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The map label for this gene is clpS [H]

Identifier: 116328081

GI number: 116328081

Start: 1611086

End: 1611412

Strand: Direct

Name: clpS [H]

Synonym: LBL_1378

Alternate gene names: 116328081

Gene position: 1611086-1611412 (Clockwise)

Preceding gene: 116328080

Following gene: 116328082

Centisome position: 44.57

GC content: 41.28

Gene sequence:

>327_bases
GTGAGTGATATCTTTCGATTTGATACCGAAGAACAAACTCTCACTAAAGAGAAGGTAAAACTCAAACGTCCTTCCAAATA
CAGAGTTATCATACTCAACGACGATTTTACTCCGATGGAGTTCGTCGTTTGGATTTTACAATTTGTCTTTCACAGAAGTA
GAGCGCAAAGTCAGCAGATCATGTTGAAGGCTCATATAACTGGAAAAGCACTGTGCGGCGTTTACTCGCACGATGTCGCA
AGGACTAAAGTTATACAAGTTCAACAATTGGCGGAACAACATGGATATCCGCTTCACTGTACGATGGAAGTGGAGGAAGA
ATCATGA

Upstream 100 bases:

>100_bases
AAATGATCCAAGAAACCAATGAACATTCTCCGTTGAAAAAAACGCAAACGAATGTCTACTTCAAAACGGAAACAACTTCG
AACTTAGGGAGTTACGAACC

Downstream 100 bases:

>100_bases
TACTCACGGAAGAAATGGAACGTACCCTCAAAAAGGCTTGGGAAGAAGCCAAAAGAAGAAGAAACGAATTTATCACTCTA
GAGCACATCCTTTTCGCTCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 108; Mature: 107

Protein sequence:

>108_residues
MSDIFRFDTEEQTLTKEKVKLKRPSKYRVIILNDDFTPMEFVVWILQFVFHRSRAQSQQIMLKAHITGKALCGVYSHDVA
RTKVIQVQQLAEQHGYPLHCTMEVEEES

Sequences:

>Translated_108_residues
MSDIFRFDTEEQTLTKEKVKLKRPSKYRVIILNDDFTPMEFVVWILQFVFHRSRAQSQQIMLKAHITGKALCGVYSHDVA
RTKVIQVQQLAEQHGYPLHCTMEVEEES
>Mature_107_residues
SDIFRFDTEEQTLTKEKVKLKRPSKYRVIILNDDFTPMEFVVWILQFVFHRSRAQSQQIMLKAHITGKALCGVYSHDVAR
TKVIQVQQLAEQHGYPLHCTMEVEEES

Specific function: Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation [H]

COG id: COG2127

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ClpS family [H]

Homologues:

Organism=Escherichia coli, GI1787108, Length=104, Percent_Identity=46.1538461538462, Blast_Score=95, Evalue=1e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022935
- InterPro:   IPR003769
- InterPro:   IPR014719 [H]

Pfam domain/function: PF02617 ClpS [H]

EC number: NA

Molecular weight: Translated: 12698; Mature: 12567

Theoretical pI: Translated: 7.63; Mature: 7.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDIFRFDTEEQTLTKEKVKLKRPSKYRVIILNDDFTPMEFVVWILQFVFHRSRAQSQQI
CCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCEE
MLKAHITGKALCGVYSHDVARTKVIQVQQLAEQHGYPLHCTMEVEEES
EEEEECCCHHHHHHHHCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCC
>Mature Secondary Structure 
SDIFRFDTEEQTLTKEKVKLKRPSKYRVIILNDDFTPMEFVVWILQFVFHRSRAQSQQI
CCCCCCCCCHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCEE
MLKAHITGKALCGVYSHDVARTKVIQVQQLAEQHGYPLHCTMEVEEES
EEEEECCCHHHHHHHHCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA