243_residues
MDLKLKVWRQKNGETKGKIADYDAKDISPNMSFLEMLDVVNEELITKGEDPIAFEHDCREGICGSCNLMINGQAHGPHQG
VTSCQLHMRSFKDGDTIYIEPWRAKAFPVIKDLVVDRSAFDRIIQAGGFISVNTGGAPDANANPISKVDADVAMDAATCI
GCGACVASCKNASAMLFVSAKITHLGLLPQGKVEQKERVKKMINAMDAEGFGNCTNQYECEAVCPKSIKKDFIRTMNRDY
ILS

Sequences:

>Translated_243_residues
MDLKLKVWRQKNGETKGKIADYDAKDISPNMSFLEMLDVVNEELITKGEDPIAFEHDCREGICGSCNLMINGQAHGPHQG
VTSCQLHMRSFKDGDTIYIEPWRAKAFPVIKDLVVDRSAFDRIIQAGGFISVNTGGAPDANANPISKVDADVAMDAATCI
GCGACVASCKNASAMLFVSAKITHLGLLPQGKVEQKERVKKMINAMDAEGFGNCTNQYECEAVCPKSIKKDFIRTMNRDY
ILS
>Mature_243_residues
MDLKLKVWRQKNGETKGKIADYDAKDISPNMSFLEMLDVVNEELITKGEDPIAFEHDCREGICGSCNLMINGQAHGPHQG
VTSCQLHMRSFKDGDTIYIEPWRAKAFPVIKDLVVDRSAFDRIIQAGGFISVNTGGAPDANANPISKVDADVAMDAATCI
GCGACVASCKNASAMLFVSAKITHLGLLPQGKVEQKERVKKMINAMDAEGFGNCTNQYECEAVCPKSIKKDFIRTMNRDY
ILS

Specific function: Two Distinct, Membrane-Bound, FAD-Containing Enzymes Are Responsible For The Catalysis Of Fumarate And Succinate Interconversion; The Fumarate Reductase Is Used In Anaerobic Growth, And The Succinate Dehydrogenase Is Used In Aerobic Growth. [C]

COG id: COG0479

COG function: function code C; Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 4Fe-4S ferredoxin-type domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR012675
- InterPro:   IPR001041
- InterPro:   IPR012285
- InterPro:   IPR009051
- InterPro:   IPR004489 [H]

Pfam domain/function: NA

EC number: =1.3.99.1 [H]

Molecular weight: Translated: 26586; Mature: 26586

Theoretical pI: Translated: 6.34; Mature: 6.34

Prosite motif: PS00197 2FE2S_FER_1 ; PS51085 2FE2S_FER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.5 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
8.6 %Cys+Met (Translated Protein)
4.5 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
8.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLKLKVWRQKNGETKGKIADYDAKDISPNMSFLEMLDVVNEELITKGEDPIAFEHDCRE
CCCEEEEEECCCCCCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEECCCHHC
GICGSCNLMINGQAHGPHQGVTSCQLHMRSFKDGDTIYIEPWRAKAFPVIKDLVVDRSAF
CCCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCHHHH
DRIIQAGGFISVNTGGAPDANANPISKVDADVAMDAATCIGCGACVASCKNASAMLFVSA
HHHHHCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEE
KITHLGLLPQGKVEQKERVKKMINAMDAEGFGNCTNQYECEAVCPKSIKKDFIRTMNRDY
EHHEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCHHHHHHHHHHHCCCCC
ILS
CCC
>Mature Secondary Structure
MDLKLKVWRQKNGETKGKIADYDAKDISPNMSFLEMLDVVNEELITKGEDPIAFEHDCRE
CCCEEEEEECCCCCCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEECCCHHC
GICGSCNLMINGQAHGPHQGVTSCQLHMRSFKDGDTIYIEPWRAKAFPVIKDLVVDRSAF
CCCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCHHHH
DRIIQAGGFISVNTGGAPDANANPISKVDADVAMDAATCIGCGACVASCKNASAMLFVSA
HHHHHCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEE
KITHLGLLPQGKVEQKERVKKMINAMDAEGFGNCTNQYECEAVCPKSIKKDFIRTMNRDY
EHHEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCHHHHHHHHHHHCCCCC
ILS
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3027051; 8969504; 9384377; 3114423 [H]