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The map label for this gene is ydhD [H]

Identifier: 116328291

GI number: 116328291

Start: 1904682

End: 1906310

Strand: Direct

Name: ydhD [H]

Synonym: LBL_1626

Alternate gene names: 116328291

Gene position: 1904682-1906310 (Clockwise)

Preceding gene: 116328287

Following gene: 116328292

Centisome position: 52.7

GC content: 39.78

Gene sequence:

>1629_bases
ATGGCACACGAACAAGAAGACAAATACGATATTTCCGTAGATTCGATAAAACCGGTTTCCTTTCCAAAAGATTCAGAACC
CAAACATAAAATCTTACTTTACTCCCTTATTTGGTTTTTATTATCCTTACTTTCCTTTTCCTTGGGAATTCATCTTCTCA
AAAAGGGTGATTCCTCTTTTCCAGGGGAAAACATTCGAGTGAGTTCTGTCGGAGTCATAGACGAAATCCGAAATTTTTTC
TCGATTCATAAAATAACGGATTCTTCCGAAAGGGAAGGGTCGCCTTCAAAATCGGAATCCAATTCGGGCTTTTTCTCATT
GGAAGAAGACGGTGATGTATCCGGGACTGAAGGAACTCTATTGTCAAAAGCGGATGAAAATACTAATTTCCGCGCTTCCA
CTTGGTTTTCGGATTATGAAGCGATGAGGAAGACCGTACATCTTTACAACGAAATCCACCCGTTTATCTACGGAATGAAA
GGCCGTGAAACAAACAACGGAGATCTTTATTCCAGTTGGGGAAGGTCTCAAAAGCACGAACGTGTCGCAGAATTACGTAA
ACTCAATCCGAACATCAAGATCATTCCTACGATCTTTCGCTGGGAGAATAAGTACGAAAAAATTTCCGAAAACATCGGAA
TGAAAGGTCGAAATGATATTCGTGACAAACACCTCGCCAATATCCTTTACGAGTTGGATACATATGGTTACGACGGGATT
GATATCGATTACGAAGGAATGAGTTGCGAGAAAAAAGAAAAATTTGAAGAGTTTATCGTCATTCTTTCCAAAGAAATCCA
TAACCGTGGAAAAATTCTCTCTGTTGCGGTTCATCCAAAAACCCCTGCCAAAAAAGAATCCATGAAAGTCTGCAAAGGTC
TGAAAAATAAAATTAAAATGGATTACGCGGAAAATTGGAGAGGACCTATGACTCACGATTACGCCTTTCTTGCTAAACAT
GCAGATCGTATTAAGATTATGGCATACGAACTCCATCCTAGAAAATATAGAAACCCGGGGCCCGGTCCACAAGCACCAAA
CACCTGGATTAAAAGTATTATCGAATATGCGAAAGCAAGAGTTCCATCTCGTCAGTTGTATATGGCCATTCCTACTTATG
GATACGATTGGGCTTTAAATTGCAACTCGAAGATCAAATCGGTTTACTATCAGGATGCTGTTCGCAAAAAAGAATTAGGA
ATCCACAGACAACCGACTAACATCGATGAGATTCTTGCAAACACTAAAAATTCCGGTTCCTGGACGAATCTCTCCAAATT
TTCCTGGATTCACACCGGAAAAACTTATGAGGATCCAAGTATCTGGTATAAATCGGAAGGTTGTGATCGTGTTGCGTTTT
ACATGAATCGTAAAGCGTTCGAAGATAAGATGAATCTTTTAAGACAATACGATTTGGGTGGATTCTCTTTTTGGCAATTG
ATCAGCGATAATGATCCAGGAATCAACGATTACTTAGAATTATTGGTTTCCAACAAACTTCCTTCTGTGGAAAAAGTAAA
AGATCCAGTGCAAAATCCGACTGCACCCGCTACAGAACAAACCGTTCCGGAAGAAGCAAAAATGGATCGTCAACATCATT
CGGAGAAACTTGCCAGAAAACAAGGTTGA

Upstream 100 bases:

>100_bases
TTAACCCAATAAATTTCTGGAAATGAATTTCAAATTACTTCAACTTAGGAAACTTCTTTATTTTCTCAGATTTTGATTCG
ATAATGAAATTATAACACCA

Downstream 100 bases:

>100_bases
TACTCTTATTACGGACTCTCCTTTGGAAGCGGCGAAAATCCTGCTTGAAGGAGGGAACGTCGTTTTTCCTACGGAAACGG
TTTATGGAATCGGAGCATCC

Product: hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 542; Mature: 541

Protein sequence:

>542_residues
MAHEQEDKYDISVDSIKPVSFPKDSEPKHKILLYSLIWFLLSLLSFSLGIHLLKKGDSSFPGENIRVSSVGVIDEIRNFF
SIHKITDSSEREGSPSKSESNSGFFSLEEDGDVSGTEGTLLSKADENTNFRASTWFSDYEAMRKTVHLYNEIHPFIYGMK
GRETNNGDLYSSWGRSQKHERVAELRKLNPNIKIIPTIFRWENKYEKISENIGMKGRNDIRDKHLANILYELDTYGYDGI
DIDYEGMSCEKKEKFEEFIVILSKEIHNRGKILSVAVHPKTPAKKESMKVCKGLKNKIKMDYAENWRGPMTHDYAFLAKH
ADRIKIMAYELHPRKYRNPGPGPQAPNTWIKSIIEYAKARVPSRQLYMAIPTYGYDWALNCNSKIKSVYYQDAVRKKELG
IHRQPTNIDEILANTKNSGSWTNLSKFSWIHTGKTYEDPSIWYKSEGCDRVAFYMNRKAFEDKMNLLRQYDLGGFSFWQL
ISDNDPGINDYLELLVSNKLPSVEKVKDPVQNPTAPATEQTVPEEAKMDRQHHSEKLARKQG

Sequences:

>Translated_542_residues
MAHEQEDKYDISVDSIKPVSFPKDSEPKHKILLYSLIWFLLSLLSFSLGIHLLKKGDSSFPGENIRVSSVGVIDEIRNFF
SIHKITDSSEREGSPSKSESNSGFFSLEEDGDVSGTEGTLLSKADENTNFRASTWFSDYEAMRKTVHLYNEIHPFIYGMK
GRETNNGDLYSSWGRSQKHERVAELRKLNPNIKIIPTIFRWENKYEKISENIGMKGRNDIRDKHLANILYELDTYGYDGI
DIDYEGMSCEKKEKFEEFIVILSKEIHNRGKILSVAVHPKTPAKKESMKVCKGLKNKIKMDYAENWRGPMTHDYAFLAKH
ADRIKIMAYELHPRKYRNPGPGPQAPNTWIKSIIEYAKARVPSRQLYMAIPTYGYDWALNCNSKIKSVYYQDAVRKKELG
IHRQPTNIDEILANTKNSGSWTNLSKFSWIHTGKTYEDPSIWYKSEGCDRVAFYMNRKAFEDKMNLLRQYDLGGFSFWQL
ISDNDPGINDYLELLVSNKLPSVEKVKDPVQNPTAPATEQTVPEEAKMDRQHHSEKLARKQG
>Mature_541_residues
AHEQEDKYDISVDSIKPVSFPKDSEPKHKILLYSLIWFLLSLLSFSLGIHLLKKGDSSFPGENIRVSSVGVIDEIRNFFS
IHKITDSSEREGSPSKSESNSGFFSLEEDGDVSGTEGTLLSKADENTNFRASTWFSDYEAMRKTVHLYNEIHPFIYGMKG
RETNNGDLYSSWGRSQKHERVAELRKLNPNIKIIPTIFRWENKYEKISENIGMKGRNDIRDKHLANILYELDTYGYDGID
IDYEGMSCEKKEKFEEFIVILSKEIHNRGKILSVAVHPKTPAKKESMKVCKGLKNKIKMDYAENWRGPMTHDYAFLAKHA
DRIKIMAYELHPRKYRNPGPGPQAPNTWIKSIIEYAKARVPSRQLYMAIPTYGYDWALNCNSKIKSVYYQDAVRKKELGI
HRQPTNIDEILANTKNSGSWTNLSKFSWIHTGKTYEDPSIWYKSEGCDRVAFYMNRKAFEDKMNLLRQYDLGGFSFWQLI
SDNDPGINDYLELLVSNKLPSVEKVKDPVQNPTAPATEQTVPEEAKMDRQHHSEKLARKQG

Specific function: Unknown

COG id: COG3858

COG function: function code R; Predicted glycosyl hydrolase

Gene ontology:

Cell location: Spore wall (Probable). Note=Probably localized either on the surface of the outer spore membrane and/or in the inner spore coat [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 2 LysM repeats [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011583
- InterPro:   IPR001223
- InterPro:   IPR017853
- InterPro:   IPR013781
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF00704 Glyco_hydro_18; PF01476 LysM [H]

EC number: NA

Molecular weight: Translated: 62488; Mature: 62357

Theoretical pI: Translated: 8.65; Mature: 8.65

Prosite motif: PS01095 CHITINASE_18

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAHEQEDKYDISVDSIKPVSFPKDSEPKHKILLYSLIWFLLSLLSFSLGIHLLKKGDSSF
CCCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCC
PGENIRVSSVGVIDEIRNFFSIHKITDSSEREGSPSKSESNSGFFSLEEDGDVSGTEGTL
CCCCEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCE
LSKADENTNFRASTWFSDYEAMRKTVHLYNEIHPFIYGMKGRETNNGDLYSSWGRSQKHE
EECCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCHHHH
RVAELRKLNPNIKIIPTIFRWENKYEKISENIGMKGRNDIRDKHLANILYELDTYGYDGI
HHHHHHHCCCCCEEEEHHHHHCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCC
DIDYEGMSCEKKEKFEEFIVILSKEIHNRGKILSVAVHPKTPAKKESMKVCKGLKNKIKM
EEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCC
DYAENWRGPMTHDYAFLAKHADRIKIMAYELHPRKYRNPGPGPQAPNTWIKSIIEYAKAR
CHHHCCCCCCCCCHHHHHHCCCCEEEEEEEECCHHCCCCCCCCCCCHHHHHHHHHHHHHC
VPSRQLYMAIPTYGYDWALNCNSKIKSVYYQDAVRKKELGIHRQPTNIDEILANTKNSGS
CCCCEEEEEECCCCCCEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCC
WTNLSKFSWIHTGKTYEDPSIWYKSEGCDRVAFYMNRKAFEDKMNLLRQYDLGGFSFWQL
CCCCCCEEEEECCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHE
ISDNDPGINDYLELLVSNKLPSVEKVKDPVQNPTAPATEQTVPEEAKMDRQHHSEKLARK
ECCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
QG
CC
>Mature Secondary Structure 
AHEQEDKYDISVDSIKPVSFPKDSEPKHKILLYSLIWFLLSLLSFSLGIHLLKKGDSSF
CCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCC
PGENIRVSSVGVIDEIRNFFSIHKITDSSEREGSPSKSESNSGFFSLEEDGDVSGTEGTL
CCCCEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCE
LSKADENTNFRASTWFSDYEAMRKTVHLYNEIHPFIYGMKGRETNNGDLYSSWGRSQKHE
EECCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCHHHH
RVAELRKLNPNIKIIPTIFRWENKYEKISENIGMKGRNDIRDKHLANILYELDTYGYDGI
HHHHHHHCCCCCEEEEHHHHHCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCC
DIDYEGMSCEKKEKFEEFIVILSKEIHNRGKILSVAVHPKTPAKKESMKVCKGLKNKIKM
EEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCC
DYAENWRGPMTHDYAFLAKHADRIKIMAYELHPRKYRNPGPGPQAPNTWIKSIIEYAKAR
CHHHCCCCCCCCCHHHHHHCCCCEEEEEEEECCHHCCCCCCCCCCCHHHHHHHHHHHHHC
VPSRQLYMAIPTYGYDWALNCNSKIKSVYYQDAVRKKELGIHRQPTNIDEILANTKNSGS
CCCCEEEEEECCCCCCEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCC
WTNLSKFSWIHTGKTYEDPSIWYKSEGCDRVAFYMNRKAFEDKMNLLRQYDLGGFSFWQL
CCCCCCEEEEECCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHE
ISDNDPGINDYLELLVSNKLPSVEKVKDPVQNPTAPATEQTVPEEAKMDRQHHSEKLARK
ECCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
QG
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377; 12177332 [H]